Contig 005602:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009J12+                                                                CCACCA
rJMSF007F11+                                             CNNNNNNNNNTNNTANTNNCCACCA
                      ____________________________________________________________
consensus                                                CNNNNNNNNNTNNTANTNNCCACCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009J12+          CCACCNTCAGGCGGNTACAGNTACTACCCCTACACTCCACCTAAGGGGGTGGCGGCGGGA
rJMSF007F11+          CCACCNTCAGGCGGNTACAGNTANTACCCNTACACTCCACNTAAGGGGGTGGCGGCGGGA
                      ____________________________________________________________
consensus             CCACCNTCAGGCGGNTACAGNTACTACCCCTACACTCCACCTAAGGGGGTGGCGGCGGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009J12+          GGCTACTTCCCTCCGCCGCCGTACAAAGCCTACCCTTCCGGCCCGGCGCCGCCACCTCCC
rJMSF007F11+          GGNTACTTCCCTCCGCCGCCGTACAAAGCCTACCCTTCCGGCCCGGCGCCGCCACCTCCC
                      ____________________________________________________________
consensus             GGCTACTTCCCTCCGCCGCCGTACAAAGCCTACCCTTCCGGCCCGGCGCCGCCACCTCCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009J12+          AACCCTATAGTTCCCTACTTCCCATTCTACTTCCACAGCCCTCCACCACCCTCATCATAC
rJMSF007F11+          AACCCTATAGTTCCCTACTTCCCATTCTACTTCCACAGCCCTCCACCACCCTCATCATAC
                      ____________________________________________________________
consensus             AACCCTATAGTTCCCTACTTCCCATTCTACTTCCACAGCCCTCCACCACCCTCATCATAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009J12+          TCCCTCCAATTCAAGCCCTCTTTATCTCTCTTTATCATCCCATTTCTCCTCTTCTTTCTC
rJMSF007F11+          TCCCTCCAATTCAAGCCCTCTTTATCTCTCTTTATCATCCCATTTCTCCTCTTCTTTCTC
                      ____________________________________________________________
consensus             TCCCTCCAATTCAAGCCCTCTTTATCTCTCTTTATCATCCCATTTCTCCTCTTCTTTCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009J12+          ATCTGATATATAGATGGAAGCTAAAATTCAAGAAAATGAAAATAAGTTGTCAGAATCACA
rJMSF007F11+          ATCTGATATATAGATGGAAGCTAAAATTCAAGAAAATGAAAATAAGTTGTCAGAATCACA
                      ____________________________________________________________
consensus             ATCTGATATATAGATGGAAGCTAAAATTCAAGAAAATGAAAATAAGTTGTCAGAATCACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009J12+          GATCTACAGCCTTGCAGGGAAGAAGGAGCCTGGAACTCTTGAAATGCAGCTCTGATCTGA
rJMSF007F11+          GATCTACAGCCTTGCAGGGAAGAAGGAGCCTGGAACTCTTGAAATGCAGCTCTGATCTGA
                      ____________________________________________________________
consensus             GATCTACAGCCTTGCAGGGAAGAAGGAGCCTGGAACTCTTGAAATGCAGCTCTGATCTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009J12+          GCAAGAAGACAAGCTAATAAGCATGAAAGCTTTCTTCTGATCCTGACATGGAGTTAATGA
rJMSF007F11+          GCAAGAAGACAAGCTAATAAGCATGAAAGCTTTCTTCTGATCCTGACATGGAGTTAATGA
                      ____________________________________________________________
consensus             GCAAGAAGACAAGCTAATAAGCATGAAAGCTTTCTTCTGATCCTGACATGGAGTTAATGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF009J12+          TTCCATGGAGTAATCTATCTGTAAACTTATGACAATTATTAGATTTCCTCTTTT      
rJMSF007F11+          TTCCATGGAGTAATCTATCTGTAAACTTATGACAATTATTAGATTTCCTCTTTTTATTCT
                      ____________________________________________________________
consensus             TTCCATGGAGTAATCTATCTGTAAACTTATGACAATTATTAGATTTCCTCTTTTTATTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF007F11+          TTTTGACATTATTCATTAATCAATTTTGCTCATTTTACATACTGTTTCAGTCACTAATAA
                      ____________________________________________________________
consensus             TTTTGACATTATTCATTAATCAATTTTGCTCATTTTACATACTGTTTCAGTCACTAATAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF007F11+          GCCTCTACAAGCTAGGTTCCATTTCCAATTTGTGAAGTTTATATATTCTAAGTGAAGAGT
                      ____________________________________________________________
consensus             GCCTCTACAAGCTAGGTTCCATTTCCAATTTGTGAAGTTTATATATTCTAAGTGAAGAGT