Contig 005609:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF008F08Sequence294012963 (17)gb|ADA67930.1|3e-29putative 60S ribosomal protein L15 [Wolffia arrhiza]742005609 (5)ref|XP_009625183.1|325PREDICTED: uncharacterized protein LOC104116092 [Nicotiana tomentosiformis]
JMSF021H12Sequence620002481 (4)ref|XP_009625183.1|88.6PREDICTED: uncharacterized protein LOC104116092 [Nicotiana tomentosiformis]769005609 (5)ref|XP_009625183.1|335PREDICTED: uncharacterized protein LOC104116092 [Nicotiana tomentosiformis]
JMSF033E01Sequence643002481 (4)ref|XP_009625183.1|88.6PREDICTED: uncharacterized protein LOC104116092 [Nicotiana tomentosiformis]708005609 (5)ref|XP_009625183.1|327PREDICTED: uncharacterized protein LOC104116092 [Nicotiana tomentosiformis]
JMSF042H18Sequence747002481 (4)ref|XP_009625183.1|89.0PREDICTED: uncharacterized protein LOC104116092 [Nicotiana tomentosiformis]791005609 (5)ref|XP_009625183.1|326PREDICTED: uncharacterized protein LOC104116092 [Nicotiana tomentosiformis]
JMSF051G09Sequence663002481 (4)ref|XP_006347799.1|99.4PREDICTED: uncharacterized protein LOC102599811 [Solanum tuberosum]737005609 (5)ref|XP_009625183.1|325PREDICTED: uncharacterized protein LOC104116092 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF021H12+                                          GGCAGTGTGCTCACAGCTACTGACAAAA
rJMSF042H18+                                      TGAGGGCAGTGTGCTCACAGCTACTGACAAAA
                      ____________________________________________________________
consensus                                         TGAGGGCAGTGTGCTCACAGCTACTGACAAAA
 
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rJMSF021H12+          -CAACTGTCCTTAAGCTGCAGGTTGGCTTATTGGGCTTGGGTAGATCACTTCAGAGGGAC
rJMSF051G09+           CAACTGTCCTTAAGCTGCAGGTTGGCTTATTGGGCTTGGGTAGATCACTTCAGAGGGAC
rJMSF033E01+                                             CTTGGGTAGATCACTTCAGAGGGAC
rJMSF042H18+          NCAACTGTCCTTAAGCTGCAGGTTGGCTTATTGGGCTTGGGTAGATCACTTCAGAGGGAC
rJMSF008F08+                                                GGGTAGATCACTTCAGAGGGAC
                      ____________________________________________________________
consensus             NCAACTGTCCTTAAGCTGCAGGTTGGCTTATTGGGCTTGGGTAGATCACTTCAGAGGGAC
 
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rJMSF021H12+          TTGAACCGGATTGCAGAAGTAGCTGATACATCCACACCAGAGGGATTAAGCTATGTATTG
rJMSF051G09+          TTGAACCGGATTGCAGAAGTAGCTGATACATCCACACCAGAGGGATTAAGCTATGTATTG
rJMSF033E01+          TTGAACCGGATTGCAGAAGTAGCTGATACATCCACACCAGAGGGATTAAGCTATGTATTG
rJMSF042H18+          TTGAACCGGATTGCAGAAGTAGCTGATACATCCACACCAGAGGGATTAAGCTATGTATTG
rJMSF008F08+          TTGAACCGGATTGCAGAAGTAGCTGATACATCCACACCAGAGGGATTAAGCTATGTATTG
                      ____________________________________________________________
consensus             TTGAACCGGATTGCAGAAGTAGCTGATACATCCACACCAGAGGGATTAAGCTATGTATTG
 
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rJMSF021H12+          ACAGAGACAACTTTAGCCTTGCTTCGCCATCCTGAATATTGCATCTCAGCTTATTCATCT
rJMSF051G09+          ACAGAGACAACTTTAGCCTTGCTTCGCCATCCTGAATATTGCATCTCAGCTTATTCATCT
rJMSF033E01+          ACAGAGACAACTTTAGCCTTGCTTCGCCATCCTGAATATTGCATCTCAGCTTATTCATCT
rJMSF042H18+          ACAGAGACAACTTTAGCCTTGCTTCGCCATCCTGAATATTGCATCTCAGCTTATTCATCT
rJMSF008F08+          ACAGAGACAACTTTAGCCTTGCTTCGCCATCCTGAATATTGCATCTCAGCTTATTCATCT
                      ____________________________________________________________
consensus             ACAGAGACAACTTTAGCCTTGCTTCGCCATCCTGAATATTGCATCTCAGCTTATTCATCT
 
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rJMSF021H12+          GTTGATGTTAAAAAGAGCATGGAAGCAGGTGAGAAACGGTTCAATCAGCTCTCAATTGAG
rJMSF051G09+          GTTGATGTTAAAAAGAGCATGGAAGCAGGTGAGAAACGGTTCAATCAGCTCTCAATTGAG
rJMSF033E01+          GTTGATGTTAAAAAGAGCATGGAAGCAGGTGAGAAACGGTTCAATCAGCTCTCAATTGAG
rJMSF042H18+          GTTGATGTTAAAAAGAGCATGGAAGCAGGTGAGAAACGGTTCAATCAGCTCTCAATTGAG
rJMSF008F08+          GTTGATGTTAAAAAGAGCATGGAAGCAGGTGAGAAACGGTTCAATCAGCTCTCAATTGAG
                      ____________________________________________________________
consensus             GTTGATGTTAAAAAGAGCATGGAAGCAGGTGAGAAACGGTTCAATCAGCTCTCAATTGAG
 
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rJMSF021H12+          GAGCGTGGTAAATTTGATGAAGAAACACTTGTCAATGTGAATAACATTAAAAGGCAAAGT
rJMSF051G09+          GAGCGTGGTAAATTTGATGAAGAAACACTTGTCAATGTGAATAACATTAAAAGGCAAAGT
rJMSF033E01+          GAGCGTGGTAAATTTGATGAAGAAACACTTGTCAATGTGAATAACATTAAAAGGCAAAGT
rJMSF042H18+          GAGCGTGGTAAATTTGATGAAGAAACACTTGTCAATGTGAATAACATTAAAAGGCAAAGT
rJMSF008F08+          GAGCGTGGTAAATTTGATGAAGAAACACTTGTCAATGTGAATAACATTAAAAGGCAAAGT
                      ____________________________________________________________
consensus             GAGCGTGGTAAATTTGATGAAGAAACACTTGTCAATGTGAATAACATTAAAAGGCAAAGT
 
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rJMSF021H12+          TCGATGAGCCAGAGAGCAAATGCATTCAGCAATGAATATATTGTGGTAACTATCTTGGTG
rJMSF051G09+          TCGATGAGCCAGAGAGCAAATGCATTCAGCAATGAATATATTGTGGTAACTATCTTGGTG
rJMSF033E01+          TCGATGAGCCAGAGAGCAAATGCATTCAGCAATGAATATATTGTGGTAACTATCTTGGTG
rJMSF042H18+          TCGATGAGCCAGAGAGCAAATGCATTCAGCAATGAATATATTGTGGTAACTATCTTGGTG
rJMSF008F08+          TCGATGAGCCAGAGAGCAAATGCATTCAGCAATGAATATATTGTGGTAACTATCTTGGTG
                      ____________________________________________________________
consensus             TCGATGAGCCAGAGAGCAAATGCATTCAGCAATGAATATATTGTGGTAACTATCTTGGTG
 
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rJMSF021H12+          GCTGCTGAAGGTGCTTATAAGCTGCCTACCATTAATGGCAGTGGAGATTTGAAGGAAGCA
rJMSF051G09+          GCTGCTGAAGGTGCTTATAAGCTGCCTACCATTAATGGCAGTGGAGATTTGAAGGAAGCA
rJMSF033E01+          GCTGCTGAAGGTGCTTATAAGCTGCCTACCATTAATGGCAGTGGAGATTTGAAGGAAGCA
rJMSF042H18+          GCTGCTGAAGGTGCTTATAAGCTGCCTACCATTAATGGCAGTGGAGATTTGAAGGAAGCA
rJMSF008F08+          GCTGCTGAAGGTGCTTATAAGCTGCCTACCATTAATGGCAGTGGAGATTTGAAGGAAGCA
                      ____________________________________________________________
consensus             GCTGCTGAAGGTGCTTATAAGCTGCCTACCATTAATGGCAGTGGAGATTTGAAGGAAGCA
 
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rJMSF021H12+          TTGCAAAATATTGCCTCTATTCCCTCAAGTAGAACACTGGCAGTTGAGGTGTTATGGACT
rJMSF051G09+          TTGCAAAATATTGCCTCTATTCCCTCAAGTAGAACACTGGCAGTTGAGGTGTTATGGACT
rJMSF033E01+          TTGCAAAATATTGCCTCTATTCCCTCAAGTAGAACACTGGCAGTTGAGGTGTTATGGACT
rJMSF042H18+          TTGCAAAATATTGCCTCTATTCCCTCAAGTAGAACACTGGCAGTTGAGGTGTTATGGACT
rJMSF008F08+          TTGCAAAATATTGCCTCTATTCCCTCAAGTAGAACACTGGCAGTTGAGGTGTTATGGACT
                      ____________________________________________________________
consensus             TTGCAAAATATTGCCTCTATTCCCTCAAGTAGAACACTGGCAGTTGAGGTGTTATGGACT
 
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rJMSF021H12+          CCACAAAATGAAAATGACACATTATCAGAGCGACAACTTCTGGAAGATTACCCGCTGTTG
rJMSF051G09+          CCACAAAATGAAAATGACACATTATCAGAGCGACAACTTCTGGAAGATTACCCGCTGTTG
rJMSF033E01+          CCACAAAATGAAAATGACACATTATCAGAGCGACAACTTCTGGAAGATTACCCGCTGTTG
rJMSF042H18+          CCACAAAATGAAAATGACACATTATCAGAGCGACAACTTCTGGAAGATTACCCGCTGTTG
rJMSF008F08+          CCACAAAATGAAAATGACACATTATCAGAGCGACAACTTCTGGAAGATTACCCGCTGTTG
                      ____________________________________________________________
consensus             CCACAAAATGAAAATGACACATTATCAGAGCGACAACTTCTGGAAGATTACCCGCTGTTG
 
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rJMSF021H12+          CGGCCTCTGTGACACACCTATAAAGCTACAACTTGTTTCCAATTTGCTCACGATATAGTT
rJMSF051G09+          CGGCCTCTGTGACACACCTATAAAGCTACAACTTGTTTCCAATTTGCTCACGATATAGTT
rJMSF033E01+          CGGCCTCTGTGACACACCTATAAAGCTACAACTTGTTTCCAATTTGCTCACGATATAGTT
rJMSF042H18+          CGGCCTCTGTGACACACCTATAAAGCTACAACTTGTTTCCAATTTGCTCACGATATAGTT
rJMSF008F08+          CGGCCTCTGTGACACACCTATAAAGCTACAACTTGTTTCCAATTTGCTCACGATATAGTT
                      ____________________________________________________________
consensus             CGGCCTCTGTGACACACCTATAAAGCTACAACTTGTTTCCAATTTGCTCACGATATAGTT
 
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rJMSF021H12+          GATTGAAGCATAGCATAGCATAGCATCGCATCGCATCTTTTTGATATCGCAATCAGACTC
rJMSF051G09+          GATTGAAGCATAGCATAGCATAGCATCGCATCGCATCTTTTTGATATCGCAATCAGACTC
rJMSF033E01+          GATTGAAGCATAGCATAGCATAGCATCGCATCGCATCTTTTTGATATCGCAATCAGACTC
rJMSF042H18+          GATTGAAGCATAGCATAGCATAGCATCGCATCGCATCTTTTTGATATCGCAATCAGACTC
rJMSF008F08+          GATTGAAGCATAGCATAGCATAGCATCGCATCGCATCTTTTTGATATCGCAATCAGACTC
                      ____________________________________________________________
consensus             GATTGAAGCATAGCATAGCATAGCATCGCATCGCATCTTTTTGATATCGCAATCAGACTC
 
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rJMSF021H12+          ACAGTATAGATAGATAGAATGATAGATACAATTTGTTACATTACAAAATTTCTGTGGTAC
rJMSF051G09+          ACAGTATAGATAGATAGAATGATAGATACAATTTGTTACATTACAAAATTTCTGTGGTAC
rJMSF033E01+          ACAGTATAGATAGATAGAATGATAGATACAATTTGTTACATTACAAAATTTCTGTGGTAC
rJMSF042H18+          ACAGTATAGATAGATAGAATGATAGATACAATTTGTTACATTACAAAATTTCTGTGGTAC
rJMSF008F08+          ACAGTATAGATAGATAGAATGATAGATACAATTTGTTACATTACAAAATTTCTGTGGTAC
                      ____________________________________________________________
consensus             ACAGTATAGATAGATAGAATGATAGATACAATTTGTTACATTACAAAATTTCTGTGGTAC
 
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rJMSF021H12+          AAGAATCAGCAC                                                
rJMSF051G09+          AAGAATCAG                                                   
rJMSF033E01+          AAGAATCAGCAC                                                
rJMSF042H18+          AAGAATCAGCACATGAGATTCTGTTCATGGAAATGTACG                     
rJMSF008F08+          AAGAATCAGCACATGAGATTCTGTTCATGGAAATGTACGTGTATATAAATGCCTGCCCAC
                      ____________________________________________________________
consensus             AAGAATCAGCACATGAGATTCTGTTCATGGAAATGTACGTGTATATAAATGCCTGCCCAC