clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF031J05 | Sequence | 593 | 013179 (9) | ref|XP_004249406.1| | 9e-119 | PREDICTED: coatomer subunit beta-1 [Solanum lycopersicum] ref|XP_010312217.1| PR | 774 | 005618 (3) | ref|XP_010432853.1| | 3e-106 | PREDICTED: coatomer subunit beta-1-like [Camelina sativa] |
JMSF009J17 | Sequence | 400 | 004989 (6) | ref|XP_006348474.1| | 3e-26 | PREDICTED: coatomer subunit beta-1-like [Solanum tuberosum] | 731 | 005618 (3) | ref|XP_010432853.1| | 1e-72 | PREDICTED: coatomer subunit beta-1-like [Camelina sativa] |
JMSF026G05 | Sequence | 680 | 004989 (6) | gb|EYU39437.1| | 8e-103 | hypothetical protein MIMGU_mgv1a0012202mg, partial [Erythranthe guttata] gb|EYU | 785 | 005618 (3) | ref|XP_010432853.1| | 3e-86 | PREDICTED: coatomer subunit beta-1-like [Camelina sativa] |
This contig is upended
. : . : . : . : . : . :
rJMFF031J05+ TCAAGCAAGCAGATAAAAGCAAATATTAAGGTCTCC
____________________________________________________________
consensus TCAAGCAAGCAGATAAAAGCAAATATTAAGGTCTCC
. : . : . : . : . : . :
rJMFF031J05+ TCAACAGAGACTGGAGTCATTTTTGGCAATATTGTGTATGAGACCTCAAAGGTGCATGAA
rJMSF026G05+ AAGGGGCATGAA
____________________________________________________________
consensus TCAACAGAGACTGGAGTCATTTTTGGCAATATTGTGTATGAGACCTCAAAGGTGCATGAA
. : . : . : . : . : . :
rJMFF031J05+ CGGACTGTTGTCGTGCTAAATGACATTCATATTGATATCATGGATTACATCTCCCCAGCT
rJMSF026G05+ CGGACTGTTGTCGTGCTAAATGACATTCATATTGATATCATGGATTACATCTCCCCAGCT
rJMSF009J17+ TCTCCCCAGCT
____________________________________________________________
consensus CGGACTGTTGTCGTGCTAAATGACATTCATATTGATATCATGGATTACATCTCCCCAGCT
. : . : . : . : . : . :
rJMFF031J05+ GTGTGCAGTGATACTGTGTTTAGAACTATGTGGGCAGAATTTGAGTGGGAAAACAAGGTC
rJMSF026G05+ GTGTGCAGTGATACTGTGTTTAGAACTATGTGGGCAGAATTTGAGTGGGAAAACAAGGTC
rJMSF009J17+ GTGTGCAGTGATACTGTGTTTAGAACTATGTGGGCAGAATTTGAGTGGGAAAACAAGGTC
____________________________________________________________
consensus GTGTGCAGTGATACTGTGTTTAGAACTATGTGGGCAGAATTTGAGTGGGAAAACAAGGTC
. : . : . : . : . : . :
rJMFF031J05+ GCTGTAAATACTGTTATTCAAAATGAGAAAGAGTTTCTGGACCATATTATCAAATCAACC
rJMSF026G05+ GCTGTAAATACTGTTATTCAAAATGAGAAAGAGTTTCTGGACCATATTATCAAATCAACC
rJMSF009J17+ GCTGTAAATACTGTTATTCAAAATGAGAAAGAGTTTCTGGACCATATTATCAAATCAACC
____________________________________________________________
consensus GCTGTAAATACTGTTATTCAAAATGAGAAAGAGTTTCTGGACCATATTATCAAATCAACC
. : . : . : . : . : . :
rJMFF031J05+ AATATGAAATGCTTGACTGCTCCGTCTGCTCTAGAAGGTGAATGTGGGTTTCTTGCTGCA
rJMSF026G05+ AATATGAAATGCTTGACTGCTCCGTCTGCTCTAGAAGGTGAATGTGGGTTTCTTGCTGCA
rJMSF009J17+ AATATGAAATGCTTGACTGCTCCGTCTGCTCTAGAAGGTGAATGTGGGTTTCTTGCTGCA
____________________________________________________________
consensus AATATGAAATGCTTGACTGCTCCGTCTGCTCTAGAAGGTGAATGTGGGTTTCTTGCTGCA
. : . : . : . : . : . :
rJMFF031J05+ AACTTGTACGCAAAGAGTGTCTTTGGAGAGGATGCTTTGGTCAATGTGAGCATTGAGAAA
rJMSF026G05+ AACTTGTACGCAAAGAGTGTCTTTGGAGAGGATGCTTTGGTCAATGTGAGCATTGAGAAA
rJMSF009J17+ AACTTGTACGCAAAGAGTGTCTTTGGAGAGGATGCTTTGGTCAATGTGAGCATTGAGAAA
____________________________________________________________
consensus AACTTGTACGCAAAGAGTGTCTTTGGAGAGGATGCTTTGGTCAATGTGAGCATTGAGAAA
. : . : . : . : . : . :
rJMFF031J05+ CAAGCAGATGGGAAGCTTAGCGGCTATATAAGGATTAGGAGCAAAACTCAAGGAATTGCT
rJMSF026G05+ CAAGCAGATGGGAAGCTTAGCGGCTATATAAGGATTAGGAGCAAAACTCAAGGAATTGCT
rJMSF009J17+ CAAGCAGATGGGAAGCTTAGCGGCTATATAAGGATTAGGAGCAAAACTCAAGGAATTGCT
____________________________________________________________
consensus CAAGCAGATGGGAAGCTTAGCGGCTATATAAGGATTAGGAGCAAAACTCAAGGAATTGCT
. : . : . : . : . : . :
rJMFF031J05+ CTCAGCTTGGGGGACAAGATCACTCTCAAGCAGAAAGGAGGCAGTTGATCTAGTCTTGCG
rJMSF026G05+ CTCAGCTTGGGGGACAAGATCACTCTCAAGCAGAAAGGAGGCAGTTGATCTAGTCTTGCG
rJMSF009J17+ CTCAGCTTGGGGGACAAGATCACTCTCAAGCAGAAAGGAGGCAGTTGATCTAGTCTTGCG
____________________________________________________________
consensus CTCAGCTTGGGGGACAAGATCACTCTCAAGCAGAAAGGAGGCAGTTGATCTAGTCTTGCG
. : . : . : . : . : . :
rJMFF031J05+ ATATTTGGGTCAGTCAGTGAACTATACATGTATATCATTTTTTGGGTACATCTGAATCTG
rJMSF026G05+ ATATTTGGGTCAGTCAGTGAACTATACATGTATATCATTTTTTGGGTACATCTGAATCTG
rJMSF009J17+ ATATTTGGGTCAGTCAGTGAACTATACATGTATATCATTTTTTGGGTACATCTGAATCTG
____________________________________________________________
consensus ATATTTGGGTCAGTCAGTGAACTATACATGTATATCATTTTTTGGGTACATCTGAATCTG
. : . : . : . : . : . :
rJMFF031J05+ ATAGGGGACGATGTNAACGGTGATGGGCTTCAAATTCAAGTTTACCCCTGGAAAAGGGTA
rJMSF026G05+ ATAGGGGACGATGTCAACGGTGATGGGCTTCAAATTCAAGTTTACCCCTGGAAAAGGGTA
rJMSF009J17+ ATAGGGGACGATGTCAACGGTGATGGGCTTCAAATTCAAGTTTACCCCTGGAAAAGGGTA
____________________________________________________________
consensus ATAGGGGACGATGTCAACGGTGATGGGCTTCAAATTCAAGTTTACCCCTGGAAAAGGGTA
. : . : . : . : . : . :
rJMFF031J05+ TAACTTTACACTAAACTACACCCTGAATCCCGTATATGCATATTCGTTCTATAGACCTTT
rJMSF026G05+ TAACTTTACACTAAACTACACCCTGAATCCCGTATATGCATATTCGTTCTATAGACCTTT
rJMSF009J17+ TAACTTTACACTAAACTACACCCTGAATCCCGTATATGCATATTCGTTCTATAGACCTTT
____________________________________________________________
consensus TAACTTTACACTAAACTACACCCTGAATCCCGTATATGCATATTCGTTCTATAGACCTTT
. : . : . : . : . : . :
rJMFF031J05+ GATCTTTGGTGATATATTGGCTGTCCTATATATGTCTCCCATTTTCACAGAACTCCAGTT
rJMSF026G05+ GATCTTTGGTGATATATTGGCTGTCCTATATATGTCTCCCATTTTCACAGAACTCCAGTT
rJMSF009J17+ GATCTTTGGTGATATATTGGCTGTCCTATATATGTCTCCCATTTTCACAGAACTCCAGTT
____________________________________________________________
consensus GATCTTTGGTGATATATTGGCTGTCCTATATATGTCTCCCATTTTCACAGAACTCCAGTT
. : . : . : . : . : . :
rJMFF031J05+ ACTTTATGGAACTAAACC
rJMSF026G05+ ACTTTATGGAACTAAACCCCTCATTATTAGCTTAATCCTTGTCTGCTATTTGCTGTATAT
rJMSF009J17+ ACTTTATGGAACTAAACCCCTCATTATTAGCTTAATCCTTGTCTGCTATTTGCTGTATAT
____________________________________________________________
consensus ACTTTATGGAACTAAACCCCTCATTATTAGCTTAATCCTTGTCTGCTATTTGCTGTATAT
. : . : . : . : . : . :
rJMSF026G05+ GAATTCGAGGCTTCAGATTCTTTATTTTGGTGTTGAGAAAACTTCTACAATAT
rJMSF009J17+ GAATTCGAGGCTTCAGATTCTTTATTTTGGTGTTGAGAAAACTTCTACAATATGTATTAT
____________________________________________________________
consensus GAATTCGAGGCTTCAGATTCTTTATTTTGGTGTTGAGAAAACTTCTACAATATGTATTAT