| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF008N07 | Sequence | 536 | 008748 (11) | ref|XP_009610166.1| | 2e-50 | PREDICTED: DEAD-box ATP-dependent RNA helicase 24 isoform X2 [Nicotiana tomento | 688 | 005678 (9) | gb|KHN43447.1| | 7e-50 | DEAD-box ATP-dependent RNA helicase 24 [Glycine soja] |
| JMFF010N09 | Sequence | 649 | 008748 (11) | ref|XP_009610165.1| | 2e-65 | PREDICTED: DEAD-box ATP-dependent RNA helicase 24 isoform X1 [Nicotiana tomento | 772 | 005678 (9) | gb|KHN43447.1| | 2e-55 | DEAD-box ATP-dependent RNA helicase 24 [Glycine soja] |
| JMFF014M03 | Sequence | 578 | 008748 (11) | ref|XP_009610165.1| | 2e-62 | PREDICTED: DEAD-box ATP-dependent RNA helicase 24 isoform X1 [Nicotiana tomento | 820 | 005678 (9) | gb|KHN43447.1| | 3e-70 | DEAD-box ATP-dependent RNA helicase 24 [Glycine soja] |
| JMFF034C07 | Sequence | 331 | 008748 (11) | ref|XP_006388444.1| | 1e-32 | hypothetical protein POPTR_0184s002102g, partial [Populus trichocarpa] gb|ERP473 | 758 | 005678 (9) | gb|KHN43447.1| | 1e-67 | DEAD-box ATP-dependent RNA helicase 24 [Glycine soja] |
| JMFF041A20 | Sequence | 633 | 008748 (11) | ref|XP_009610166.1| | 1e-72 | PREDICTED: DEAD-box ATP-dependent RNA helicase 24 isoform X2 [Nicotiana tomento | 481 | 005678 (9) | gb|KHN19202.1| | 6e-26 | DEAD-box ATP-dependent RNA helicase 24 [Glycine soja] |
| JMFF043C04 | Sequence | 648 | 008748 (11) | ref|XP_009610165.1| | 5e-66 | PREDICTED: DEAD-box ATP-dependent RNA helicase 24 isoform X1 [Nicotiana tomento | 626 | 005678 (9) | ref|XP_009610165.1| | 9e-33 | PREDICTED: DEAD-box ATP-dependent RNA helicase 24 isoform X1 [Nicotiana tomento |
| JMSF009I24 | Sequence | 242 | 008748 (11) | ref|XP_006388444.1| | 7e-27 | hypothetical protein POPTR_0184s002102g, partial [Populus trichocarpa] gb|ERP473 | 743 | 005678 (9) | gb|KHN43447.1| | 7e-62 | DEAD-box ATP-dependent RNA helicase 24 [Glycine soja] |
| JMSF022A04 | Sequence | 650 | 005074 (4) | ref|XP_009602013.1| | 2e-37 | PREDICTED: probable membrane-associated kinase regulator 6 isoform X2 [Nicotian | 771 | 005678 (9) | ref|XP_009610165.1| | 4e-33 | PREDICTED: DEAD-box ATP-dependent RNA helicase 24 isoform X1 [Nicotiana tomento |
| JMSF045O02 | Sequence | 712 | 005074 (4) | ref|XP_009602013.1| | 1e-40 | PREDICTED: probable membrane-associated kinase regulator 6 isoform X2 [Nicotian | 803 | 005678 (9) | ref|XP_009610165.1| | 6e-33 | PREDICTED: DEAD-box ATP-dependent RNA helicase 24 isoform X1 [Nicotiana tomento |
This contig is upended
. : . : . : . : . : . :
rJMFF034C07+ GATATGCATGTTCATAGAATTGGTAGANCAGGCCGT
rJMFF010N09+ CTAAAGACATGGATATGCATGTTCATAGAATTGGTAGAACAGNCCGT
rJMSF009I24+ TGGTAGAACAGGCCGT
rJMFF014M03+ TGCTAAAGACATGGATATGCATGTTCATAGAATTGGTAGAACAGNCCGT
____________________________________________________________
consensus TGCTAAAGACATGGATATGCATGTTCATAGAATTGGTAGAACAGGCCGT
. : . : . : . : . : . :
rJMFF034C07+ GCTGGTGATAAAGATGGAACTGCATACACTCTTATTACTCAAAAAGAGGCACGTTTTGCT
rJMFF010N09+ GCTGGTGATAAAGATGGAACTGCATACACTCTTATTACTCAAAAAGAGGCACGTTTTGCT
rJMSF009I24+ GCTGGTGATAAAGATGGAACTGCATACACTCTTATTACTCAAAAAGAGGCACGTTTTGCT
rJMFF008N07+ ACTCAAAAAGAGGCACGTTTTGCT
rJMFF014M03+ GCTGGTGATAAAGATGGAACTGCATACACTCTTATTACTCAAAAAGAGGCACGTTTTGCT
____________________________________________________________
consensus GCTGGTGATAAAGATGGAACTGCATACACTCTTATTACTCAAAAAGAGGCACGTTTTGCT
. : . : . : . : . : . :
rJMFF034C07+ GGAGAATTAGTCAACAGTTTGATTACTGCTGGTCAAAATGTG-CCTGCGGAACTGATGGA
rJMFF010N09+ GGAGAATTAGTCAACAGTTTGATTACTGCTGGTCAAAATGTGCCCTGCGGAACTGATGGA
rJMSF009I24+ GGAGAATTAGTCAACAGTTTGATTACTGCTGGTCAAAATGTG-CCTGCGGAACTGATGGA
rJMFF008N07+ GGAGAATTAGTCAACAGTTTGATTACTGCTGGTCAAAATGTG-CCTGCGGAACTGATGGA
rJMFF014M03+ GGAGAATTAGTCAACAGTTTGATTACTGCTGGTCAAAATGTG-CCTGCGGAACTGATGGA
____________________________________________________________
consensus GGAGAATTAGTCAACAGTTTGATTACTGCTGGTCAAAATGTG-CCTGCGGAACTGATGGA
. : . : . : . : . : . :
rJMFF034C07+ CCTTGCAATGAAGGATGGAAGATTTCGTTCCAAACGTGATGCACGGAAAGGAGGTGGAAA
rJMFF010N09+ CCTTGCAATGAAGGATGGAAGATTTCGTTCCAAACGTGATGCACGGAAAGGAGGTGGAAA
rJMSF009I24+ CCTTGCAATGAAGGATGGAAGATTTCGTTCCAAACGTGATGCACGGAAAGGAGGTGGAAA
rJMFF008N07+ CCTTGCAATGAAGGATGGAAGATTTCGTTCCAAACGTGATGCACGGAAAGGAGGTGGAAA
rJMFF014M03+ CCTTGCAATGAAGGATGGAAGATTTCGTTCCAAACGTGATGCACGGAAAGGAGGTGGAAA
rJMFF043C04+ TCCAAACGTGATGCACGGAAAGGAGGTGGAAA
rJMSF045O02+ GGTGGAAA
____________________________________________________________
consensus CCTTGCAATGAAGGATGGAAGATTTCGTTCCAAACGTGATGCACGGAAAGGAGGTGGAAA
. : . : . : . : . : . :
rJMFF034C07+ GAGGGCGAAA-GGAAGGGGAGGCAGTGGTCGAGGTGTGCGTGGCGTGGATTATGGTCTGG
rJMFF010N09+ GAGGGCGAAA-GGAAGGGGAGGCAGTGGTCGAGGTGTGCGTGGCGTGGATTATGGTCTGG
rJMSF009I24+ GAGGGCGAAA-GGAAGGGGAGGCAGTGGTCGAGGTGTGCGTGGCGTGGATTATGGTCTGG
rJMFF008N07+ GAGGGCGAAA-GGAAGGGGAGGCAGTGGTCGAGGTGTGCGTGGCGTGGATTATGGTCTGG
rJMFF014M03+ GAGGGCGAAA-GGAAGGGGAGGCAGTGGTCGAGGTGTGCGTGGCGTGGATTATGGTCTGG
rJMFF043C04+ GAGGGCGAAA-GGAAGGGGAGGCAGTGGTCGAGGTGTGCGTGGCGTGGATTATGGTCTGG
rJMSF045O02+ GAGGGCGAAAGGAAAGGGGAGGCAGTGGTCGAGGTGTGCGTGGCGTGGATTATGGTCTGG
rJMSF022A04+ AAGGAAGGGGAGNCAGTGGTCGAGGTGTGCGTGGCGTGGATTATGGTCTGG
____________________________________________________________
consensus GAGGGCGAAA-GGAAGGGGAGGCAGTGGTCGAGGTGTGCGTGGCGTGGATTATGGTCTGG
. : . : . : . : . : . :
rJMFF034C07+ GTATTGGATACAGTGCAGAATCAAGTAATGCTCCAACTACCACTGTTCCAAGCCGTTCTG
rJMFF010N09+ GTATTGGATACAGTGCAGAATCAAGTAATGCTCCAACTACCACTGTTCCAAGCCGTTCTG
rJMSF009I24+ GTATTGGATACAGTGCAGAATCAAGTAATGCTCCAACTACCACTGTTCCAAGCCGTTCTG
rJMFF008N07+ GTATTGGATACAGTGCAGAATCAAGTAATGCTCCAACTACCACTGTTCCAAGCCGTTCTG
rJMFF014M03+ GTATTGGATACAGTGCAGAATCAAGTAATGCTCCAACTACCACTGTTCCAAGCCGTTCTG
rJMFF041A20+ ATCAAGTAATGCTCCAACTACCCCTGTTTCAAGCCGTTTTG
rJMFF043C04+ GTATTGGATACAGTGCAGAATCAAGTAATGCTCCAACTACCACTGTTCCAAGCCGTTCTG
rJMSF045O02+ GTATTGGATACAGTGCAGAATCAAGTAATGCTCCAACTACCACTGTTCCAAGCCGTTCTG
rJMSF022A04+ GTATTGGATACAGTGCAGAATCAAGTAATGCTCCAACTACCACTGTTCCAAGCCGTTCTG
____________________________________________________________
consensus GTATTGGATACAGTGCAGAATCAAGTAATGCTCCAACTACCACTGTTCCAAGCCGTTCTG
. : . : . : . : . : . :
rJMFF034C07+ CAGCAGTAAATTCACTAAGAACCGGGATGATGGCACAGTTTAAGAGCAACTTTGTTGCTG
rJMFF010N09+ CAGCAGTAAATTCACTAAGAACCGGGATGATGGCACAGTTTAAGAGCAACTTTGTTGCTG
rJMSF009I24+ CAGCAGTAAATTCACTAAGAACCGGGATGATGGCACAGTTTAAGAGCAACTTTGTTGCTG
rJMFF008N07+ CAGCAGTAAATTCACTAAGAACCGGGATGATGGCACAGTTTAAGAGCAACTTTGTTGCTG
rJMFF014M03+ CAGCAGTAAATTCACTAAGAACCGGGATGATGGCACAGTTTAAGAGCAACTTTGTTGCTG
rJMFF041A20+ CAGCAGTAAATTCACTAAAAACCGGGATGATGGCCCAGTTTAAAAGCAACTTTGTTGCTG
rJMFF043C04+ CAGCAGTAAATTCACTAAGAACCGGGATGATGGCACAGTTTAAGAGCAACTTTGTTGCTG
rJMSF045O02+ CAGCAGTAAATTCACTAAGAACCGGGATGATGGCACAGTTTAAGAGCAACTTTGTTGCTG
rJMSF022A04+ CAGCAGTAAATTCACTAAGAACCGGGATGATGGCACAGTTTAAGAGCAACTTTGTTGCTG
____________________________________________________________
consensus CAGCAGTAAATTCACTAAGAACCGGGATGATGGCACAGTTTAAGAGCAACTTTGTTGCTG
. : . : . : . : . : . :
rJMFF034C07+ CCTCATCAAATCTCCAAAATCAGGCGTTAGGTAATAGTTCAGGAATGAACCCTAACAAGA
rJMFF010N09+ CCTCATCAAATCTCCAAAATCAGGCGTTAGGTAATAGTTCAGGAATGAACCCTAACAAGA
rJMSF009I24+ CCTCATCAAATCTCCAAAATCAGGCGTTAGGTAATAGTTCAGGAATGAACCCTAACAAGA
rJMFF008N07+ CCTCATCAAATCTCCAAAATCAGGCGTTAGGTAATAGTTCAGGAATGAACCCTAACAAGA
rJMFF014M03+ CCTCATCAAATCTCCAAAATCAGGCGTTAGGTAATAGTTCAGGAATGAACCCTAACAAGA
rJMFF041A20+ CCTCATCAAATTTCCAAAATCAGGCGTTAGGTAATAGTTCAGGAATGAACCCTAACAAAA
rJMFF043C04+ CCTCATCAAATCTCCAAAATCAGGCGTTAGGTAATAGTTCAGGAATGAACCCTAACAAGA
rJMSF045O02+ CCTCATCAAATCTCCAAAATCAGGCGTTAGGTAATAGTTCAGGAATGAACCCTAACAAGA
rJMSF022A04+ CCTCATCAAATCTCCAAAATCAGGCGTTAGGTAATAGTTCAGGAATGAACCCTAACAAGA
____________________________________________________________
consensus CCTCATCAAATCTCCAAAATCAGGCGTTAGGTAATAGTTCAGGAATGAACCCTAACAAGA
. : . : . : . : . : . :
rJMFF034C07+ AAATGGCACTGCCAGGCTTTGTATCTGGGGGAACAATAGGTGGAGACACAAACGCTTCCC
rJMFF010N09+ AAATGGCACTGCCAGGCTTTGTATCTGGGGGAACAATAGGTGGAGACACAAACGCTTCCC
rJMSF009I24+ AAATGGCACTGCCAGGCTTTGTATCTGGGGGAACAATAGGTGGAGACACAAACGCTTCCC
rJMFF008N07+ AAATGGCACTGCCAGGCTTTGTATCTGGGGGAACAATAGGTGGAGACACAAACGCTTCCC
rJMFF014M03+ AAATGGCACTGCCAGGCTTTGTATCTGGGGGAACAATAGGTGGAGACACAAACGCTTCCC
rJMFF041A20+ AAATGGCCCTGCCAGGCTTTGTATTTGGGGGAACAATAGGTGGAGACACAAACGCTTCCC
rJMFF043C04+ AAATGGCACTGCCAGGCTTTGTATCTGGGGGAACAATAGGTGGAGACACAAACGCTTCCC
rJMSF045O02+ AAATGGCACTGCCAGGCTTTGTATCTGGGGGAACAATAGGTGGAGACACAAACGCTTCCC
rJMSF022A04+ AAATGGCACTGCCAGGCTTTGTATCTGGGGGAACAATAGGTGGAGACACAAACGCTTCCC
____________________________________________________________
consensus AAATGGCACTGCCAGGCTTTGTATCTGGGGGAACAATAGGTGGAGACACAAACGCTTCCC
. : . : . : . : . : . :
rJMFF034C07+ GGACTAGTTCAATTAGTAATGCTGCAACATCTGTTCAGAAACCGAGAGAAGATGCTAGCC
rJMFF010N09+ GGACTAGTTCAATTAGTAATGCTGCAACATCTGTTCAGAAACCGAGAGAAGATGCTAGCC
rJMSF009I24+ GGACTAGTTCAATTAGTAATGCTGCAACATCTGTTCAGAAACCGAGAGAAGATGCTAGCC
rJMFF008N07+ GGACTAGTTCAATTAGTAATGCTGCAACATCTGTTCAGAAACCGAGAGAAGATGCTAGCC
rJMFF014M03+ GGACTAGTTCAATTAGTAATGCTGCAACATCTGTTCAGAAACCGAGAGAAGATGCTAGCC
rJMFF041A20+ GGACTAGTTCAATTAGTAATGCTGCAACATCTGTTCAAAAACCGAAAAAAAATGCTAGCC
rJMFF043C04+ GGACTAGTTCAATTAGTAATGCTGCAACATCTGTTCAGAAACCGAGAGAAGATGCTAGCC
rJMSF045O02+ GGACTAGTTCAATTAGTAATGCTGCAACATCTGTTCAGAAACCGAGAGAAGATGCTAGCC
rJMSF022A04+ GGACTAGTTCAATTAGTAATGCTGCAACATCTGTTCAGAAACCGAGAGAAGATGCTAGCC
____________________________________________________________
consensus GGACTAGTTCAATTAGTAATGCTGCAACATCTGTTCAGAAACCGAGAGAAGATGCTAGCC
. : . : . : . : . : . :
rJMFF034C07+ ACTTGAGCTCAGGAAGCTCTAGAGATAGGCAGAGAGAAAGGAGGCGGCCTTCTGGTTGGG
rJMFF010N09+ ACTTGAGCTCAGGAAGCTCTAGAGATAGGCAGAGAGAAAGGAGGCGGCCTTCTGGTTGGG
rJMSF009I24+ ACTTGAGCTCAGGAAGCTCTAGAGATAGGCAGAGAGAAAGGAGGCGGCCTTCTGGTTGGG
rJMFF008N07+ ACTTGAGCTCAGGAAGCTCTAGAGATAGGCAGAGAGAAAGGAGGCGGCCTTCTGGTTGGG
rJMFF014M03+ ACTTGAGCTCAGGAAGCTCTAGAGATAGGCAGAGAGAAAGGAGGCGGCCTTCTGGTTGGG
rJMFF041A20+ CCTTGAGCTCAGGAAGCTTTAAAGATAGGCAAAAAAAAAGGAGGCGGCCTTTTGGTTGGG
rJMFF043C04+ ACTTGAGCTCAGGAAGCTCTAGAGATAGGCAGAGAGAAAGGAGGCGGCCTTCTGGTTGGG
rJMSF045O02+ ACTTGAGCTCAGGAAGCTCTAGAGATAGGCAGAGAGAAAGGAGGCGGCCTTCTGGTTGGG
rJMSF022A04+ ACTTGAGCTCAGGAAGCTCTAGAGATAGGCAGAGAGAAAGGAGGCGGCCTTCTGGTTGGG
____________________________________________________________
consensus ACTTGAGCTCAGGAAGCTCTAGAGATAGGCAGAGAGAAAGGAGGCGGCCTTCTGGTTGGG
. : . : . : . : . : . :
rJMFF034C07+ ACCGTTGATTTGTTTCTTTGGCAGCTCATTTATATTTATACTGGATGACCAAATCCGCTT
rJMFF010N09+ ACCGTTGATTTGTTTCTTTGGCAGCTCATTTATATTTATACTGGATGACCAAATCCGCTT
rJMSF009I24+ ACCGTTGATTTGTTTCTTTGGCAGCTCATTTATATTTATACTGGATGACCAAATCCGCTT
rJMFF008N07+ ACCGTTGATTTGTTTCTTTGGCAGCTCATTTATATTTATACTGGATGACCAAATCCGCTT
rJMFF014M03+ ACCGTTGATTTGTTTCTTTGGCAGCTCATTTATATTTATACTGGATGACCAAATCCGCTT
rJMFF041A20+ ACCGTTGATTTGTTTTTTTGGCAGCTCATTTATATTTATACTGGATGACCAAATCCGCTT
rJMFF043C04+ ACCGTTGATTTGTTTCTTTGGCAGCTCATTTATATTTATACTGGATGACCAAATCCGCTT
rJMSF045O02+ ACCGTTGATTTGTTTCTTTGGCAGCTCATTTATATTTATACTGGATGACCAAATCCGCTT
rJMSF022A04+ ACCGTTGATTTGTTTCTTTGGCAGCTCATTTATATTTATACTGGATGACCAAATCCGCTT
____________________________________________________________
consensus ACCGTTGATTTGTTTCTTTGGCAGCTCATTTATATTTATACTGGATGACCAAATCCGCTT
. : . : . : . : . : . :
rJMFF034C07+ GTGTGAACATGAATAGTCATAATTTAGGTGAAAGTTTTATCTCATTGTCTGTAATGATGC
rJMFF010N09+ GTGTGAACATGAATAGTCATAATTTAGGTGAAAGTTTTATCTCATTGTCTGTAATGATGC
rJMSF009I24+ GTGTGAACTTGAATAGTCATAATTTAGGTGAAAGTTTTATCTCATTGTCTGTAATGATGC
rJMFF008N07+ GTGTGAACTTGAATAGTCATAATTTAGGTGAAAGTTTTATCTCATTGTCTGTAATGATGC
rJMFF014M03+ GTGTGAACTTGAATAGTCATAATTTAGGTGAAAGTTTTATCTCATTGTCTGTAATGATGC
rJMFF041A20+ GTGTGAACTTGAATAGTCATAATTTAGGTGAAAGTTTTATCTCATTGTCTGTAATGAAGC
rJMFF043C04+ GTGTGAACTTGAATAGTCATAATTTAGGTGAAAGTTTTATCTCATTGTCTGTAATGATGC
rJMSF045O02+ GTGTGAACTTGAATAGTCATAATTTAGGTGAAAGTTTTATCTCATTGTCTGTAATGATGC
rJMSF022A04+ GTGTGAACTTGAATAGTCATAATTTAGGTGAAAGTTTTATCTCATTGTCTGTAATGATGC
____________________________________________________________
consensus GTGTGAACTTGAATAGTCATAATTTAGGTGAAAGTTTTATCTCATTGTCTGTAATGATGC
. : . : . : . : . : . :
rJMFF034C07+ TCTT
rJMFF010N09+ TCTTTG
rJMSF009I24+ TCTT
rJMFF008N07+ TCTTTG
rJMFF014M03+ TCTTTGCCCAAATTGCTCATCTTGGTTTA
rJMFF041A20+ TCTTTGCCCAAATTGCTCAT
rJMFF043C04+ TCTTTGCCCAAATTGCTCATCTTGGTTTA
rJMSF045O02+ TCTTTGCCCAAATTGCTCATCTTGGTTTATGTGCCCTTGTTCCAATTCTAGTTTGTGGTC
rJMSF022A04+ TCTTTGCCCAAATTGCTCATCTTGGTTTATGTGCCCTTGTTCCAATTCTAGTTTGTGGTC
____________________________________________________________
consensus TCTTTGCCCAAATTGCTCATCTTGGTTTATGTGCCCTTGTTCCAATTCTAGTTTGTGGTC
. : . : . : . : . : . :
rJMSF045O02+ TTAATTTTTATTGTATAGATAAATAGATAGATGATATTTATGTGCCCTTGTTCCCACTCC
rJMSF022A04+ TTAATTTTTATTGTATAGATAAATAGATAGATGATATTTATGTGCCCTTGTTCCCACTCC
____________________________________________________________
consensus TTAATTTTTATTGTATAGATAAATAGATAGATGATATTTATGTGCCCTTGTTCCCACTCC
. : . : . : . : . : . :
rJMSF045O02+ ATTTAGCCCAGCCTTGCCCCATCCTCTTTTTAAATTACCTCTTATTATATCTGTTGACAT
rJMSF022A04+ ATTTAGCCCAGCCTTGCCCCATCCTCTTTTTAAATTACCTCTTATTATATCTGTTGACAT
____________________________________________________________
consensus ATTTAGCCCAGCCTTGCCCCATCCTCTTTTTAAATTACCTCTTATTATATCTGTTGACAT
. : . : . : . : . : . :
rJMSF045O02+ GTCACTCTTGAAGGTGAATGTTTAAGCTAAAATTAAGTAGGAAAATGCCCT
rJMSF022A04+ GTCACTCTTGAAGGTGAATGTTTAAGCTAAAATTAAGTAGGAAAATGCCCTGTACCATTT
____________________________________________________________
consensus GTCACTCTTGAAGGTGAATGTTTAAGCTAAAATTAAGTAGGAAAATGCCCTGTACCATTT