| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF027P23 | Sequence | 561 | 004674 (3) | emb|CAC19789.1| | 1e-18 | MYB-like DNA-binding protein [Catharanthus roseus] | 751 | 005565 (3) | dbj|BAF38405.1| | 2e-71 | telomere binding protein [Nicotiana tabacum] |
| JMFF050I07 | Sequence | 617 | 004674 (3) | emb|CAC19789.1| | 9e-20 | MYB-like DNA-binding protein [Catharanthus roseus] | 608 | 005565 (3) | ref|XP_009785792.1| | 6e-52 | PREDICTED: telomere repeat-binding protein 3-like isoform X1 [Nicotiana sylvest |
| JMSF037J03 | Sequence | 683 | 004674 (3) | emb|CAC19789.1| | 6e-21 | MYB-like DNA-binding protein [Catharanthus roseus] | 728 | 005565 (3) | dbj|BAF38405.1| | 7e-72 | telomere binding protein [Nicotiana tabacum] |
This contig is upended
. : . : . : . : . : . :
rJMSF037J03+ GGTACCGTTTCGGAGAATCCTACTGATTCCTCGACTAATTTAT
rJMFF027P23+ GTGAGTTGGTACCGTTTCGGAGAATCCTACTGATTCCTCGACTAATTTAT
____________________________________________________________
consensus GTGAGTTGGTACCGTTTCGGAGAATCCTACTGATTCCTCGACTAATTTAT
. : . : . : . : . : . :
rJMSF037J03+ GTGATTCAGACACCAAAGCTTTGGTGGCGGTTCCACCATCAAATGCCGAGGCACTTGCAA
rJMFF027P23+ GTGATTCAGACACCAAAGCTTTGGTGGCGGTTCCACCATCAAATGCCGAGGCACTTGCAA
____________________________________________________________
consensus GTGATTCAGACACCAAAGCTTTGGTGGCGGTTCCACCATCAAATGCCGAGGCACTTGCAA
. : . : . : . : . : . :
rJMSF037J03+ TTGTTCCTCTGAATGGGAAAAGTAAGCGCACTGAACTTTCGCAACGTAGGACCCGAAGAC
rJMFF027P23+ TTGTTCCTCTGAATGGGAAAAGTAAGCGCACTGAACTTTCGCAACGTAGGACCCGAAGAC
rJMFF050I07+ CCGAAGAC
____________________________________________________________
consensus TTGTTCCTCTGAATGGGAAAAGTAAGCGCACTGAACTTTCGCAACGTAGGACCCGAAGAC
. : . : . : . : . : . :
rJMSF037J03+ CGTTTTCTGTTGCAGAAGTTGATGGACTGGTTGGAGCAGTAGAGCAACTCGGAACTGGAA
rJMFF027P23+ CGTTTTCTGTTGCAGAAGTTGATGGACTGGTTGGAGCAGTAGAGCAACTCGGAACTGGAA
rJMFF050I07+ CGTTTTCTGTTGCAGAAGTTGATGGACTGGTTGGAGCAGTAGAGCAACTCGGAACTGGAA
____________________________________________________________
consensus CGTTTTCTGTTGCAGAAGTTGATGGACTGGTTGGAGCAGTAGAGCAACTCGGAACTGGAA
. : . : . : . : . : . :
rJMSF037J03+ GGTGGCGTGATGTTAAAATGCGTGCTTTTGAGAATGCAGATCATCGCACATACGTTGACT
rJMFF027P23+ GGTGGCGTGATGTTAAAATGCGTGCTTTTGAGAATGCAGATCATCGCACATACGTTGACT
rJMFF050I07+ GGTGGCGTGATGTTAAAATGCGTGCTTTTGAGAATGCAGATCATCGCACATACGTTGACT
____________________________________________________________
consensus GGTGGCGTGATGTTAAAATGCGTGCTTTTGAGAATGCAGATCATCGCACATACGTTGACT
. : . : . : . : . : . :
rJMSF037J03+ TGAAGGATAAATGGAAGACGTTGGTTCATACTGCGAGCATCGCCCCGCAGCAAAGGCGGG
rJMFF027P23+ TGAAGGATAAATGGAAGACGTTGGTTCATACTGCGAGCATCGCCCCGCAGCAAAGGCGGG
rJMFF050I07+ TGAAGGATAAATGGAAGACGTTGGTTCATACTGCGAGCATCGCCCCGCAGCAAAGGCGGG
____________________________________________________________
consensus TGAAGGATAAATGGAAGACGTTGGTTCATACTGCGAGCATCGCCCCGCAGCAAAGGCGGG
. : . : . : . : . : . :
rJMSF037J03+ GAGAGCCTGTACCGCAGGAGCTTCTGAACCGGGTCTTAGCTGCCCACTCGTACTGGTCCC
rJMFF027P23+ GAGAGCCTGTACCGCAGGAGCTTCTGAACCGGGTCTTAGCTGCCCACTCGTACTGGTCCC
rJMFF050I07+ GAGAGCCTGTACCGCAGGAGCTTCTGAACCGGGTCTTAGCTGCCCACTCGTACTGGTCCC
____________________________________________________________
consensus GAGAGCCTGTACCGCAGGAGCTTCTGAACCGGGTCTTAGCTGCCCACTCGTACTGGTCCC
. : . : . : . : . : . :
rJMSF037J03+ AACATCAGGCCAAGCAACACGGGAAGAGCCACGCTACTTTGCCTTTGAGGACCGAGGTTT
rJMFF027P23+ AACATCAGGCCAAGCAACACGGGAAGAGCCACGCTACTTTGCCTTTGAGGACCGAGGTTT
rJMFF050I07+ AACATCAGGCCAAGCAACACGGGAAGAGCCACGCTACTTTGCCTTTGAGGACCGAGGTTT
____________________________________________________________
consensus AACATCAGGCCAAGCAACACGGGAAGAGCCACGCTACTTTGCCTTTGAGGACCGAGGTTT
. : . : . : . : . : . :
rJMSF037J03+ GAAAAGGTTGTCTCGTGATTATATTCCTAAGATGTGTATATGACGTAAGAATGTAGAGAT
rJMFF027P23+ GAAAAGGTTGTCTCGTGATTATATTCCTAAGATGTGTATATGACGTAAGAATGTAGAGAT
rJMFF050I07+ GAAAAGGTTGTCTCGTGATTATATTCCTAAGATGTGTATATGACGTAAGAATGTAGAGAT
____________________________________________________________
consensus GAAAAGGTTGTCTCGTGATTATATTCCTAAGATGTGTATATGACGTAAGAATGTAGAGAT
. : . : . : . : . : . :
rJMSF037J03+ TGAAGGGTCACATATTATATATATGTCGTCGTTTAGGTTTCTCAGGCAGGCTCACTGATT
rJMFF027P23+ TGAAGGGTCACATATTATATATATGTCGTCGTTTAGGTTTCTCAGGCAGGCTCACTGATT
rJMFF050I07+ TGAAGGGTCACATATTATATATATGTCGTCGTTTAGGTTTCTCAGGCAGGCTCACTGATT
____________________________________________________________
consensus TGAAGGGTCACATATTATATATATGTCGTCGTTTAGGTTTCTCAGGCAGGCTCACTGATT
. : . : . : . : . : . :
rJMSF037J03+ CATCGCGCAGTCTTCCTCCATGATTCGGGGAGGCTGGCGACTGTAAATTGATTCAAGAAA
rJMFF027P23+ CATCGCGCAGTCTTCCTCCATGATTCGGGGAGGCTGGCGACTGTAAATTGATTCAAGAAA
rJMFF050I07+ CATCGCGCAGTCTTCCTCCATGATTCGGGGAGGCTGGCGACTGTAAATTGATTCAAGAAA
____________________________________________________________
consensus CATCGCGCAGTCTTCCTCCATGATTCGGGGAGGCTGGCGACTGTAAATTGATTCAAGAAA
. : . : . : . : . : . :
rJMSF037J03+ CATTGTAGTCTA-GGTGTCACTCTCTGTTGATTCTATTTTTTATTTTTCTGGGATTGGAA
rJMFF027P23+ CATTGTAGTCTAGGGTGTCACTCTCTGTTGATTCTATTTTTTATTTTTCTGGGATTGGAA
rJMFF050I07+ CATTGTAGTCTAGGGTGTCACTCTCTGTTGATTCTATTTTTTATTTTTCTGGGATTGGAA
____________________________________________________________
consensus CATTGTAGTCTAGGGTGTCACTCTCTGTTGATTCTATTTTTTATTTTTCTGGGATTGGAA
. : . : . : . : . : . :
rJMSF037J03+ ATGTATTATTATGTACATTAATCTCT
rJMFF027P23+ ATGTATTATTATGTACATTAATCTCTTTACATT
rJMFF050I07+ ATGTATTATTATGTACATTAATCTCTTTACATTTGAAATAAATGGTTTATTTCATTCCTG
____________________________________________________________
consensus ATGTATTATTATGTACATTAATCTCTTTACATTTGAAATAAATGGTTTATTTCATTCCTG