| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF013P22 | Sequence | 322 | 010752 (5) | 697 | 005644 (4) | ref|XP_010316485.1| | 6e-91 | PREDICTED: glutamate receptor 3.6 isoform X3 [Solanum lycopersicum] | |||
| JMSF029N09 | Sequence | 414 | 010752 (5) | ref|XP_009772309.1| | 3e-07 | PREDICTED: glutamate receptor 3.6-like, partial [Nicotiana sylvestris] | 715 | 005644 (4) | ref|XP_009796243.1| | 2e-96 | PREDICTED: LOW QUALITY PROTEIN: glutamate receptor 3.3-like, partial [Nicotiana |
| JMSF032G09 | Sequence | 664 | 010752 (5) | ref|XP_009772309.1| | 1e-75 | PREDICTED: glutamate receptor 3.6-like, partial [Nicotiana sylvestris] | 744 | 005644 (4) | ref|XP_009796243.1| | 6e-98 | PREDICTED: LOW QUALITY PROTEIN: glutamate receptor 3.3-like, partial [Nicotiana |
| JMSF046F11 | Sequence | 199 | 010752 (5) | 176 | 005644 (4) | ||||||
This contig is upended
. : . : . : . : . : . :
rJMSF032G09+ TGAAGAACTTGGCATTC
____________________________________________________________
consensus TGAAGAACTTGGCATTC
. : . : . : . : . : . :
rJMSF032G09+ ACCCATCTAGACTCGNTGCTCTTAACCTGCCTGAAGATTATGTCAAGGCTTTAAAGAACG
____________________________________________________________
consensus ACCCATCTAGACTCGNTGCTCTTAACCTGCCTGAAGATTATGTCAAGGCTTTAAAGAACG
. : . : . : . : . : . :
rJMSF032G09+ GCCCCAAAAATGGCGGTGTTATGGCAGTGGTCGATGAACGTGCATACATGGAACTTTTTC
____________________________________________________________
consensus GCCCCAAAAATGGCGGTGTTATGGCAGTGGTCGATGAACGTGCATACATGGAACTTTTTC
. : . : . : . : . : . :
rJMSF032G09+ TCTCAACACATTGCGAGTTCAGTATTGTTGGTCAAGAGTTCCAAAAAAATGGATGGGGAT
____________________________________________________________
consensus TCTCAACACATTGCGAGTTCAGTATTGTTGGTCAAGAGTTCCAAAAAAATGGATGGGGAT
. : . : . : . : . : . :
rJMSF029N09+ GCCTTCCCGAAGGACTCTCCTCTGGCGGTTGACATGTCAACTGCGATTCTGAAACTGT
rJMSF032G09+ TTGCCTTCCCGAAGGACTCTCCTCTGGCGGTTGACATGTCAACTGCGATTCTGAAACTGT
rJMSF013P22+ GCCTTCCCGAAGGACTCTCCTCTGGCGGTTGACATGTCAACTGCGATTCTGAAACTGT
____________________________________________________________
consensus TTGCCTTCCCGAAGGACTCTCCTCTGGCGGTTGACATGTCAACTGCGATTCTGAAACTGT
. : . : . : . : . : . :
rJMSF029N09+ CAGAAAACGGGGAGCTTCAGAGGATCCACGACAAATGGCTGCTGAGGAGCGCCTGTACCT
rJMSF032G09+ CAGAAAACGGGGAGCTTCAGAGGATCCACGACAAATGGCTGCTGAGGAGCGCCTGTACCT
rJMSF013P22+ CAGAAAACGGGGAGCTTCAGAGGATCCACGACAAATGGCTGCTGAGGAGCGCCTGTACCT
____________________________________________________________
consensus CAGAAAACGGGGAGCTTCAGAGGATCCACGACAAATGGCTGCTGAGGAGCGCCTGTACCT
. : . : . : . : . : . :
rJMSF029N09+ CGCAAAACACAAAGCTCGAAGTGGACCGCCTCGAGCTGAAGAGCTTCGCGGGTCTCTTTT
rJMSF032G09+ CGCAAAACACAAAGCTCGAAGTGGACCGCCTCGAGCTGAAGAGCTTCGCGGGTCTCTTTT
rJMSF013P22+ CGCAAAACACAAAGCTCGAAGTGGACCGCCTCGAGCTGAAGAGCTTCGCGGGTCTCTTTT
____________________________________________________________
consensus CGCAAAACACAAAGCTCGAAGTGGACCGCCTCGAGCTGAAGAGCTTCGCGGGTCTCTTTT
. : . : . : . : . : . :
rJMSF029N09+ CCATATGCGCGGTGGCGTGCTTCTTAGCTCTGCTCGTGTACTTCATACTGCTGACACGCC
rJMSF032G09+ CCATATGCGCGGTGGCGTGCTTCTTAGCTCTGCTCGTGTACTTCATACTGCTGACACGCC
rJMSF013P22+ CCATATGCGCGGTGGCGTGCTTCTTAGCTCTGCTCGTGTACTTCATACTGCTGACACGCC
____________________________________________________________
consensus CCATATGCGCGGTGGCGTGCTTCTTAGCTCTGCTCGTGTACTTCATACTGCTGACACGCC
. : . : . : . : . : . :
rJMSF029N09+ AGTTCACGAGGTATAGCTCTGATCCCGAGCAGACACCTTCTAGTGGTGGAAGCTCACGAT
rJMSF032G09+ AGTTCACGAGGTATAGCTCTGATCCCGAGCAGACACCTTCTAGTGGTGGAAGCTCACGAT
rJMSF013P22+ AGTTCACGAGGTATAGCTCTGATCCCGAGCAGACACCTTCTAGTGGTGGAAGCTCACGAT
____________________________________________________________
consensus AGTTCACGAGGTATAGCTCTGATCCCGAGCAGACACCTTCTAGTGGTGGAAGCTCACGAT
. : . : . : . : . : . :
rJMSF046F11+ TCGACGAAAAAGAAGAGACAGCGAAAAGCC
rJMSF029N09+ CAGCTCGACTGCAGACTTTCCTCTCTTTTGTCGACGAAAAAGAAGAGACAGCGAAAAGCC
rJMSF032G09+ CAGCTCGACTGCAGACTTTCCTCTCTTTTGTCGACGAAAAAGAAGAGACAGCGAAAAGCC
rJMSF013P22+ CAGCTCGACTGCAGACTTTCCTCTCTTTTGTCGACGAAAAAGAAGAGACAGCGAAAAGCC
____________________________________________________________
consensus CAGCTCGACTGCAGACTTTCCTCTCTTTTGTCGACGAAAAAGAAGAGACAGCGAAAAGCC
. : . : . : . : . : . :
rJMSF046F11+ GGTCCATCAAGAGGAAGCAGATGGAGGGAGATTCAGCTAGNAGCATNGNCGATGATGANT
rJMSF029N09+ GGTCCATCAAGAGGAAGCAGATGGAGGGAGATTCAGCTAGGAGCATTGATGATGATGATT
rJMSF032G09+ GGTCCATCAAGAGGAAGCAGATGGAGGGAGATTCAGCTAGGAGCATTGATGATGATGATT
rJMSF013P22+ GGTCCATCAAGAGGAAGCAGATGGAGGGAGATTCAGCTAGGAGCATTGATGATGATGATT
____________________________________________________________
consensus GGTCCATCAAGAGGAAGCAGATGGAGGGAGATTCAGCTAGGAGCATTGATGATGATGATT
. : . : . : . : . : . :
rJMSF046F11+ CATANGTGAATGGTTCTTCCAGGAGTATNGGCCATTCACAGGTGTTCTCAAACAGAGCTT
rJMSF029N09+ CATATGTGAATGGTTCTTCCAGGAGTATAGGCCATTCACAGGTGTTCTCAAACAGAGCTT
rJMSF032G09+ CATATGTGAATGGTTCTTCCAGGAGTATAGGCCGTTCACAGGTGTTCTCAAACAGAGCTT
rJMSF013P22+ CATATGTGAATGGTTCTTCCAGGAGTATAGGCCATTCACAGGTGTTCTCAAACAGAGCTT
____________________________________________________________
consensus CATATGTGAATGGTTCTTCCAGGAGTATAGGCCATTCACAGGTGTTCTCAAACAGAGCTT
. : . : . : . : . : . :
rJMSF046F11+ AGAGTCTTGGAAATTCTCAGTCTGTC
rJMSF029N09+ AGAGTCTTGGAAATTCTCAGTCTGTCTTTTTTTAACAATAATTG
rJMSF032G09+ AGAGTCTTGGAAATTCTCAGTCTGTCTTTTTTTAACAATAATTGTGTGCTTCT
rJMSF013P22+ AGAGTCTTGGAAATTCTCAGTCTGTCTTTTTTTAACAATAATTGTGTGCTTCTTAAATGT
____________________________________________________________
consensus AGAGTCTTGGAAATTCTCAGTCTGTCTTTTTTTAACAATAATTGTGTGCTTCTTAAATGT