Contig 005601:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN013H09Sequence516005601 (3)emb|CDP14205.1|2e-08unnamed protein product [Coffea canephora]
JMSF007A05Sequence280005601 (3)emb|CDP14205.1|1e-08unnamed protein product [Coffea canephora]505005601 (3)emb|CDP14205.1|2e-08unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMFN013H09+                                                                   GGTA
                      ____________________________________________________________
consensus                                                                     GGTA
 
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JMFN013H09+           AACAAAAGTCTTTTTTATTTATAACAATACTACTATTATTCATCATCAACAGCCGATATG
rJMSF007A05-                                             TTATTCATCATCAACAGCCGATATG
                      ____________________________________________________________
consensus             AACAAAAGTCTTTTTTATTTATAACAATACTACTATTATTCATCATCAACAGCCGATATG
 
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JMFN013H09+           ATGATCTAACTTTGTATTTGCAGAGACCTTTACAAAACCAGTAGGCCTCACAAACTCGAT
rJMSF007A05-          ATGATCTAACTTTGTATTTGCAGAGACCTTTACAAAACCAGTAGGCCTCACAAACTCGAT
                      ____________________________________________________________
consensus             ATGATCTAACTTTGTATTTGCAGAGACCTTTACAAAACCAGTAGGCCTCACAAACTCGAT
 
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JMFN013H09+           AATCAAAGTATGTATACAGAAGAAAAATGGACACATGCAATATATATTAATGACCTGATG
rJMSF007A05-          AATCAAAGTATGTATACAGAAGAAAAATGGACACATGCAATATATATTAATGACCTGATG
                      ____________________________________________________________
consensus             AATCAAAGTATGTATACAGAAGAAAAATGGACACATGCAATATATATTAATGACCTGATG
 
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JMFN013H09+           GCCGGATCGGATCTGATGATCTCCAAATATTTTGGAGAATCCGATCCTTAAATGATATGA
rJMSF007A05-          GCCGGATCGGATCTGATGATCTCCAAATATTTTGGAGAATCCGATCCTTAAATGATATGA
                      ____________________________________________________________
consensus             GCCGGATCGGATCTGATGATCTCCAAATATTTTGGAGAATCCGATCCTTAAATGATATGA
 
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JMFN013H09+           TTACGCCTGATCCTTGTGTTTCTTCTGCAACGGAGGCAAGGCGAGAGACGATGAAGAAAC
JMSF007A05+                               TCTTCTGCAACGGAGNCAAGGCGAGAGACGATGAAGAAAC
rJMSF007A05-          TTACGCCTGATCCTTGTGTTTCTTCTGCAACGGAGGCAAGGCGAGAGACGATGAAGAAAC
                      ____________________________________________________________
consensus             TTACGCCTGATCCTTGTGTTTCTTCTGCAACGGAGGCAAGGCGAGAGACGATGAAGAAAC
 
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JMFN013H09+           AGCCTTGGTGTTGATGGCGACGGCGATGGCTTTGGTGGGCTGCGCCTTTGGCTTTATCGA
JMSF007A05+           AGCCTTGGTGTTGATGGCGACGGCGATGGCTTTGGTGGGCTGCGCCTTTGGCTTTATCGA
rJMSF007A05-          AGCCTTGGTGTTGATGGCGACGGCGATGGCTTTGGTGGGCTGCGCCTTTGGCTTTATCGA
                      ____________________________________________________________
consensus             AGCCTTGGTGTTGATGGCGACGGCGATGGCTTTGGTGGGCTGCGCCTTTGGCTTTATCGA
 
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JMFN013H09+           CGACTCCTCAATTTCATCACTGATCTTCTTCGCCTTCACCAGAGGAATCTGCTGCGGGGC
JMSF007A05+           CGACTCCTCAATTTCATCACTGATCTTCTTCGCCTTCACCAGAGGAATCTGCTGCGGGGC
rJMSF007A05-          CGACTCCTCAATTTCATCACTGATCTTCTTCGCCTTCACCAGAGGAATCTGCTGCGGGGC
                      ____________________________________________________________
consensus             CGACTCCTCAATTTCATCACTGATCTTCTTCGCCTTCACCAGAGGAATCTGCTGCGGGGC
 
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JMFN013H09+           GTTGTCTTTGGTAATCGTCTGCTGTCGAGGGAAGAAGAAATCCGTTGGGAAGAAGTTGTA
JMSF007A05+           GTTGTCTTTGGTAATCGTCTGCTGTCGAGGGAAGAAGAAATCCGTTGGGAAGAAGTTGTA
rJMSF007A05-          GTTGTCTTTGGTAATCGTCTGCTGTCGAGGGAAGAAGAAATCCGTTGGGAAGAAGTTGTA
                      ____________________________________________________________
consensus             GTTGTCTTTGGTAATCGTCTGCTGTCGAGGGAAGAAGAAATCCGTTGGGAAGAAGTTGTA
 
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JMFN013H09+           TTGCAGACCTGCCATTAAAATTTCAGTTGCGA                            
JMSF007A05+           TTGCAGACCTGCCATTAAAATTTCAGTTGCGATGAATTTATTTCTTCTCAACTTTTCAAC
rJMSF007A05-          TTGCAGACCTGCCATTAAAATTTCAGTTGCGATGAATTTATTTCTTCTCAACTTTTCAAC
                      ____________________________________________________________
consensus             TTGCAGACCTGCCATTAAAATTTCAGTTGCGATGAATTTATTTCTTCTCAACTTTTCAAC