Contig 005598:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003B19Sequence328006354 (4)ref|XP_009631176.1|5e-22PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial795005598 (3)ref|XP_009778230.1|3e-75PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial
JMSF020F12Sequence681006354 (4)ref|XP_009631176.1|4e-119PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial764005598 (3)ref|XP_009778230.1|1e-93PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial
JMSF042E09Sequence802006354 (4)ref|XP_009631176.1|4e-140PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial819005598 (3)ref|XP_009778230.1|4e-67PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF020F12+ ATAAGCAGTTAACTGTGTA
rJMSF042E09+ TCGACGTGCATTCTTGAATAAGCAGTTAACTGTGTA
                      ____________________________________________________________
consensus TCGACGTGCATTCTTGAATAAGCAGTTAACTGTGTA
 
. : . : . : . : . : . :
rJMSF020F12+ CCATGTTGCATTTCATGCTTGTGCGGATCTGAAAAATGTGGAGGCTATTGATACACTTCA
rJMSF042E09+ CCATGTTGCATTTCATGCTTGTGCGGATCTGAAAAATGTGGAGGCTATTGATACACTTCA
rJMSF003B19+ TATTGATACACTTCA
                      ____________________________________________________________
consensus CCATGTTGCATTTCATGCTTGTGCGGATCTGAAAAATGTGGAGGCTATTGATACACTTCA
 
. : . : . : . : . : . :
rJMSF020F12+ TCAGATGCTTGAAAAGGATGGTAAAACACCTGATGTGTTCATCCTGATGCAACTCATGAG
rJMSF042E09+ TCAGATGCTTGAAAAGGATGGTAAAACACCTGATGTGTTCATCCTGATGCAGCTCATGAG
rJMSF003B19+ TCAGATGCCTGAAAAGGATGGTAAANCACCTGATGTGTTCATCCTGATGCAACTCATGAG
                      ____________________________________________________________
consensus TCAGATGCTTGAAAAGGATGGTAAAACACCTGATGTGTTCATCCTGATGCAACTCATGAG
 
. : . : . : . : . : . :
rJMSF020F12+ GTGCTATCTACATACAGGGGACTTAGATCGTGGTCTTAAAGTTTTTGAGGACTACATGAA
rJMSF042E09+ GTGCTATCTACATACAGGGGACTTAGATCGTGGTCTTAAAGTTTTTGAGGACTACATGAA
rJMSF003B19+ GTGCTATCTACATACAGGGGACTTAGATCGTGGTCTTAAAGTTTTTGAGGACTACATGAA
                      ____________________________________________________________
consensus GTGCTATCTACATACAGGGGACTTAGATCGTGGTCTTAAAGTTTTTGAGGACTACATGAA
 
. : . : . : . : . : . :
rJMSF020F12+ CTCTGAAAGACCACCCATTATAGAGCTTTATGTGACTCTGATAGAAGGAGCAATGGTTGG
rJMSF042E09+ CTCTGAAAGACCACCCATTATAGAGCTTTATGTGACTCTGATAGAAGGAGCAATGGTTGG
rJMSF003B19+ CTCTGAAAGACCACCCATTATAGAGCTTTATGTGACTCTGATAGAAGGAGCAATGGTTGG
                      ____________________________________________________________
consensus CTCTGAAAGACCACCCATTATAGAGCTTTATGTGACTCTGATAGAAGGAGCAATGGTTGG
 
. : . : . : . : . : . :
rJMSF020F12+ GTATACTACCAGAGGAATGCAAATTGCTCAGGACACGCTGTTAGCAATGAATCAAAGGAA
rJMSF042E09+ GTATACTACCAGAGGAATGCAAATTGCTCAGGACACGCTGTTAGCAATGAATCAAAGGAA
rJMSF003B19+ GTATACTACCAGAGGAATGCAAATTGCTCAGGACACGCTGTTAGCAATGAATCAAAGGAA
                      ____________________________________________________________
consensus GTATACTACCAGAGGAATGCAAATTGCTCAGGACACGCTGTTAGCAATGAATCAAAGGAA
 
. : . : . : . : . : . :
rJMSF020F12+ TTTTACCCTGAGCCCAAAGATGGGAACTGATCTCCTCCTTGCAGCTGCTGGTGAAAAGAG
rJMSF042E09+ TTTTACCCTGAGCCCAAAGATGGGAACTGATCTCCTCCTTGCAGCTGCTGGTGAAAAGAG
rJMSF003B19+ TTTTACCCTGAGCCCAAAGATGGGAACTGATCTCCTCCTTGCAGCTGCTGGTGAAAAGAG
                      ____________________________________________________________
consensus TTTTACCCTGAGCCCAAAGATGGGAACTGATCTCCTCCTTGCAGCTGCTGGTGAAAAGAG
 
. : . : . : . : . : . :
rJMSF020F12+ TGGCGGATATACAGTTGCCAATTTACTTTGGGACTTGATGGTGGGGCGCAATGTTAATAT
rJMSF042E09+ TGGC-GATATACAGTTGCCAATTTACTTTGGGACTTGATGGTGGGGCGCAATGTTAATAT
rJMSF003B19+ TGGCGGATATACAGTTGCCAATTTACTTTGGGACTTGATGGTGGGGCGCAATGTTAATAT
                      ____________________________________________________________
consensus TGGCGGATATACAGTTGCCAATTTACTTTGGGACTTGATGGTGGGGCGCAATGTTAATAT
 
. : . : . : . : . : . :
rJMSF020F12+ CTCACTTCATGCTGTTGAGGCATATTACCAAGGGCTGAAGGACCGAGAGGTACCAGCAGA
rJMSF042E09+ CTCACTTCATGCTGTTGAGGCATATTACCAAGGGCTGAAGGACCGAGAGGTACCAGCAGA
rJMSF003B19+ CTCACTTCATGCTGTTGAGGCATATTACCAAGGGCTGAAGGACCGAGAGGTACCAGCAGA
                      ____________________________________________________________
consensus CTCACTTCATGCTGTTGAGGCATATTACCAAGGGCTGAAGGACCGAGAGGTACCAGCAGA
 
. : . : . : . : . : . :
rJMSF020F12+ TGATCCACGGCGGATGCTTGTAGAGAAAACATATAATGATCTGAAAAGAAGGTTTGGAAG
rJMSF042E09+ TGATCCACGGCGGATGCTTGTAGAGAAAACATATAATGATCTGAAAAGAAGGTTTGGAAG
rJMSF003B19+ TGATCCACGGCGGATGCTTGTAGAGAAAACATATAATGATCTGAAAAGAAGGTTTGGAAG
                      ____________________________________________________________
consensus TGATCCACGGCGGATGCTTGTAGAGAAAACATATAATGATCTGAAAAGAAGGTTTGGAAG
 
. : . : . : . : . : . :
rJMSF020F12+ AAGAACTTACTAGGTAGGAGAGAAGGTGAACTCAAGGAACAGTTGGTCCACTTTTTACCT
rJMSF042E09+ AAGAACTTACTAGGTAGGAGAGAAGGTGAACTCAAGGAACAGTTGGTCCACTTTTTACCT
rJMSF003B19+ AAGAACTTACTAGGTAGGAGAGAAGGTGAACTCAAGGAACAGTTGGTCCACTTTTTACCT
                      ____________________________________________________________
consensus AAGAACTTACTAGGTAGGAGAGAAGGTGAACTCAAGGAACAGTTGGTCCACTTTTTACCT
 
. : . : . : . : . : . :
rJMSF020F12+ TTATTCTGCTATCATTTGTTTCCTCTTTTTGAACTTGACAAGGCAAGTGCTGTCACTCTA
rJMSF042E09+ TTATTCTGCTATCATTTGTTTCCTCTTTTTGAACTTGACAAGGCAAGTGCTGTCACTCTA
rJMSF003B19+ TTATTCTGCTATCATTTGTTTCCTCTTTTTGAACTTGACAAGGCAAGTGCTGTCACTCTA
                      ____________________________________________________________
consensus TTATTCTGCTATCATTTGTTTCCTCTTTTTGAACTTGACAAGGCAAGTGCTGTCACTCTA
 
. : . : . : . : . : . :
rJMSF020F12+ GGTGATAGATTGATTTTATGGTTCATACAAGGAAACAACTTTACTTAGGAACACTCCTTT
rJMSF042E09+ GGTGATAGATTGATTTTATGGTTCATACAAGGAAACAACTTTACTTAGGAACACTCCTTT
rJMSF003B19+ GGTGATAGATTGATTTTATGGTTCATACAAGGAAACAACTTTACTTAGGAACACTCCTTT
                      ____________________________________________________________
consensus GGTGATAGATTGATTTTATGGTTCATACAAGGAAACAACTTTACTTAGGAACACTCCTTT
 
. : . : . : . : . : . :
rJMSF020F12+ TATGGTTCTTTAGAATGAATGTCAT
rJMSF042E09+ TATGGTTCTTTAGAATGAATGTCATTATAATTTTATCATGAATTTCACAGCCTAGC
rJMSF003B19+ TATGGTTCTTTAGAATGAATGTCATTATAATTTTATCATGAATTTCACAGCCTAGCTGAA
                      ____________________________________________________________
consensus TATGGTTCTTTAGAATGAATGTCATTATAATTTTATCATGAATTTCACAGCCTAGCTGAA
 
. : . : . : . : . : . :
rJMSF003B19+ AATTGATTTTCCTGGAACTGAACATCAGGATTGTGTCCCATTTGTATGTAGATTTTCAGT
                      ____________________________________________________________
consensus AATTGATTTTCCTGGAACTGAACATCAGGATTGTGTCCCATTTGTATGTAGATTTTCAGT