Contig 005532:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF018J22Sequence500010211 (5)ref|XP_009778931.1|6e-36PREDICTED: ubiquitin carboxyl-terminal hydrolase 9-like [Nicotiana sylvestris]629005532 (4)ref|XP_009778931.1|3e-23PREDICTED: ubiquitin carboxyl-terminal hydrolase 9-like [Nicotiana sylvestris]
JMFF046E23Sequence608010211 (5)ref|XP_011081365.1|2e-47PREDICTED: ubiquitin carboxyl-terminal hydrolase 9 [Sesamum indicum]536005532 (4)
JMFS101D09Sequence586005532 (4)ref|XP_009778931.1|2e-30PREDICTED: ubiquitin carboxyl-terminal hydrolase 9-like [Nicotiana sylvestris]
JMSF050H01Sequence701005532 (4)ref|XP_009778931.1|8e-25PREDICTED: ubiquitin carboxyl-terminal hydrolase 9-like [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS101D09- CATCCGAGGGTGCAGAGTT
                      ____________________________________________________________
consensus CATCCGAGGGTGCAGAGTT
 
. : . : . : . : . : . :
JMFS101D09- TTATGAGTTGTTTGCCATCAGTAATCATTATGGTGGCCTAGGTGGTGGGCATTACTCTGC
rJMFF018J22+ GGGCATTACTCTGC
rJMSF050H01+ GCCATCAGTAATCATTANGGTGGCATAGGTGGTGGGCATTACTCTGC
                      ____________________________________________________________
consensus TTATGAGTTGTTTGCCATCAGTAATCATTATGGTGGCCTAGGTGGTGGGCATTACTCTGC
 
. : . : . : . : . : . :
JMFS101D09- TTACTGCAAGTTAGTCGATGAGAACAAATGGTATCATTTCGATGATTCCCATGTTTCTGC
rJMFF018J22+ TTACTGCAAGTTAGTCGATGAGAACAAATGGTATCATTTCGATGATTCCCATGTTTCTGC
rJMSF050H01+ TTACTGCAAGTTAGTCGATGAGAACAAATGGTATCATTTCGATGATTCCCATGTTTCTGC
                      ____________________________________________________________
consensus TTACTGCAAGTTAGTCGATGAGAACAAATGGTATCATTTCGATGATTCCCATGTTTCTGC
 
. : . : . : . : . : . :
JMFS101D09- TGTTGCCGAGTCTGATATAAAGACATCAGCTGCCTATGTGCTCTTCTACCAACGAGTTAA
rJMFF018J22+ TGTTGCCGAGTCTGATATAAAGACATCAGCTGCCTATGTGCTCTTCTACCAACGAGTTAA
rJMSF050H01+ TGTTGCCGAGTCTGATATAAAGACATCAGCTGCCTATGTGCTCTTCTACCAACGANTTAA
                      ____________________________________________________________
consensus TGTTGCCGAGTCTGATATAAAGACATCAGCTGCCTATGTGCTCTTCTACCAACGAGTTAA
 
. : . : . : . : . : . :
JMFS101D09- GGTGCAAGAAAACGGAACGACTGGAGGACCATCCCACAGTCATACATCATGAAGGCTTTT
rJMFF018J22+ GGTGCAAGAAAACGGAACGACTGGAGGACCATCCCACAGTCATACATCATGAAGGCTTTT
rJMSF050H01+ GGTGCAAGAAAACGGAACGACTGGAGGACCATCCCACAGTCATACATCATGAAGGCTTTN
rJMFF046E23+ CAAGAAAACGGAACGACTGGAGGACCATCCCACAGTCATACATCATGAAGGCTTTT
                      ____________________________________________________________
consensus GGTGCAAGAAAACGGAACGACTGGAGGACCATCCCACAGTCATACATCATGAAGGCTTTT
 
. : . : . : . : . : . :
JMFS101D09- GCTTAACGTCTGTTTGCCATAATCTATTATTTGGTGCTTCACTTCTTCGAAGGAACTATC
rJMFF018J22+ GCTTAACGTCTGTTTGCCATAATCTATTATTTGGTGCTTCACTTCTTCGAAGGAACTATC
rJMSF050H01+ GCTTAACGTCTGTTNGCCATAATCTATTATTTGGTGCTTCACTTCTTCGAAGGAACTATC
rJMFF046E23+ GCTTAACGTCTGTTTGCCATAATCTATTATTTGGTGCTTCACTTCTTCGAAGGAACTATC
                      ____________________________________________________________
consensus GCTTAACGTCTGTTTGCCATAATCTATTATTTGGTGCTTCACTTCTTCGAAGGAACTATC
 
. : . : . : . : . : . :
JMFS101D09- AACTCGAGCAATACTTACACACCAAGCGGGTATACACGAAGTTGTAGCTCACTTGGTTTG
rJMFF018J22+ AACTCGAGCAATACTTACACACCAAGCGGGTATACACGAAGTTGTAGCTCACTTGGTTTG
rJMSF050H01+ AACTCGAGCAATACTTACACACCAAGCGGGTATACACGAAGTTGTAGCTCACTTGGTTTG
rJMFF046E23+ AACTCGAGCAATACTTACACACCAAGCGGGTATACACGAAGTTGTAGCTCACTTGGTTTG
                      ____________________________________________________________
consensus AACTCGAGCAATACTTACACACCAAGCGGGTATACACGAAGTTGTAGCTCACTTGGTTTG
 
. : . : . : . : . : . :
JMFS101D09- CCGCCTTGCCGGTGTATGATGGAGACAATAGAAAGCATGCTTTAAGGTGAAGCATATGCA
rJMFF018J22+ CCGCCTTGCCGGTGTATGATGGAGACAATAGAAAGCATGCTTTAAGGTGAAGCATATGCA
rJMSF050H01+ CCGCCTTGCCGGTGTATGATGGAGACAATAGAAAGCATGCTTTAAGGTGAAGCATATGCA
rJMFF046E23+ CCGCCTNGCCGGTGTATGATGGAGACAATAGAAAGCATGCTTTAAGGTGAAGCATATGCA
                      ____________________________________________________________
consensus CCGCCTTGCCGGTGTATGATGGAGACAATAGAAAGCATGCTTTAAGGTGAAGCATATGCA
 
. : . : . : . : . : . :
JMFS101D09- GTTTTGTGGAGCAGCTAGGGCACAGAGGGATAGGGGAGAGTCTTAATGGAAGCAAGAGTT
rJMFF018J22+ GTTTTGTGGAGCAGCTAGGGCACAGAGGGATAGGGGAGAGTCTTAATGGAGGCAAGAGTT
rJMSF050H01+ GTTTTGTGGAGCAGCTAGGGCACAGAGGGATAGGGGAGAGTCTTAATGGAAGCAAGAGTT
rJMFF046E23+ GTTTTGTGGAGCAGCTAGGGCACAGAGGGATAGGGGAGAGTCTTAATGGAGGCAAGAGTT
                      ____________________________________________________________
consensus GTTTTGTGGAGCAGCTAGGGCACAGAGGGATAGGGGAGAGTCTTAATGGAAGCAAGAGTT
 
. : . : . : . : . : . :
JMFS101D09- GTAGTATTGTAGACTAGCAGCAGGGGCCCTTTTTCAGA-TTAAAAATTAATTATTTTATC
rJMFF018J22+ GTAGTATTGTAGACTAGCAGCAGGGGCCCTTTTTCAGATTTAAAAATTAATTATTTTATC
rJMSF050H01+ GTAGTATTGTAGACTAGCAGCAGGGGCCCTTTTTCAGATTTAAAAANTAATTATNTTATC
rJMFF046E23+ GTAGTATTGTAGACTAGCAGCAGGGGCCCTTTTTCAGATTTAAAAATTAATTATTTNATC
                      ____________________________________________________________
consensus GTAGTATTGTAGACTAGCAGCAGGGGCCCTTTTTCAGATTTAAAAATTAATTATTTTATC
 
. : . : . : . : . : . :
JMFS101D09- GTTATTCGAAAGGCATAAAATGGTTGCA
rJMFF018J22+ GTTATTCGAAAGGCATAAAATGGTTGCATTTTCTTATGGCTCCGTATTTATTACTGTATT
rJMSF050H01+ GTTATTCGAAAGGCATAAAATGGTTGCATTTTCTTATGGCTCCGTATTTATTACTGTATT
rJMFF046E23+ GTTATTCGAAAGGCATAAAATGGTTGCATTTTCTTATGGCTCCGTATTTATTACTGTATT
                      ____________________________________________________________
consensus GTTATTCGAAAGGCATAAAATGGTTGCATTTTCTTATGGCTCCGTATTTATTACTGTATT
 
. : . : . : . : . : . :
rJMFF018J22+ CTTTTGAAAAATGGTAGTGTCAGCAAGGCTTGTAGGAATGTTTGGGGGGTAGGGGATAGA
rJMSF050H01+ C-TTCGAAAAATGGTAGTGTCAGCAAGGCTTGTAGGAATGTTTGGGGGGTAGGGGATAGA
rJMFF046E23+ CTTTTGAAAAATGGTAGTGTCAGCAAGGCTTGTAGGAATGTTTGGGGGGTAGGGGATAGA
                      ____________________________________________________________
consensus CTTTTGAAAAATGGTAGTGTCAGCAAGGCTTGTAGGAATGTTTGGGGGGTAGGGGATAGA
 
. : . : . : . : . : . :
rJMFF018J22+ AAAACCATTTATAAT
rJMSF050H01+ AAAACCATTTATAATGGGTATTTCCTACTCCGATATTGAATTCTTGCAGAGTTT
rJMFF046E23+ AAAACCATTTATAATGGGTATTTCCTACTCTGATATTGAATTCTTGCAGAGTTTAAACCC
                      ____________________________________________________________
consensus AAAACCATTTATAATGGGTATTTCCTACTCTGATATTGAATTCTTGCAGAGTTTAAACCC