Contig 005634:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF011N05Sequence405024116ref|XP_009623174.1|2e-11PREDICTED: uncharacterized protein LOC104114427 isoform X1 [Nicotiana tomentosi677005634 (2)ref|XP_006844529.1|3e-13hypothetical protein AMTR_s00016p00160930 [Amborella trichopoda] gb|ERN06204.1|
JMSF036H05Sequence703024237emb|CDO98314.1|7e-37unnamed protein product [Coffea canephora]773005634 (2)ref|XP_009767496.1|5e-81PREDICTED: uncharacterized protein LOC104218653 isoform X2 [Nicotiana sylvestri

Alignment

This contig is upended


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rJMSF036H05-                                                                    TG
                      ____________________________________________________________
consensus                                                                       TG
 
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rJMSF036H05-          CNCATACTGGTTTTGAACCACACAACCTATCTCAAATTATAACTAATTACATTTCATTAA
                      ____________________________________________________________
consensus             CNCATACTGGTTTTGAACCACACAACCTATCTCAAATTATAACTAATTACATTTCATTAA
 
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rJMSF036H05-          CCCCTTCTTACTTTTGTAGACTACCTCTGCTTTGTAATGCAATAAAACCGACAAAAACAA
                      ____________________________________________________________
consensus             CCCCTTCTTACTTTTGTAGACTACCTCTGCTTTGTAATGCAATAAAACCGACAAAAACAA
 
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rJMSF036H05-          TAAAAAGCACCATGTGAAAAATGTATAACGGAGAAAATGTCCTTAAAATTTAGGGAAAGA
                      ____________________________________________________________
consensus             TAAAAAGCACCATGTGAAAAATGTATAACGGAGAAAATGTCCTTAAAATTTAGGGAAAGA
 
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rJMSF036H05-          TGAGAAATTTGGAAATGATATGAAAACTGGTGAAGAAGAAATTGATCATCACGACGATGC
                      ____________________________________________________________
consensus             TGAGAAATTTGGAAATGATATGAAAACTGGTGAAGAAGAAATTGATCATCACGACGATGC
 
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rJMSF036H05-          CTCTGACTCAGCAGCAGCCGCTTTGGGGTCAAGCATAGAAGGCTGATCGATTTCTTTGCG
                      ____________________________________________________________
consensus             CTCTGACTCAGCAGCAGCCGCTTTGGGGTCAAGCATAGAAGGCTGATCGATTTCTTTGCG
 
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rJMSF036H05-          AGATGCTTCCCACAGCTGTTGTTCTATCCCCAATTTCCTGAGCTCTGTCAAGCCCCTTTC
rJMSF011N05+                                                     TCTGTCAAGCCCCTTTC
                      ____________________________________________________________
consensus             AGATGCTTCCCACAGCTGTTGTTCTATCCCCAATTTCCTGAGCTCTGTCAAGCCCCTTTC
 
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rJMSF036H05-          AACATCAACAGCATCGTGTGTCGTTGGTGAAAGGCCACTAGGCCCACTATGGCTTGCACT
rJMSF011N05+          AACATCAACAGCATCGTGTGTCGTTGGTGAANGGCCACTAGGCCCACTATGGCTTGCACT
                      ____________________________________________________________
consensus             AACATCAACAGCATCGTGTGTCGTTGGTGAAAGGCCACTAGGCCCACTATGGCTTGCACT
 
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rJMSF036H05-          ACGATTTATCCAGAATTGAAGTCTATCTTCTGCAATATCCTCTTCAACACCATGTACTTT
rJMSF011N05+          ACGANTTATCCAGAATTGAAGTCTATCTTCTGCAATATCCTCTTCAACNCCATGTNCTTT
                      ____________________________________________________________
consensus             ACGATTTATCCAGAATTGAAGTCTATCTTCTGCAATATCCTCTTCAACACCATGTACTTT
 
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rJMSF036H05-          AGCTCTTCTCCAGAAATATGTAAGCCAAGCCTCCTTGAAAAGAACATCTTCTGCCTCCTC
rJMSF011N05+          AGCTCTTCTCCAGNAATANGTANGCCAAGCCTCCTTGAAANGAACATNTTCTGCCTCCTC
                      ____________________________________________________________
consensus             AGCTCTTCTCCAGAAATATGTAAGCCAAGCCTCCTTGAAAAGAACATCTTCTGCCTCCTC
 
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rJMSF036H05-          CTTACTTAATTCGTATGCATCAGTGAATTTAGAGTCACC                     
rJMSF011N05+          CTTANTTAATTCGTATGCATCAGTGAANTTAGAGTCACCNGANGANTTANCATNNGCAAG
                      ____________________________________________________________
consensus             CTTACTTAATTCGTATGCATCAGTGAATTTAGAGTCACCNGANGANTTANCATNNGCAAG
 
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rJMSF011N05+          GAAATAAACCCAACACATACTTAATGNCTATAATTAAAGTTTGCATATCACAAAAAGAAA
                      ____________________________________________________________
consensus             GAAATAAACCCAACACATACTTAATGNCTATAATTAAAGTTTGCATATCACAAAAAGAAA
 
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rJMSF011N05+          AATCTCGTAAGNATGNNGNNTAATNANGNGGNAAGGTAAAGNGGGAGCAGGGTGTGGCAT
                      ____________________________________________________________
consensus             AATCTCGTAAGNATGNNGNNTAATNANGNGGNAAGGTAAAGNGGGAGCAGGGTGTGGCAT
 
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rJMSF011N05+          CACAAGCAACTAAAAAAAGAATATGCTATCAATCATATAAATCNCNGTTGGCACTTAATG
                      ____________________________________________________________
consensus             CACAAGCAACTAAAAAAAGAATATGCTATCAATCATATAAATCNCNGTTGGCACTTAATG
 
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rJMSF011N05+          CAATCNTTAGCAGAATAAAGGCAATCCTTGCAAGGACAAAATANCCAGTCATGGCAATAA
                      ____________________________________________________________
consensus             CAATCNTTAGCAGAATAAAGGCAATCCTTGCAAGGACAAAATANCCAGTCATGGCAATAA
 
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rJMSF011N05+          AAGTTTTNTCTCCATTCAATGTTGCAAAATACGTTAGGGGGCGCCTAGGCGCCCGAATTT
                      ____________________________________________________________
consensus             AAGTTTTNTCTCCATTCAATGTTGCAAAATACGTTAGGGGGCGCCTAGGCGCCCGAATTT
 
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rJMSF011N05+          TTTATTTTAAAAAAAAATTGTAAAAATTCACTAATAAAACNCTAAGGTTCCCCTNGTTTT
                      ____________________________________________________________
consensus             TTTATTTTAAAAAAAAATTGTAAAAATTCACTAATAAAACNCTAAGGTTCCCCTNGTTTT
 
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rJMSF011N05+          TTCTTACNANCTATATACGTAAGTGGTTGTAAAATTGTTCAAAATATTGTTGAAACCATC
                      ____________________________________________________________
consensus             TTCTTACNANCTATATACGTAAGTGGTTGTAAAATTGTTCAAAATATTGTTGAAACCATC