Contig 005529:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF046C06Sequence603008875 (2)ref|XP_006352669.1|2e-57PREDICTED: pentatricopeptide repeat-containing protein At3g25210, mitochondrial530005529 (3)ref|XP_006343172.1|9e-05PREDICTED: rRNA methyltransferase 1, mitochondrial-like [Solanum tuberosum]
JMSF013B14Sequence489008875 (2)emb|CDP03932.1|1e-35unnamed protein product [Coffea canephora]728005529 (3)ref|XP_010110885.1|3e-08Mitochondrial rRNA methyltransferase [Morus notabilis] gb|EXC28704.1| Mitochondr
JMSF014B14Sequence134005529 (3)

Alignment

This contig is upended


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rJMSF013B14+                                   ACTGCAGTGGTGGTGCTATGTGCCAACTTTGCTCC
                      ____________________________________________________________
consensus                                      ACTGCAGTGGTGGTGCTATGTGCCAACTTTGCTCC
 
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rJMSF013B14+          ATTAAGTGGAGCTGTGGGCAAAGTGAGTCCAGGCTCTCTTGAATTAGTGGATGTTAGATA
                      ____________________________________________________________
consensus             ATTAAGTGGAGCTGTGGGCAAAGTGAGTCCAGGCTCTCTTGAATTAGTGGATGTTAGATA
 
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rJMSF013B14+          TTGCAAGAACACTGAACTTTTTGGCATCTTCAGCTGTTTGGAGGTTATACGAGTCTCACT
                      ____________________________________________________________
consensus             TTGCAAGAACACTGAACTTTTTGGCATCTTCAGCTGTTTGGAGGTTATACGAGTCTCACT
 
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rJMSF014B14+             TTCAAGAGTCATTCCCTNGGATGANNTGTGCATGGTGTTCNTACAATNTTTATCTTN
rJMSF013B14+          ATGTTCAAGAGTCATTCCCTTGGATGAGCTGTGCCTGGTGTTCCTACAATCTTTATTTTG
                      ____________________________________________________________
consensus             ATGTTCAAGAGTCATTCCCTTGGATGAGCTGTGCCTGGTGTTCCTACAATCTTTATTTTG
 
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rJMSF014B14+          GGCAGTGAAGNCANTAGTGTGGTTGATGAGGGNAAACTGCAGCCACAACTCGAGGTGNGC
rJMSF013B14+          GGCAGTGAAGGCACTAGTGTGGTTGATGAGGGAAAACTGCAGCCACAACTCGAGGTGTGC
                      ____________________________________________________________
consensus             GGCAGTGAAGGCACTAGTGTGGTTGATGAGGGAAAACTGCAGCCACAACTCGAGGTGTGC
 
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rJMSF014B14+          ANTGGGTAAAC                                                 
rJMSF013B14+          ACTGGGTAAACCTCGTCCTGTAACTCTAGTTGGCAAAGGATTACAAGGAGGTAAACCAGC
rJMFF046C06+                    CCTCGTCCTGTAACTCTAGTGGGCAAAGGATTACAAGGAGGTAAACCAGC
                      ____________________________________________________________
consensus             ACTGGGTAAACCTCGTCCTGTAACTCTAGTTGGCAAAGGATTACAAGGAGGTAAACCAGC
 
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rJMSF013B14+          TTAGGTTGTCGCCCATAGTTGACCCACTCAAACCAAGAAGGGTGGGATTTGAACTCGTGA
rJMFF046C06+          TTAGGTTGTCGCCCATAGTTGACCCACTCAAACCAAGAAGGGTGGGATTTGAACTCGTGA
                      ____________________________________________________________
consensus             TTAGGTTGTCGCCCATAGTTGACCCACTCAAACCAAGAAGGGTGGGATTTGAACTCGTGA
 
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rJMSF013B14+          TCTTGTGATTACAAGTCTTTATCCTTAACCAATTTGGCTGGAGTTATCCCATGAAGGCAC
rJMFF046C06+          TCTTGTGATTACAAGTCTTTATCCTTAACCAATTTGGCTGGAGTTATCCCATGAAGGCAC
                      ____________________________________________________________
consensus             TCTTGTGATTACAAGTCTTTATCCTTAACCAATTTGGCTGGAGTTATCCCATGAAGGCAC
 
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rJMSF013B14+          TAGTTTGAGGTTATTTGTAGCAAGGTCTGTGCTAAGTTATTTATAATTCCATGAATCATA
rJMFF046C06+          TAGTTTGAGGTTATTTGTAGCAAGGTCTGTGCTAAGTTATTTATAATTCCATGAATCATA
                      ____________________________________________________________
consensus             TAGTTTGAGGTTATTTGTAGCAAGGTCTGTGCTAAGTTATTTATAATTCCATGAATCATA
 
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rJMSF013B14+          CCTGTGGATATAATTGCTAAGGGGTGACGAAGATGTGACAGATGATGGTTGTTCAGGTCC
rJMFF046C06+          CCTGTGGATATAATTGCTAAGGGGTGACGAAGATGTGACAGATGATGGTTGTTCAGGTCC
                      ____________________________________________________________
consensus             CCTGTGGATATAATTGCTAAGGGGTGACGAAGATGTGACAGATGATGGTTGTTCAGGTCC
 
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rJMSF013B14+          CAGCTTCAAGTCCTTCATGGCTATAAAGAGCTTGAACATTGGTTTTGCAGCAGGTGCACT
rJMFF046C06+          CAGCTTCAAGTCCTTCATGGCTATAAAGAGCTTGAACATTGGTTTTGCAGCAGGTGCACT
                      ____________________________________________________________
consensus             CAGCTTCAAGTCCTTCATGGCTATAAAGAGCTTGAACATTGGTTTTGCAGCAGGTGCACT
 
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rJMSF013B14+          TCTTCATCTTGATAGGTGGGAACTGCATGAAAAGTAACCATCACAAGAAAGAACACTGAT
rJMFF046C06+          TCTTCATCTTGATAGGTGGGAACTGCATGAAAAGTAACCATCACAAGAAAGAACACTGAT
                      ____________________________________________________________
consensus             TCTTCATCTTGATAGGTGGGAACTGCATGAAAAGTAACCATCACAAGAAAGAACACTGAT
 
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rJMSF013B14+          ATTTGTAATTTCTTCTTAAAACAAACTAATTTG                           
rJMFF046C06+          ATTTGTAATTTCTTCTTAAAACAAACTAATTTGCTGACATCTGAAAAGTGAAAATTCCTA
                      ____________________________________________________________
consensus             ATTTGTAATTTCTTCTTAAAACAAACTAATTTGCTGACATCTGAAAAGTGAAAATTCCTA
 
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rJMFF046C06+          ATTGCGCAATTGTTATTTATATTATCAAAAGAAATGTTTTAGAAGTACAAAAAAAAAAAG
                      ____________________________________________________________
consensus             ATTGCGCAATTGTTATTTATATTATCAAAAGAAATGTTTTAGAAGTACAAAAAAAAAAAG