Contig 005564:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF009D04Sequence554006762 (11)ref|XP_006349497.1|8e-42PREDICTED: ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like isofor742005564 (6)emb|CDP06599.1|7e-92unnamed protein product [Coffea canephora]
JMFF034P23Sequence288006762 (11)ref|XP_006341014.1|7e-23PREDICTED: ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like [Solan654005564 (6)emb|CDP06599.1|1e-74unnamed protein product [Coffea canephora]
JMFF050H15Sequence636006762 (11)ref|XP_006349497.1|1e-52PREDICTED: ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like isofor626005564 (6)ref|XP_007026989.1|1e-65Cell division protease ftsH isoform 1 [Theobroma cacao] gb|EOY07491.1| Cell divi
JMFS069A07Sequence618005564 (6)gb|AFX67028.1|2e-133putative AAA-metalloprotease FtsH, partial [Solanum tuberosum]
JMSF032D11Sequence684006762 (11)ref|XP_006349497.1|3e-65PREDICTED: ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like isofor834005564 (6)emb|CDP06599.1|4e-131unnamed protein product [Coffea canephora]
JMSF053G09Sequence671006762 (11)ref|XP_006349497.1|6e-62PREDICTED: ATP-dependent zinc metalloprotease FTSH 8, mitochondrial-like isofor902005564 (6)ref|XP_007026989.1|9e-153Cell division protease ftsH isoform 1 [Theobroma cacao] gb|EOY07491.1| Cell divi

Alignment

This contig is upended


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rJMSF053G09+                                        ACCCTGATAACTATGGACCATTTTTGAGTC
                      ____________________________________________________________
consensus                                           ACCCTGATAACTATGGACCATTTTTGAGTC
 
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rJMSF053G09+          AGCAATAGATAGGGTAATTGGTGGTCTTGAGAAGAAGAACAAGGTCATAAGCAAGCTGGA
                      ____________________________________________________________
consensus             AGCAATAGATAGGGTAATTGGTGGTCTTGAGAAGAAGAACAAGGTCATAAGCAAGCTGGA
 
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rJMSF032D11+          AAGGAGAACAGNTGCTTACCATGNATCTGGCCATGCAGTTGCTGGTTNGTTCTTGGAACA
JMFS069A07-           AAGGAGAACAGTTGCTTACCATGAATCTGGCCATGCAGTTGCTGGTTGGTTCTTGGAACA
rJMSF053G09+          AAGGAGAACAGTTGCTTACCATGAATCTGGCCATGCAGTTGCTGGTTGGTTCTTGGAACA
                      ____________________________________________________________
consensus             AAGGAGAACAGTTGCTTACCATGAATCTGGCCATGCAGTTGCTGGTTGGTTCTTGGAACA
 
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rJMSF032D11+          TGCAGAACCATTGCTCAAAGTGACAATTGTTCCACGTGGTACTGCAGCCCTTGGGTTTGC
JMFS069A07-           TGCAGAACCATTGCTCAAAGTGACAATTGTTCCACGTGGTACTGCAGCCCTTGGGTTTGC
rJMSF053G09+          TGCAGAACCATTGCTCAAAGTGACAATTGTTCCACGTGGTACTGCAGCCCTTGGGTTTGC
rJMFF009D04+                                                                  TTGC
                      ____________________________________________________________
consensus             TGCAGAACCATTGCTCAAAGTGACAATTGTTCCACGTGGTACTGCAGCCCTTGGGTTTGC
 
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rJMSF032D11+          TCAATATGTTCCTAATGAAAATCTTTTGATGACAAAAGAACAACTCTTTGATATGACATG
rJMFF034P23+                                       TGACAAAAGAACAACTCTTTGATATGACATG
JMFS069A07-           TCAATATGTTCCTAATGAAAATCTTTTGATGACAAAAGAACAACTCTTTGATATGACATG
rJMSF053G09+          TCAATATGTTCCTAATGAAAATCTTTTGATGACAAAAGAACAACTCTTTGATATGACATG
rJMFF009D04+          TCAATATGTTCCTAATGAAAATCTTTTGATGACAAAAGAACAACTCTTTG--ATGACATG
                      ____________________________________________________________
consensus             TCAATATGTTCCTAATGAAAATCTTTTGATGACAAAAGAACAACTCTTTGATATGACATG
 
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rJMSF032D11+          CATGACACTTGGTGGTCGAGCATCTGAGCAGGTTATGCTGGGGAAGATATCTACAGGAGC
rJMFF034P23+          CATGACACTTGGTGGTCGAGCATCTGAGCAGGTTATGCTGGGGAAGATATCTACAGGAGC
JMFS069A07-           CATGACACTTGGTGGTCGAGCATCTGAGCAGGTTATGCTGGGGAAGATATCTACAGGAGC
rJMSF053G09+          CATGACACTTGGTGGTCGAGCATCTGAGCAGGTTATGCTGGGGAAGATATCTACAGGAGC
rJMFF009D04+          CATGACACTTGGTGGTCGAGCATCTGAGCAGGTTATGCTGGGGAAGATATCTACAGGAGC
                      ____________________________________________________________
consensus             CATGACACTTGGTGGTCGAGCATCTGAGCAGGTTATGCTGGGGAAGATATCTACAGGAGC
 
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rJMSF032D11+          ACAGAATGATTTGGAGAAAGTCACCAAGA-TGACATATGCCCAAGTGGCAGTGTATGGTT
rJMFF034P23+          ACAGAATGATCTGGAGAAAGTCACCAAGANTGACATATGCCCAAGTGGCAGTGTATGGTT
JMFS069A07-           ACAGAATGATTTGGAGAAAGTCACCAAGA-TGACATATGCCCAAGTGGCAGTGTATGGTT
rJMSF053G09+          ACAGAATGATTTGGAGAAAGTCACCAAGA-TGACATATGCCCAAGTGGCAGTGTATGGTT
rJMFF009D04+          ACAGAATGATTTGGAGAAAGTCACCAAGA-TGACATATGCCCAAGTGGCAGTGTATGGTT
rJMFF050H15+                                            ATATGCCCAAGTGGCAGTGTATGGTT
                      ____________________________________________________________
consensus             ACAGAATGATTTGGAGAAAGTCACCAAGA-TGACATATGCCCAAGTGGCAGTGTATGGTT
 
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rJMSF032D11+          TCAGTGACAAGGTTGGTCTGCTTTCCTTCCCTCCAAATGAAAATGCATTTGAGATGAGCA
rJMFF034P23+          TCAGTGACAAGGTTGGTCTGCTTTCCTTCCCTCCAAATGAAAATGCATTTGAGATGAGCA
JMFS069A07-           TCAGTGACAAGGTTGGTCTGCTTTCCTTCCCTCCAAATGAAAATGCATTTGAGATGAGCA
rJMSF053G09+          TCAGTGACAAGGTTGGTCTGCTTTCCTTCCCTCCAAATGAAAATGCATTTGAGATGAGCA
rJMFF009D04+          TCAGTGACAAGGTTGGTCTGCTTTCCTTCCCTCCAAATGAAAATGCATTTGAGATGAGCA
rJMFF050H15+          TCAGTGACAAGGTTGGTCTGCTTTCTTTCCCTCCAAATGAAAATGCATTGNAGATGAGCA
                      ____________________________________________________________
consensus             TCAGTGACAAGGTTGGTCTGCTTTCCTTCCCTCCAAATGAAAATGCATTTGAGATGAGCA
 
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rJMSF032D11+          AGCCTTACAGCAACAAAACTGCTGCCATCATTGACAATGAAGTTAGAGAATGGATTGCAA
rJMFF034P23+          AGCCTTACAGCAACAAAACTGCTGCCATCATTNACAATGAAGTTAGAGAATGGATTGCAA
JMFS069A07-           AGCCTTACAGCAACAAAACTGCTGCCATCATTGACAATGAAGTTAGAGAATGGATTGCAA
rJMSF053G09+          AGCCTTACAGCAACAAAACTGCTGCCATCATTGACAATGAAGTTAGAGAATGGATTGCAA
rJMFF009D04+          AGCCTTACAGCAACAAAACTGCTGCCATCATTGACAATGAAGTTAGAGAATGGATTGCAA
rJMFF050H15+          AGCCTTACAGCAACAAAACTGCTGCCATCATTGACAATGAAGTTAGAGAATGGATTGCAA
                      ____________________________________________________________
consensus             AGCCTTACAGCAACAAAACTGCTGCCATCATTGACAATGAAGTTAGAGAATGGATTGCAA
 
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rJMSF032D11+          AGGCTTATGAATGCACAGTCCAGCTCATAGAGGAGCACAAGGAGCATGTAGCTCAGATTG
rJMFF034P23+          AGGCTTATGAATGCACAGTCCAGCTCATAGAGGAGCACAAGGAGCATGTAGCTCAGATTG
JMFS069A07-           AGGCTTATGAATGCACAGTCCAGCTCATAGAGGAGCACAAGGAGCATGTAGCTCAGATTG
rJMSF053G09+          AGGCTTATGAATGCACAGTCCAGCTCATAGAGGAGCACAAGGAGCATGTAGCTCAGATTG
rJMFF009D04+          AGGCTTATGAATGCACAGTCCAGCTCATAGAGGAGCACAAGGAGCATGTAGCTCAGATTG
rJMFF050H15+          AGGCTTATGAATGCACAGTCCAGCTCATAGAGGAGCACAAGGAGCATGTAGCTCAGATTG
                      ____________________________________________________________
consensus             AGGCTTATGAATGCACAGTCCAGCTCATAGAGGAGCACAAGGAGCATGTAGCTCAGATTG
 
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rJMSF032D11+          CTGAATTGTTACTTGAGAAGGGGGTCTTGCATCAAGAGGATTTGGTTCGGGTACTCGGCG
rJMFF034P23+          CTGAATTGTTACTTGAGAAGGAGGTCTTGCATCAAGAGGATTTGGTTCGGGTACTCGGCG
JMFS069A07-           CTGAATTGTTACTTGAGAAGGAGGTCTTGCATCAAGAGGATTTGGTTCGGGTACTCGGCG
rJMSF053G09+          CTGAATTGTTACTTGAGAAGGAGGTCTTGCATCAAGAGGATTTGGTTCGGGTACTCGGCG
rJMFF009D04+          CTGAATTGTTACTTGAGAAGGAGGTCTTGCATCAAGAGGATTTGGTTCGGGTACTCGGCG
rJMFF050H15+          CTGAATTGTTACTTGAGAAGGAGGTCTTGCATCAAGAGGATTTGGTTCGGGTACTCGGCG
                      ____________________________________________________________
consensus             CTGAATTGTTACTTGAGAAGGAGGTCTTGCATCAAGAGGATTTGGTTCGGGTACTCGGCG
 
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rJMSF032D11+          AACGCCCATTCAAGAGTAGTGAGCCCACAAATTACGATAGGTTCAAGGATGGATTTGTAG
rJMFF034P23+          AACGCCCATTCAAGAGTAGTGAGCCCACAAATTACGATAGGTTCAAGGATGGATTTGTAG
JMFS069A07-           AACGCCCATTCAAGAGTAGTGAGCCCACAAATTACGATAGGTTCAAGGATGGATTTGTA 
rJMSF053G09+          AACGCCCATTCAAGAGTAGTGAGCCCACAAATTACGATAGGTTCAAGGATGGATTTGTAG
rJMFF009D04+          AACGCCCATTCAAGAGTAGTGAGCCCACAAATTACGATAGGTTCAAGGATGGATTTGTAG
rJMFF050H15+          AACGCCCATTCAAGAGTAGTGAGCCCACAAATTACGATAGGTTCAAGGATGGATTTGTAG
                      ____________________________________________________________
consensus             AACGCCCATTCAAGAGTAGTGAGCCCACAAATTACGATAGGTTCAAGGATGGATTTGTAG
 
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rJMSF032D11+          AAGACAAAGAAACTGAAGCTAAAGATACAGCTGAGAATAAGAGTACAAAGGATGATGACT
rJMFF034P23+          AAGACAAAGAAACTGAAGCTAAAGATACAGCTGAGAATAAGAGTACAAAGGATGANGACT
rJMSF053G09+          AAGACAAAGAAACTGAAGCTAAAGATACAGCTGAGAATAAGAGTACAAAGGATGATGACT
rJMFF009D04+          AAGACAAAGAAACTGAAGCTAAAGATACAGCTGAGAATAAGAGTACAAAGGATGATGACT
rJMFF050H15+          AAGACAAAGAAACTGAAGCTAAAGATACAGCTGAGAATAAGAGTACAAAGGATGATGACT
                      ____________________________________________________________
consensus             AAGACAAAGAAACTGAAGCTAAAGATACAGCTGAGAATAAGAGTACAAAGGATGATGACT
 
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rJMSF032D11+          CGTCACCTCTCCAGCCAGAGGTTGTTCCTGTATAGTCTATTGTGACTTGTAAGTGAGATC
rJMFF034P23+          CGTCACCTCTCCAGCCAGAGGTTGTTCCTGTATAGTCTATTGTGACTTGTAAGTGAGATC
rJMSF053G09+          CGTCACCTCTCCAGCCAGAGGTTGTTCCTGTATAGTCTATTGTGACTTGTAAGTGAGATC
rJMFF009D04+          CGTCACCTCTCCAGCCAGAGGTTGTTCCTGTATAGTCTATTGTGACTTGTAAGTGAGATC
rJMFF050H15+          CGTCACCTCTCCAGCCAGAGGTTGTTCCTGTATAGTCTATTGTGACTTGTAAGTGAGATC
                      ____________________________________________________________
consensus             CGTCACCTCTCCAGCCAGAGGTTGTTCCTGTATAGTCTATTGTGACTTGTAAGTGAGATC
 
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rJMSF032D11+          ATTGAGGTATCTTTGATATTTGCCTACTCTGCACTCACTGAAGTTATATAAACTATCAAT
rJMFF034P23+          ATTGAGGTATCTTTGATATTTGCCTACTCTGCACTCACTGAAGTTATATAAACTATCAAT
rJMSF053G09+          ATTGAGGTATCTTTGATATTTGCCTACTCTGCACTCACTGAAGTTATATAAACTATCAAT
rJMFF009D04+          ATTGAGGTATCTTTGATATTTGCCTACTCTGCACTCACTGAAGTTATATAAACTATCAAT
rJMFF050H15+          ATTGAGGTATCTTTGATATTTGCCTACTCTGCACTCACTGAAGTTATATAAACTATCAAT
                      ____________________________________________________________
consensus             ATTGAGGTATCTTTGATATTTGCCTACTCTGCACTCACTGAAGTTATATAAACTATCAAT
 
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rJMSF032D11+          CCAGCT                                                      
rJMFF034P23+          CCAGCTATCAATNACAAGCAAGT                                     
rJMSF053G09+          CCAGCTATCAATGACAAGCAAGTTTGGAGTTTT                           
rJMFF009D04+          CCAGCTATCAATGACAAGCAAGTTTGGAGTTTTTGCATGGTATTATACTATTACTCGTAA
rJMFF050H15+          CCAGCTATCAATGACAAGCAAGTTTGGAGTTTTTGCATGGTATTATACTATTACTCGTAA
                      ____________________________________________________________
consensus             CCAGCTATCAATGACAAGCAAGTTTGGAGTTTTTGCATGGTATTATACTATTACTCGTAA
 
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rJMFF009D04+          CAAATAAAAA                                                  
rJMFF050H15+          CAAATAAAAATGAAAAAACAAATCTATTTGCCTAAAAAAAAAAAAAAAACTCTCCAGGGT
                      ____________________________________________________________
consensus             CAAATAAAAATGAAAAAACAAATCTATTTGCCTAAAAAAAAAAAAAAAACTCTCCAGGGT