| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF016O20 | Sequence | 242 | 009415 (3) | 800 | 005656 (3) | ref|XP_009603394.1| | 220 | PREDICTED: uncharacterized protein LOC104098381 [Nicotiana tomentosiformis] | |||
| JMSF028O07 | Sequence | 677 | 009415 (3) | ref|XP_009772209.1| | 2e-74 | PREDICTED: uncharacterized protein LOC104222660 isoform X2 [Nicotiana sylvestri | 728 | 005656 (3) | ref|XP_009603394.1| | 205 | PREDICTED: uncharacterized protein LOC104098381 [Nicotiana tomentosiformis] |
| JMSF031E20 | Sequence | 677 | 009415 (3) | ref|XP_009772209.1| | 2e-74 | PREDICTED: uncharacterized protein LOC104222660 isoform X2 [Nicotiana sylvestri | 736 | 005656 (3) | ref|XP_009603394.1| | 209 | PREDICTED: uncharacterized protein LOC104098381 [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
rJMSF016O20+ ACTAGATGNCCTGATGNCAAT
____________________________________________________________
consensus ACTAGATGNCCTGATGNCAAT
. : . : . : . : . : . :
rJMSF031E20+ CATGCTCTTGTTT
rJMSF028O07+ CTCTTGTTT
rJMSF016O20+ AATTTCTATGAAGCTGTCATTACTGATACAACCCAACTGAGGGACGACATGCTCTTGTTT
____________________________________________________________
consensus AATTTCTATGAAGCTGTCATTACTGATACAACCCAACTGAGGGACGACATGCTCTTGTTT
. : . : . : . : . : . :
rJMSF031E20+ ATGACATGGNCACCACAAATGAGACATGGGAATGGGTCAACCTATCAGAGATTTCTCCAG
rJMSF028O07+ ATGACATGGGCACCACAAATGAGACATGGGAATGGGTCAACCTATCAGAGATTTCTCCAG
rJMSF016O20+ ATGACATGGGCACCACAANTGAGACATGGGAATGGGTCAACCTATCAGAGATTTCTCCAG
____________________________________________________________
consensus ATGACATGGGCACCACAAATGAGACATGGGAATGGGTCAACCTATCAGAGATTTCTCCAG
. : . : . : . : . : . :
rJMSF031E20+ AGGATATACAATGGGACGAGGGACCTGGCCATGTAGTTAATAGGGCTATTGGTCGGGATA
rJMSF028O07+ AGGATATACAATGGGACGAGGGACCTGGCCATGTAGTTAATAGGGCTATTGGTCGGGATA
rJMSF016O20+ AGGATATACAATGGGACGAGGGACCTGGCCATGTAGTTAATAGGGCTATTGGTCGGGATA
____________________________________________________________
consensus AGGATATACAATGGGACGAGGGACCTGGCCATGTAGTTAATAGGGCTATTGGTCGGGATA
. : . : . : . : . : . :
rJMSF031E20+ GTGCTCCAAGTCTAGGGAGAGGTCGGGGGTTGACTAAATCTCAATCTAGAAAGGACTTTC
rJMSF028O07+ GTGCTCCAAGTCTAGGGAGAGGTCGGGGGTTGACTAAATCTCAATCTAGAAAGGACTTTC
rJMSF016O20+ GTGCTCCAAGTCTAGGGAGAGGTCGGGGGTTGACTAAATCTCAATCTAGAAAGGACTTTC
____________________________________________________________
consensus GTGCTCCAAGTCTAGGGAGAGGTCGGGGGTTGACTAAATCTCAATCTAGAAAGGACTTTC
. : . : . : . : . : . :
rJMSF031E20+ CACCATCACAGAATGGTATTGGAAAGAAAGGCATGGATGATATTCAGTTACTTCACACGG
rJMSF028O07+ CACCATCACAGAATGGTATTGGAAAGAAAGGCATGGATGATATTCAGTTACTTCACACGG
rJMSF016O20+ CACCATCACAGAATGGTATTGGAAAGAAAGGCATGGATGATATTCAGTTACTTCACACGG
____________________________________________________________
consensus CACCATCACAGAATGGTATTGGAAAGAAAGGCATGGATGATATTCAGTTACTTCACACGG
. : . : . : . : . : . :
rJMSF031E20+ ATACATTAATTAAGGAGGTGGAGAGGGTATTTGGTGTCAGCAATCCTGATCCTCTAGAGG
rJMSF028O07+ ATACATTAATTAAGGAGGTGGAGAGGGTATTTGGTGTCAGCAATCCTGATCCTCTAGAGG
rJMSF016O20+ ATACATTAATTAAGGAGGTGGAGAGGGTATTTGGTGTCAGCAATCCTGATCCTCTAGAGG
____________________________________________________________
consensus ATACATTAATTAAGGAGGTGGAGAGGGTATTTGGTGTCAGCAATCCTGATCCTCTAGAGG
. : . : . : . : . : . :
rJMSF031E20+ TTGAAAAGGCAAAGAAAGTGCTTAAGGAGCATGAACAAGCACTTATAGATGCTATTCAAA
rJMSF028O07+ TTGAAAAGGCAAAGAAAGTGCTTAAGGAGCATGAACAAGCACTTATAGATGCTATTCAAA
rJMSF016O20+ TTGAAAAGGCAAAGAAAGTGCTTAAGGAGCATGAACAAGCACTTATAGATGCTATTCAAA
____________________________________________________________
consensus TTGAAAAGGCAAAGAAAGTGCTTAAGGAGCATGAACAAGCACTTATAGATGCTATTCAAA
. : . : . : . : . : . :
rJMSF031E20+ GGCTAGGAGAGATTTCAGATGGCGAAAGTGATGAACGTGGTCATTTCATGCATGGGCAAG
rJMSF028O07+ GGCTAGGAGAGATTTCAGATGGCGAAAGTGATGAACGTGGTCATTTCATGCATGGGCAAG
rJMSF016O20+ GGCTAGGAGAGATTTCAGATGGCGAAAGTGATGAACGTGGTCATTTCATGCATGGGCAAG
____________________________________________________________
consensus GGCTAGGAGAGATTTCAGATGGCGAAAGTGATGAACGTGGTCATTTCATGCATGGGCAAG
. : . : . : . : . : . :
rJMSF031E20+ AATGATGACGTGATGACCTGATGGCAATGACTAGCATTGTAGTTGGGGGGAACTATTTAA
rJMSF028O07+ AATGATGACGTGATGACCTGATGGCAATGACTAGCATTGTAGTTGGGGGGAACTATTTAA
rJMSF016O20+ AATGATGACGTGATGACCTGATGGCAATGACTAGCATTGTAGTTGGGGGGAACTATTTAA
____________________________________________________________
consensus AATGATGACGTGATGACCTGATGGCAATGACTAGCATTGTAGTTGGGGGGAACTATTTAA
. : . : . : . : . : . :
rJMSF031E20+ ACTAATGGAGCAGGGATATATCAGGCTTTTGGTGGGTTTTCCAGTGTTTAAAATGGCAGA
rJMSF028O07+ ACTAATGGAGCAGGGATATATCAGGCTTTTGGTGGGTTTTCCAGTGTTTAAAATGGCAGA
rJMSF016O20+ ACTAATGGAGCAGGGATATATCAGGCTTTTGGTGGGTTTTCCAGTGTTTAAAATGGCAGA
____________________________________________________________
consensus ACTAATGGAGCAGGGATATATCAGGCTTTTGGTGGGTTTTCCAGTGTTTAAAATGGCAGA
. : . : . : . : . : . :
rJMSF031E20+ ATGAATGTTAGGCATGTTGTATGATGCCACCTTCAAGTGTCACTGTACTAACAATGATCC
rJMSF028O07+ ATGAATGTTAGGCATGTTGTATGATGCCACCTTCAAGTGTCACTGTACTAACAATGATCC
rJMSF016O20+ ATGAATGTTAGGCATGTTGTATGATGCCACCTTCAAGTGTCACTGTACTAACAATGATCC
____________________________________________________________
consensus ATGAATGTTAGGCATGTTGTATGATGCCACCTTCAAGTGTCACTGTACTAACAATGATCC
. : . : . : . : . : . :
rJMSF031E20+ TTTTAGTGTTAGGGTTGGGTGAATAGGTCAACTTGAAGATTGTTTTCTATAGCGGCTGTT
rJMSF028O07+ TTTTAGTGTTAGGGTTGGGTGAATAGGTCAACTTGAAGATTGTTTTCTATAGTGGCTGTT
rJMSF016O20+ TTTTAGTGTTAGGGTTGGGTGAATAGGTCAACTTGAAGATTGTTTTCTATAGTGGCTGTT
____________________________________________________________
consensus TTTTAGTGTTAGGGTTGGGTGAATAGGTCAACTTGAAGATTGTTTTCTATAGTGGCTGTT
. : . : . : . : . : . :
rJMSF031E20+ TAGTGCCTTTTGTAAAATTGTTA-CGGTAGAGATTAAACATGTGATGGTGTACAAATTT
rJMSF028O07+ TAGTGCCTTTTGTAAAATTGTTACCGGTAGAGATTAANCATGTGATGGTGTACAAATTT
rJMSF016O20+ TAGTGCCTTTTGTAAAATTGTTA-CGGTAGAGATTAAACATGTGATGGTGTACAAATTTA
____________________________________________________________
consensus TAGTGCCTTTTGTAAAATTGTTA-CGGTAGAGATTAAACATGTGATGGTGTACAAATTTA