| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF019O16 | Sequence | 575 | 005030 (5) | ref|XP_009602601.1| | 3e-26 | PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-2.1-like [Nicotiana | 744 | 005651 (5) | gb|AHN63210.1| | 1e-76 | transcription factor TGA2 [Salvia miltiorrhiza f. alba] |
| JMSF003O03 | Sequence | 334 | 005030 (5) | 780 | 005651 (5) | gb|AHN63210.1| | 4e-87 | transcription factor TGA2 [Salvia miltiorrhiza f. alba] | |||
| JMSF016B13 | Sequence | 518 | 005030 (5) | ref|XP_009602601.1| | 1e-24 | PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-2.1-like [Nicotiana | 793 | 005651 (5) | gb|AHN63210.1| | 5e-87 | transcription factor TGA2 [Salvia miltiorrhiza f. alba] |
| JMSF016E12 | Sequence | 519 | 005030 (5) | ref|XP_009602601.1| | 5e-25 | PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-2.1-like [Nicotiana | 795 | 005651 (5) | gb|AHN63210.1| | 2e-90 | transcription factor TGA2 [Salvia miltiorrhiza f. alba] |
| JMSF025M24 | Sequence | 644 | 005030 (5) | ref|XP_009602601.1| | 2e-27 | PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-2.1-like [Nicotiana | 817 | 005651 (5) | ref|XP_009759888.1| | 2e-127 | PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-2.1 [Nicotiana sylve |
This contig is upended
. : . : . : . : . : . :
rJMSF025M24+ TTGGCATTTGATGTGGAATATGGACGGT
____________________________________________________________
consensus TTGGCATTTGATGTGGAATATGGACGGT
. : . : . : . : . : . :
rJMSF025M24+ GGTTGGAAGAGCAAAATAGGCATATTAATGAATTAAGGACAGCGGTGAATGCACACGCAA
____________________________________________________________
consensus GGTTGGAAGAGCAAAATAGGCATATTAATGAATTAAGGACAGCGGTGAATGCACACGCAA
. : . : . : . : . : . :
rJMSF025M24+ GTGACACTGATCTGCGGACTATTGCTGACAATGTCAAAGCGCACTTTGATGAAATTTACA
rJMSF016B13+ TTGCTGACAATGTCAAAGCGCACTTTGATGAAATTTACA
rJMSF003O03+ CAAAGCGCACTTTGATGAAATTTACA
rJMSF016E12+ ACTTTGATGAAATTTACA
____________________________________________________________
consensus GTGACACTGATCTGCGGACTATTGCTGACAATGTCAAAGCGCACTTTGATGAAATTTACA
. : . : . : . : . : . :
rJMSF025M24+ GGCTGAAA-GGAAATGCGGCCAAAGCCGATGTC-TTCCATGTATTGTCGGGAATGTGGAA
rJMSF016B13+ GGCTGAAAGGGAAATGCGGCCAAAGCCGATGTCTTTCCATGTATTGTCGGGAATGTGGAA
rJMSF003O03+ GGCTGAAA-GGAAATGCGGCCAAAGCCGATGTCTTTCCATGTATTGTCGGGAATGTGGAA
rJMFF019O16+ TTCCATGTATTGTCGGGAATGTGGAA
rJMSF016E12+ GGCTGAAA-GGAAATGCGGCCAAAAGCCGATGTCTTCCATGTATTGTCGGGAATGTGGAA
____________________________________________________________
consensus GGCTGAAA-GGAAATGCGGCCAAAGCCGATGTCTTTCCATGTATTGTCGGGAATGTGGAA
. : . : . : . : . : . :
rJMSF025M24+ AACCCCTGCA-GAGCGGTGTTTTATGTGGATCGGTGGCTTTCGTCCTTCTGAACTTCTTA
rJMSF016B13+ AACCCCTGCA-GAGCGGTGTTTTATGTGGATCGGTGGCTTTCGTCCTTCTGAACTTCTTA
rJMSF003O03+ AACCCCTGCA-GAGCGGTGTTTTATGTGGATCGGTGGCTTTCGTCCTTCTGAACTTCTTA
rJMFF019O16+ AACCCCTGCAGGAGCGGTGTTTTATGTGGATCGGTGGCTTTCGTCCTTCTGAACTTCTTA
rJMSF016E12+ AACCCCTGCA-GAGCGGTGTTTTATGTGGATCGGTGGCTTTCGTCCTTCTGAACTTCTTA
____________________________________________________________
consensus AACCCCTGCA-GAGCGGTGTTTTATGTGGATCGGTGGCTTTCGTCCTTCTGAACTTCTTA
. : . : . : . : . : . :
rJMSF025M24+ AGCTTCTTGTGAATCAATTGGAACCTCTAACTGAGCAGCAATCAGAAGGGATATACAGCT
rJMSF016B13+ AGCTTCTTGTGAATCAATTGGAACCTCTAACTGAGCAGCAATCAGAAGGGATATACAGCT
rJMSF003O03+ AGCTTCTTGTGAATCAATTGGAACCTCTAACTGAGCAGCAATCAGAAGGGATATACAGCT
rJMFF019O16+ AGCTTCTTGTGAATCAATTGGAACCTCTAACTGAGCAGCAATCAGAAGGGATATACAGCT
rJMSF016E12+ AGCTTCTTGTGAATCAATTGGAACCTCTAACTGAGCAGCAATCAGAAGGGATATACAGCT
____________________________________________________________
consensus AGCTTCTTGTGAATCAATTGGAACCTCTAACTGAGCAGCAATCAGAAGGGATATACAGCT
. : . : . : . : . : . :
rJMSF025M24+ TGCAGCAATCGTCCCACGAGGCCGAAGATGCACTTTCACAAGGAATGGATGCATTGCAGC
rJMSF016B13+ TGCAGCAATCGTCCCACGAGGCCGAAGATGCACTTTCACAAGGAATGGATGCATTGCAGC
rJMSF003O03+ TGCAGCAATCGTCCCACGAGGCCGAAGATGCACTTTCACAAGGAATGGATGCATTGCAGC
rJMFF019O16+ TGCAGCAATCGTCCCACGAGGCCGAAGATGCACTTTCACAAGGAATGGATGCATTGCAGC
rJMSF016E12+ TGCAGCAATCGTCCCACGAGGCCGAAGATGCACTTTCACAAGGAATGGATGCATTGCAGC
____________________________________________________________
consensus TGCAGCAATCGTCCCACGAGGCCGAAGATGCACTTTCACAAGGAATGGATGCATTGCAGC
. : . : . : . : . : . :
rJMSF025M24+ AATCTCTTGCGGAAACATTGGCCAAGGGAGCTTCCGGTCCTGAAGGGTCATCGGGAAATG
rJMSF016B13+ AATCTCTTGCGGAAACATTGGCCAAGGGAGCTTCCGGTCCTGAAGGGTCATCGGGAAATG
rJMSF003O03+ AATCTCTTGCGGAAACATTGGCCAAGGGAGCTTCCGGTCCTGAAGGGTCATCGGGAAATG
rJMFF019O16+ AATCTCTTGCGGAAACATTGGCCAAGGGAGCTTCCGGTCCTGAAGGGTCATCGGGAAATG
rJMSF016E12+ AATCTCTTGCGGAAACATTGGCCAAGGGAGCTTCCGGTCCTGAAGGGTCATCGGGAAATG
____________________________________________________________
consensus AATCTCTTGCGGAAACATTGGCCAAGGGAGCTTCCGGTCCTGAAGGGTCATCGGGAAATG
. : . : . : . : . : . :
rJMSF025M24+ TTGCTAATTACATGGGGCAAATGGCAATGGCCATGGGAAAATTAGGCACCCTTGAAGGTT
rJMSF016B13+ TTGCTAATTACATGGGGCAAATGGCAATGGCCATGGGAAAATTAGGCACCCTTGAAGGTT
rJMSF003O03+ TTGCTAATTACATGGGGCAAATGGCAATGGCCATGGGAAAATTAGGCACCCTTGAAGGTT
rJMFF019O16+ TTGCTAATTACATGGGGCAAATGGCAATGGCCATGGGAAAATTAGGCACCCTTGAAGGTT
rJMSF016E12+ TTGCTAATTACATGGGGCAAATGGCAATGGCCATGGGAAAATTAGGCACCCTTGAAGGTT
____________________________________________________________
consensus TTGCTAATTACATGGGGCAAATGGCAATGGCCATGGGAAAATTAGGCACCCTTGAAGGTT
. : . : . : . : . : . :
rJMSF025M24+ TCCTCCGCCAGGCGGATAACTTGCGACAACAGACATTGCAGCAAATGCACCGGGTATTGA
rJMSF016B13+ TCCTCCGCCAGGCGGATAACTTGCGACAACAGACATTGCAGCAAATGCACCGGGTATTGA
rJMSF003O03+ TCCTCCGCCAGGCGGATAACTTGCGACAACAGACATTGCAGCAAATGCACCGGGTATTGA
rJMFF019O16+ TCCTCCGCCAGGCGGATAACTTGCGACAACAGACATTGCAGCAAATGCACCGGGTATTGA
rJMSF016E12+ TCCTCCGCCAGGCGGATAACTTGCGACAACAGACATTGCAGCAAATGCACCGGGTATTGA
____________________________________________________________
consensus TCCTCCGCCAGGCGGATAACTTGCGACAACAGACATTGCAGCAAATGCACCGGGTATTGA
. : . : . : . : . : . :
rJMSF025M24+ CTACCCGACAATCAGCCCGTTCCCTTCTTGCCATACACGACTATTTCTCCCGCCTTCGTG
rJMSF016B13+ CTACCCGACAATCAGCCCGTTCCCTTCTTGCCATACACGACTATTTCTCCCGCCTTCGTG
rJMSF003O03+ CTACCCGACAATCAGCCCGTTCCCTTCTTGCCATACACGACTATTTCTCCCGCCTTCGTG
rJMFF019O16+ CTACCCGACAATCAGCCCGTTCCCTTCTTGCCATACACGACTATTTCTCCCGCCTTCGTG
rJMSF016E12+ CTACCCGACAATCAGCCCGTTCCCTTCTTGCCATACACGACTATTTCTCCCGCCTTCGTG
____________________________________________________________
consensus CTACCCGACAATCAGCCCGTTCCCTTCTTGCCATACACGACTATTTCTCCCGCCTTCGTG
. : . : . : . : . : . :
rJMSF025M24+ CTCTCAGCTCTCTTTGGCTTGCAAGGCCACACGAGTGATAAACCGCCCATTTGCTTGTGG
rJMSF016B13+ CTCTCAGCTCTCTTTGGCTTGCAAGGCCACACGAGTGATAAACCGCCCATTTGCTTGTGG
rJMSF003O03+ CTCTCAGCTCTCTTTGGCTTGCAAGGCCACACGAGTGATAAACCGCCCATTTGCTTGTGG
rJMFF019O16+ CTCTCAGCTCTCTTTGGCTTGCAAGGCCACACGAGTGATAAACCGCCCATTTGCTTGTGG
rJMSF016E12+ CTCTCAGCTCTCTTTGGCTTGCAAGGCCACACGAGTGATAAACCGCCCATTTGCTTGTGG
____________________________________________________________
consensus CTCTCAGCTCTCTTTGGCTTGCAAGGCCACACGAGTGATAAACCGCCCATTTGCTTGTGG
. : . : . : . : . : . :
rJMSF025M24+ ATAAGGAAACCCCGTTCGATCCTCTGAAGACCCAGAAACAAAACACAAGGTGGCATCTGT
rJMSF016B13+ ATAAGGAAACCCCGTTCGATCCTCTGAAGACCCAGAAACAAAACACAAGGTGGCATCTGT
rJMSF003O03+ ATAAGGAAACCCCGTTCGATCCTCTGAAGACCCAGAAACAAAACACAAGGTGGCATCTGT
rJMFF019O16+ ATAAGGAAACCCCGTTCGATCCTCTGAAGACCCAGAAACAAAACACAAGGTGGCATCTGT
rJMSF016E12+ ATAAGGAAACCCCGTTCGATCCTCTGAAGACCCAGAAACAAAACACAAGGTGGCATCTGT
____________________________________________________________
consensus ATAAGGAAACCCCGTTCGATCCTCTGAAGACCCAGAAACAAAACACAAGGTGGCATCTGT
. : . : . : . : . : . :
rJMSF025M24+ TGTGATTTATCTGTGCATGTAGAAATATATGATTTGTAGCATATATATGTCTGTACTCTA
rJMSF016B13+ TGTGATTTATCTGTGCATGTAGAAATATATGATTTGTAGCATATATATGTCTGTACTCTA
rJMSF003O03+ TGTGATTTATCTGTGCATGTAGAAATATATGATTTGTAGCATATATATGTCTGTACTCTA
rJMFF019O16+ TGTGATTTATCTGTGCATGTAGAAATATATGATTTGTAGCATATATATGTCTGTACTCTA
rJMSF016E12+ TGTGATTTATCTGTGCATGTAGAAATATATGATTTGTAGCATATATATGTCTGTACTCTA
____________________________________________________________
consensus TGTGATTTATCTGTGCATGTAGAAATATATGATTTGTAGCATATATATGTCTGTACTCTA
. : . : . : . : . : . :
rJMSF025M24+ ATTTGATCCTCT
rJMSF016B13+ ATTTGATCCTCTGTATTCTGTAACAATAGGAATCAATAATGTGAAAATGTTGTCTGGACA
rJMSF003O03+ ATTTGATCCTCTGTATTCTGTAACAATAGGAATCAATAATGTGAAAATGTTGTCTGGACA
rJMFF019O16+ ATTTGATCCTCTGTATTCTGTAACAATAGGAATCAATAATGTGAAAATGTTGTCTGGACA
rJMSF016E12+ ATTTGATCCTCTGTATTCTGTAACAATAGGAATCAATAATGTGAAAATGTTGTCTGGACA
____________________________________________________________
consensus ATTTGATCCTCTGTATTCTGTAACAATAGGAATCAATAATGTGAAAATGTTGTCTGGACA
. : . : . : . : . : . :
rJMSF016B13+ AGGGAAA-CAGTAGATAGGATCTATCTGCAGAAATA
rJMSF003O03+ AGGGAAACCAGTAGATAGGATCTATCTGCAGAAATA
rJMFF019O16+ AGGGAAA-CAGTAGATAGGATCTATCTGCAGAAATATGTAAAGAGAAAAATAATCAATA
rJMSF016E12+ AGGGAAA-CAGTAGATAGGATCTATCTGCAGAAATATGTAAAGAGAAAAATAATCAATAT
____________________________________________________________
consensus AGGGAAA-CAGTAGATAGGATCTATCTGCAGAAATATGTAAAGAGAAAAATAATCAATAT