Contig 005552:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF019C07Sequence539005552 (13)ref|NP_001274828.1|2e-62uncharacterized protein LOC102577685 [Solanum tuberosum] gb|ABB16971.1| unknown 747005552 (13)ref|XP_009601667.1|1e-75PREDICTED: protein BPS1, chloroplastic-like [Nicotiana tomentosiformis]
JMFF029N13Sequence410005552 (13)ref|NP_001274828.1|8e-24uncharacterized protein LOC102577685 [Solanum tuberosum] gb|ABB16971.1| unknown 750005552 (13)ref|XP_009601667.1|4e-76PREDICTED: protein BPS1, chloroplastic-like [Nicotiana tomentosiformis]
JMFF039B21Sequence642005552 (13)dbj|BAF46312.1|2e-53hypothetical protein [Ipomoea nil]
JMFF039E10Sequence589005552 (13)ref|NP_001274828.1|1e-60uncharacterized protein LOC102577685 [Solanum tuberosum] gb|ABB16971.1| unknown 738005552 (13)ref|XP_009601667.1|4e-73PREDICTED: protein BPS1, chloroplastic-like [Nicotiana tomentosiformis]
JMFF042F20Sequence647012912 (2)ref|XP_010322440.1|112PREDICTED: uncharacterized protein LOC101253793 [Solanum lycopersicum]624005552 (13)ref|XP_011093116.1|1e-45PREDICTED: protein BPS1, chloroplastic-like [Sesamum indicum] ref|XP_011093118.1
JMFF048N20Sequence456005552 (13)ref|NP_001274828.1|7e-48uncharacterized protein LOC102577685 [Solanum tuberosum] gb|ABB16971.1| unknown 270005552 (13)
JMFS094H02Sequence630005552 (13)ref|NP_001274828.1|3e-83uncharacterized protein LOC102577685 [Solanum tuberosum] gb|ABB16971.1| unknown
JMSF033C04Sequence679005552 (13)ref|NP_001274828.1|3e-69uncharacterized protein LOC102577685 [Solanum tuberosum] gb|ABB16971.1| unknown 730005552 (13)ref|XP_009601667.1|2e-74PREDICTED: protein BPS1, chloroplastic-like [Nicotiana tomentosiformis]

Alignment

This contig is upended


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JMFF048N20-                                                                    GTG
JMFF019C07-                                                                  TCGTG
                      ____________________________________________________________
consensus                                                                    TCGTG
 
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JMFF029N13-                                                   TCCTTGCGATCGCTAAGAAT
JMFF039E10-                                                   TCCTTGCGATCGCTAAGAAT
JMFF048N20-           CAACCTTCTTCCCCGCTTTCCGCCTCTCTCTACACCCCAGTCCTTGCGATCGCTAAGAAT
JMFF019C07-           CAACCTTCTTCCCCGCTTTCCGCCTCTCTCTACACCCCAGTCCTTGCGATCGCTAAGAAT
JMSF033C04-                                                   TCCTTGCGATCGCTAAGAAT
JMFS094H02-                                                          GATCGCTAAGAAT
                      ____________________________________________________________
consensus             CAACCTTCTTCCCCGCTTTCCGCCTCTCTCTACACCCCAGTCCTTGCGATCGCTAAGAAT
 
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JMFF029N13-           CGGCGGCGTTGACTCTATCAATCAGTTCCCGTTTCAAGATCTAACTATCCGTTTCGTTAT
JMFF039E10-           CGGCGGCGTTGACTCTATCAATCAGTTCCCGTTTCAAGATCTAACTATCCGTTTCGTTAT
JMFF048N20-           CGGCGGCGTTGACTCTATCAATCAGTTCCCGTTTCAAGATCTAACTATCCGTTTCGTTAT
JMFF019C07-           CGGCGGCGTTGACTCTATCAATCAGTTCCCGTTTCAAGATCTAACTATCCGTTTCGTTAT
JMSF033C04-           CGGCGGCGTTGACTCTATCAATCAGTTCCCGTTTCAAGATCTAACTATCCGTTTCGTTAT
JMFS094H02-           CGGCGGCGTTGACTCTATCAATCAGTTCCCGTTTCAAGATCTAACTATCCGTTTCGTTAT
                      ____________________________________________________________
consensus             CGGCGGCGTTGACTCTATCAATCAGTTCCCGTTTCAAGATCTAACTATCCGTTTCGTTAT
 
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JMFF029N13-           ATTATAAAATGAGTCGTCCACAAGATCCTCAACGTCCCTATTTACCATTTAAGAATCCCT
JMFF039E10-           ATTATAAAATGAGTCGTCCACAAGATCCTCAACGTCCCTATTTACCATTTAAGAATCCCT
JMFF048N20-           ATTATAAAATGAGTCGTCCACAAGATCCTCAACGTCCCTATTTACCATTTAAGAATCCCT
JMFF019C07-           ATTATAAAATGAGTCGTCCACAAGATCCTCAACGTCCCTATTTACCATTTAAGAATCCCT
JMSF033C04-           ATTATAAAATGAGTCGTCCACAAGATCCTCAACGTCCCTATTTACCATTTAAGAATCCCT
JMFS094H02-           ATTATAAAATGAGTCGTCCACAAGATCCTCAACGTCCCTATTTACCATTTAAGAATCCCT
                      ____________________________________________________________
consensus             ATTATAAAATGAGTCGTCCACAAGATCCTCAACGTCCCTATTTACCATTTAAGAATCCCT
 
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JMFF029N13-           TTTCGATGATATTACCTAAGGGCTCACACCTGTCTCCGAGGCTTCTTGCTCTGTTGAATG
JMFF039E10-           TTTCGATGATATTACCTAAGGGCTCACACCTGTCTCCGAGGCTTCTTGCTCTGTTGAATG
JMFF048N20-           TTTCGATGATATTACCTAAGGGCTCACACCTGTCTCCGAGGCTTCTTGCTCTGTTGAATG
JMFF019C07-           TTTCGATGATATTACCTAAGGGCTCACACCTGTCTCCGAGGCTTCTTGCTCTGTTGAATG
JMSF033C04-           TTTCGATGATATTACCTAAGGGCTCACACCTGTCTCCGAGGCTTCTTGCTCTGTTGAATG
JMFS094H02-           TTTCGATGATATTACCTAAGGGCTCACACCTGTCTCCGAGGCTTCTTGCTCTGTTGAATG
                      ____________________________________________________________
consensus             TTTCGATGATATTACCTAAGGGCTCACACCTGTCTCCGAGGCTTCTTGCTCTGTTGAATG
 
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JMFF029N13-           CTTTCGAGGAATCATTGGCAGAGAAACTCAGAAGTCTGATGCACAGAGGCAGGGGAAATG
JMFF039E10-           CTTTCGAGGAATCATTGGCAGAGAAACTCAGAAGTCTGATGCACAGAGGCAGGGGAAATG
JMFF048N20-           CTTTCGAGGAATCATTGGCAGAGAAACTCAGAAGTCTGATGCACAGAGGCAGGGGAAATG
JMFF019C07-           CTTTCGAGGAATCATTGGCAGAGAAACTCAGAAGTCTGATGCACAGAGGCAGGGGAAATG
JMSF033C04-           CTTTCGAGGAATCATTGGCAGAGAAACTCAGAAGTCTGATGCACAGAGGCAGGGGAAATG
JMFS094H02-           CTTTCGAGGAATCATTGGCAGAGAAACTCAGAAGTCTGATGCACAGAGGCAGGGGAAATG
                      ____________________________________________________________
consensus             CTTTCGAGGAATCATTGGCAGAGAAACTCAGAAGTCTGATGCACAGAGGCAGGGGAAATG
 
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JMFF029N13-           CCCTAAGTGTATCGTGGATGAAAGAAGCAATGGCTTCACTCTCTACAATC          
JMFF039E10-           CCCTAAGTGTATCGTGGATGAAAGAAGCAATGGCTTCACTCTCTACAATCCATACAGATA
JMFF048N20-           CCCTAAGTGTATCGTGGATGAAAGAAGCAATGGCTTCACTCTCTACAATCCATACAGATA
JMFF019C07-           CCCTAAGTGTATCGTGGATGAAAGAAGCAATGGCTTCACTCTCTACAATCCATACAGATA
JMSF033C04-           CCCTAAGTGTATCGTGGATGAAAGAAGCAATGGCTTCACTCTCTACAATCCATACAGATA
JMFS094H02-           CCCTAAGTGTATCGTGGATGAAAGAAGCAATGGCTTCACTCTCTACAATCCATACAGATA
                      ____________________________________________________________
consensus             CCCTAAGTGTATCGTGGATGAAAGAAGCAATGGCTTCACTCTCTACAATCCATACAGATA
 
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JMFF039E10-           TTAAAATACTTGTAACTGAACTTGAACTTCCTGTATGTGACTGGGACGATAAGTGGATAG
JMFF048N20-           TTAAAATACTTGTAACTGAACTTGAACTTCCTGTATGTGACTGGGACGATAAGTGGATAG
JMFF019C07-           TTAAAATACTTGTAACTGAACTTGAACTTCCTGTATGTGACTGGGACGATAAGTGGATAG
JMSF033C04-           TTAAAATACTTGTAACTGAACTTGAACTTCCTGTATGTGACTGGGACGATAAGTGGATAG
JMFS094H02-           TTAAAATACTTGTAACTGAACTTGAACTTCCTGTATGTGACTGGGACGATAAGTGGATAG
                      ____________________________________________________________
consensus             TTAAAATACTTGTAACTGAACTTGAACTTCCTGTATGTGACTGGGACGATAAGTGGATAG
 
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JMFF039E10-           ATGTTTACATGGACAATAGTGTGAGCTTGCTGGATATTTGCACTGCTTTCAGCTCTGAGA
JMFF048N20-           ATGTTTACATGGACAATAGTGTGAGCTTGCTGG                           
JMFF019C07-           ATGTTTACATGGACAATAGTGTGAGCTTGCTGGATATTTGCACTGCTTTCAGCTCTGAGA
JMSF033C04-           ATGTTTACATGGACAATAGTGTGAGCTTGCTGGATATTTGCACTGCTTTCAGCTCTGAGA
JMFS094H02-           ATGTTTACATGGACAATAGTGTGAGCTTGCTGGATATTTGCACTGCTTTCAGCTCTGAGA
                      ____________________________________________________________
consensus             ATGTTTACATGGACAATAGTGTGAGCTTGCTGGATATTTGCACTGCTTTCAGCTCTGAGA
 
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JMFF039E10-           TCTTGAGGCTTAACCAAGCCAACCTTTACCTTCGGTGCACTGTGCGTAA           
JMFF019C07-           TCTTGAGGCTTAACCAAGCCAACCTTTACCTTCGGTGCACTGTGCGTAA           
JMSF033C04-           TCTTGAGGCTTAACCAAGCCAACCTTTACCTTCGGTGCACTGTGCGTAACCTAGATGGTG
JMFS094H02-           TCTTGAGGCTTAACCAAGCCAACCTTTACCTTCGGTGCACTGTGCGTAACCTAGATGGTG
rJMSF033C04+                                                             TAGATNGTG
rJMFF019C07+                                                             TAGATGGTG
rJMFF029N13+                                                             TAGATGGTG
                      ____________________________________________________________
consensus             TCTTGAGGCTTAACCAAGCCAACCTTTACCTTCGGTGCACTGTGCGTAACCTAGATGGTG
 
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JMSF033C04-           AACCAAAGCAGTTTGTACGAGCCCGTTCATCATTGGATGG                    
JMFS094H02-           AACCAAAGCAGTTTGTACGAGCCCGTTCATCATTGGATGGATGGAGGCAGCGTGTGAATT
rJMSF033C04+          AACCNAAGCAGTTTGTACGAGCCCGTTCATCATTGGATGGATGGAGGCAGCGTGTGAATT
rJMFF019C07+          AACCAAAGCAGTTTGTACGAGCCCGTTCATCATTGGATGGATGGAGGCAGCGTGTGAATT
rJMFF029N13+          AACCAAAGCAGTTTGTACGAGCCCGTTCATCATTGGATGGATGGAGGCAGCGTGTGAATT
rJMFF039E10+             CAAAGCAGTTNGTACGAGCCCGTTCATCATTGGATGGATGGAGGCAGCGTGTGAATT
                      ____________________________________________________________
consensus             AACCAAAGCAGTTTGTACGAGCCCGTTCATCATTGGATGGATGGAGGCAGCGTGTGAATT
 
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JMFS094H02-           CCAAAAACCCACGACTCGAGAATAGCTTTGCGATC                         
rJMSF033C04+          CCAAAAACCCACGACTCGAGAATAGCTTTGCGATCTTGGACCGCCTCACTGAAAGCCTGA
rJMFF019C07+          CCAAAAACCCACGACTCGAGAATAGCTTTGCGATCTTGGACCGCCTCACTGAAAGCCTGA
rJMFF029N13+          CCAAAAACCCACGACTCGAGAATAGCTTTGCGATCTTGGACCGCCTCACTGAAAGCCTGA
rJMFF039E10+          CCAAAAACCCACGACTCGAGAATAGCTTTGCGATCTTGGACCGCCTCACTGAAAGCCTGA
rJMFF039B21+                                                         ACTGAAAGCNTGA
                      ____________________________________________________________
consensus             CCAAAAACCCACGACTCGAGAATAGCTTTGCGATCTTGGACCGCCTCACTGAAAGCCTGA
 
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rJMSF033C04+          AATTCCCCAAGAAAAAAGATTCTGCAAAAGGGAAAGTTTTGATGCAAGCTTTGTATGGAG
rJMFF019C07+          AATTCCCCAAGAAAAAAGATTCTGCAAAAGGGAAAGTTTTGATGCAAGCTTTGTATGGAG
rJMFF029N13+          AATTCCCCAAGAAAAAAGATTCTGCAAAAGGGAAAGTTTTGATGCAAGCTTTGTATGGAG
rJMFF039E10+          AATTCCCCAAGAAAAAAGATTCTGCAAAAGGGAAAGTTTTGATGCAAGCTTTGTATGGAG
rJMFF039B21+          AATTCCCCAAGAAAAAAGATTCTGCAAAAGGGAAAGTTTTGATGCAAGCTTTGTATGGAG
rJMFF042F20+                                 GCAAAAGGGAAAGTTTGATCGCAAGCTTGNTATGGAG
                      ____________________________________________________________
consensus             AATTCCCCAAGAAAAAAGATTCTGCAAAAGGGAAAGTTTTGATGCAAGCTTTGTATGGAG
 
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rJMSF033C04+          TGCAGGTGATAACCATTTTCTTGTGCAGTTTAGTTGCCAGTGGCTTCTCGGGTTCCATAA
rJMFF019C07+          TGCAGGTGATAACCATTTTCTTGTGCAGTTTAGTTGCCAGTGGCTTCTCGGGTTCCATAA
rJMFF029N13+          TGCAGGTGATAACCATTTTCTTGTGCAGTTTAGTTGCCAGTGGCTTCTCGGGTTCCATAA
rJMFF039E10+          TGCAGGTGATAACCATTTTCTTGTGCAGTTTAGTTGCCAGTGGCTTCTCGGGTTCCATAA
rJMFF039B21+          TGCAGGTGATAACCATTTTCTTGTGCAGTTTAGTTGCCAGTGGCTTCTCGGGTTCCATAA
rJMFF042F20+          TGCAGGTGATAACCATTTTCTTGTGCAGTTTAGTTGCCAGTGGCTTCTCGGGTTCCATAA
                      ____________________________________________________________
consensus             TGCAGGTGATAACCATTTTCTTGTGCAGTTTAGTTGCCAGTGGCTTCTCGGGTTCCATAA
 
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rJMSF033C04+          AGAAACTGAAGCAGTTTGAGGTTCTCGAGGGTTGCTCGTGGGCAGAAGCTTTTGCTAATC
rJMFF019C07+          AGAAACTGAAGCAGTTTGAGGTTCTCGAGGGTTGCTCGTGGGCAGAAGCTTTTGCTAATC
rJMFF029N13+          AGAAACTGAAGCAGTTTGAGGTTCTCGAGGGTTGCTCGTGGGCAGAAGCTTTTGCTAATC
rJMFF039E10+          AGAAACTGAAGCAGTTTGAGGTTCTCGAGGGTTGCTCGTGGGCAGAAGCTTTTGCTAATC
rJMFF039B21+          AGAAACTGAAGCAGTTTGAGGTTCTCGAGGGTTGCTCGTGGGCAGAAGCTTTTGCTAATC
rJMFF042F20+          AGAAACTGAAGCAGTTTGAGGTTCTCGAGGGTTGCTCGTGGGCAGAAGCTTTTGCTAATC
                      ____________________________________________________________
consensus             AGAAACTGAAGCAGTTTGAGGTTCTCGAGGGTTGCTCGTGGGCAGAAGCTTTTGCTAATC
 
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rJMSF033C04+          TGCAGAGTTTGATTAACAACGAAATCAGTGGAGGGGTAACAGCACCGAAGGAGCTTGAAG
rJMFF019C07+          TGCAGAGTTTGATTAACAACGAAATCAGTGGAGGGGTAACAGCACCGAAGGAGCTTGAAG
rJMFF029N13+          TGCAGAGTTTGATTAACAACGAAATCAGTGGAGGGGTAACAGCACCGAAGGAGCTTGAAG
rJMFF039E10+          TGCAGAGTTTGATTAACAACGAAATCAGTGGAGGGGTAACAGCACCGAAGGAGCTTGAAG
rJMFF039B21+          TGCAGAGTTTGATTAACAACGAAATCAGTGGAGGGGTAACAGCACCGAAGGAGCTTGAAG
rJMFF042F20+          TGCAGAGTTTGATTAACAACGAAATCAGTGGAGGGGTAACAGCACCGAAGGAGCTTGAAG
                      ____________________________________________________________
consensus             TGCAGAGTTTGATTAACAACGAAATCAGTGGAGGGGTAACAGCACCGAAGGAGCTTGAAG
 
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rJMSF033C04+          CAGTTGACGCAATTGTCAAGACGCTATACCCCATGATTGAGTCGGGGGGATCAAACCCAG
rJMFF019C07+          CAGTTGACGCAATTGTCAAGACGCTATACCCCATGATTGAGTCGGGGGGATCAAACCCAG
rJMFF029N13+          CAGTTGACGCAATTGTCAAGACGCTATACCCCATGATTGAGTCGGGGGGATCAAACCCAG
rJMFF039E10+          CAGTTGACGCAATTGTCAAGACGCTATACCCCATGATTGAGTCGGGGGGATCAAACCCAG
rJMFF039B21+          CAGTTGACGCAATTGTCAAGACGCTATACCCCATGATTGAGTCGGGGGGATCAAACCCAG
rJMFF042F20+          CAGTTGACGCAATTGTCAAGACGCTATACCCCATGATTGAGTCGGGGGGATCAAACCCAG
                      ____________________________________________________________
consensus             CAGTTGACGCAATTGTCAAGACGCTATACCCCATGATTGAGTCGGGGGGATCAAACCCAG
 
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rJMSF033C04+          CGGAAGCTGGAGGATTGCAAAACGCGACTTCAGAGTTGGCAAAGAACACAGACAAATTGG
rJMFF019C07+          CGGAAGCTGGAGGATTGCAAAACGCGACTTCAGAGTTGGCAAAGAACACAGACAAATTGG
rJMFF029N13+          CGGAAGCTGGAGGATTGCAAAACGCGACTTCAGAGTTGGCAAAGAACACAGACAAATTGG
rJMFF039E10+          CGGAAGCTGGAGGATTGCAAAACGCGACTTCAGAGTTGGCAAAGAACACAGACAAATTGG
rJMFF039B21+          CGGAAGCTGGAGGATTGCAAAACGCGACTTCAGAGTTGGCAAAGAACACAGACAAATTGG
rJMFF042F20+          CGGAAGCTGGAGGATTGCAAAACGCGACTTCAGAGTTGGCAAAGAACACAGACAAATTGG
                      ____________________________________________________________
consensus             CGGAAGCTGGAGGATTGCAAAACGCGACTTCAGAGTTGGCAAAGAACACAGACAAATTGG
 
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rJMSF033C04+          CGGAGGGGCTGGATGTATTGGCAAAGGAAGTAGATGGATTCTTCCAAATTGTGCTGACAG
rJMFF019C07+          CGGAGGGGCTGGATGTATTGGCAAAGGAAGTAGATGGATTCTTCCAAATTGTGCTGACAG
rJMFF029N13+          CGGAGGGGCTGGATGTATTGGCAAAGGAAGTAGATGGATTCTTCCAAATTGTGCTGACAG
rJMFF039E10+          CGGAGGGGCTGGATGTATTGGCAAAGGAAGTAGATGGATTCTTCCAAATTGTGCTGACAG
rJMFF039B21+          CGGAGGGGCTGGATGTATTGGCAAAGGAAGTAGATGGATTCTTCCAAATTGTGCTGACAG
rJMFF042F20+          CGGAGGGGCTGGATGTATTGGCAAAGGAAGTAGATGGATTCTTCCAAATTGTGCTGACAG
                      ____________________________________________________________
consensus             CGGAGGGGCTGGATGTATTGGCAAAGGAAGTAGATGGATTCTTCCAAATTGTGCTGACAG
 
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rJMSF033C04+          GGCGCGACGCGATGCTTTCTAACATTAGAGTTGGCAGTAAGATCTCCCAACAAGATAAGA
rJMFF019C07+          GGCGCGACGCGATGCTTTCTAACATTAGAGTTGGCAGTAAGATCTCCCAACAAGATAAGA
rJMFF029N13+          GGCGCGACGCGATGCTTTCTAACATTAGAGTTGGCAGTAAGATCTCCCAACAAGATAAGA
rJMFF039E10+          GGCGCGACGCGATGCTTTCTAACATTAGAGTTGGCAGTAAGATCTCCCAACAAGATAAGA
rJMFF039B21+          GGCGCGACGCGATGCTTTCTAACATTAGAGTTGGCAGTAAGATCTCCCAACAAGATAAGA
rJMFF042F20+          GGCGCGACGCGATGCTTTCTAACATTAGAGTTGGCAGTAAGATCTCCCAACAAGATAAGA
rJMFF048N20+                                       GTTGGCAGTAAGTTTTCCCAACAAGATAAGA
                      ____________________________________________________________
consensus             GGCGCGACGCGATGCTTTCTAACATTAGAGTTGGCAGTAAGATCTCCCAACAAGATAAGA
 
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rJMSF033C04+          AAAAATGTAGAGGTGCAAATAGTGAGACAAACAACAGGGGACATGTATCTTCTTTTGTAC
rJMFF019C07+          AAAAATGTAGAGGTGCAAATAGTGAGACAAACAACAGGGGACATGTATCTTCTTTTGTAC
rJMFF029N13+          AAAAATGTAGAGGTGCAAATAGTGAGACAAACAACAGGGGACATGTATCTTCTTTTGTAC
rJMFF039E10+          AAAAATGTAGAGGTGCAAATAGTGAGACAAACAACAGGGGACATGTATCTTCTTTTGTAC
rJMFF039B21+          AAAAATGTAGAGGTGCAAATAGTGAGACAAACAACAGGGGACATGTATCTTCTTTTGTAC
rJMFF042F20+          AAAAATGTAGAGGTGCAAATAGTGAGACAAACAACAGGGGACATGTATCTTCTTTTGTAC
rJMFF048N20+          AAAAATGTAGAGGTGCAAATAGTGAGACAACCAACAGGGGACATGTATTTTTTTTTGTAC
                      ____________________________________________________________
consensus             AAAAATGTAGAGGTGCAAATAGTGAGACAAACAACAGGGGACATGTATCTTCTTTTGTAC
 
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rJMSF033C04+          ACAAAGGGGCTGCTTAGATGTGAGATTTTATGTTATCTGCTTCATTATGTAGTATTCAAC
rJMFF019C07+          ACAAAGGGGCTGCTTAGATGTGAGATTTTATGTTATCTGCTTCATTATGTAGTATTCAAC
rJMFF029N13+          ACAAAGGGGCTGCTTAGATGTGAGATTTTATGTTATCTGCTTCATTATGTAGTATTCAAC
rJMFF039E10+          ACAAAGGGGCTGCTTAGATGTGAGATTTTATGTTATCTGCTTCATTATGTAGTATTCAAC
rJMFF039B21+          ACAAAGGGGCTGCTTAGATGTGAGATTTTATGTTATCTGCTTCATTATGTAGTATTCAAC
rJMFF042F20+          ACAAAGGGGCTGCTTAGATGTGAGATTTTATGTTATCTGCTTCATTATGTAGTATTCAAC
rJMFF048N20+          ACAAAGGGGCTGCTTAGATGGGAGATTTTAGGTTATCTGCTTCATTATGTAGTATTCAAC
                      ____________________________________________________________
consensus             ACAAAGGGGCTGCTTAGATGTGAGATTTTATGTTATCTGCTTCATTATGTAGTATTCAAC
 
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rJMSF033C04+          A                                                           
rJMFF019C07+          ACATACTATCAAAATA                                            
rJMFF029N13+          ACATACTATCAAAATATAAT                                        
rJMFF039E10+          ACATACTATCAAAATATAATA                                       
rJMFF039B21+          ACATACTATCAAAATATAATATATCAAAG                               
rJMFF042F20+          ACATACTATCAAAATATAATATATCAAAGGTTTGTATTAAAGTTGCC             
rJMFF048N20+          CCATACTATCAAAATATAATATATCAAA-GTTTGTATTAAAGTTGCCAGCTAGAAAAGCC
                      ____________________________________________________________
consensus             ACATACTATCAAAATATAATATATCAAAGGTTTGTATTAAAGTTGCCAGCTAGAAAAGCC
 
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rJMFF048N20+          CATCGGGAGTTTTTCATTTAACCACTTTGGTGAATGAACAATTTTGGAATGCCCATTAAT
                      ____________________________________________________________
consensus             CATCGGGAGTTTTTCATTTAACCACTTTGGTGAATGAACAATTTTGGAATGCCCATTAAT