| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF034A09 | Sequence | 551 | 009494 (10) | ref|XP_004230866.1| | 9e-47 | PREDICTED: SWI/SNF complex subunit SWI3D [Solanum lycopersicum] | 737 | 005519 (5) | emb|CAN61314.1| | 7e-19 | hypothetical protein VITISV_013389 [Vitis vinifera] |
| JMFF045D11 | Sequence | 557 | 019565 | ref|XP_011088374.1| | 2e-08 | PREDICTED: SWI/SNF complex subunit SWI3D [Sesamum indicum] | 497 | 005519 (5) | |||
| JMFN016K01 | Sequence | 600 | 005519 (5) | emb|CAN61314.1| | 2e-42 | hypothetical protein VITISV_013389 [Vitis vinifera] | |||||
| JMSF009I19 | Sequence | 342 | 009494 (10) | ref|XP_009589593.1| | 1e-17 | PREDICTED: SWI/SNF complex subunit SWI3D [Nicotiana tomentosiformis] | 782 | 005519 (5) | emb|CAN61314.1| | 3e-38 | hypothetical protein VITISV_013389 [Vitis vinifera] |
| JMSF041L02 | Sequence | 818 | 009494 (10) | ref|XP_004230866.1| | 4e-86 | PREDICTED: SWI/SNF complex subunit SWI3D [Solanum lycopersicum] | 692 | 005519 (5) | emb|CAN61314.1| | 2e-25 | hypothetical protein VITISV_013389 [Vitis vinifera] |
This contig is upended
. : . : . : . : . : . :
JMFN016K01- ATTCGGA
____________________________________________________________
consensus ATTCGGA
. : . : . : . : . : . :
JMFN016K01- AGCTTGCTGCATCATTAATAGAAAAACAGTTACACAAGCTGGAGACCAAGTTGGGCTTCT
rJMSF041L02+ ACCAAGTTGGGCTTTT
rJMSF009I19+ AGAAAACCAGTTACACAAGCTGGAGACCAAGTTGGGCTTTT
____________________________________________________________
consensus AGCTTGCTGCATCATTAATAGAAAACCAGTTACACAAGCTGGAGACCAAGTTGGGCTTTT
. : . : . : . : . : . :
JMFN016K01- TCAGTGAGATGGAGACCACCTTAGTAAGGGTTAGAGAACAGTTGGATAGGTCAAAACAGA
rJMSF041L02+ TCAGTGAGATGGAGACCACCTTAGTAA-GGTTAGAGAACAGTNGGATAGGTCAAAACAGA
rJMSF009I19+ TCAGTGAGATGGAGACCACCTTAGTAAGGGTTAGAGAACAGTTGGATAGGTCAAAACAGA
rJMFF034A09+ GGTTAGAGAACAGTTGGATAGGTCAAAACAGA
____________________________________________________________
consensus TCAGTGAGATGGAGACCACCTTAGTAAGGGTTAGAGAACAGTTGGATAGGTCAAAACAGA
. : . : . : . : . : . :
JMFN016K01- AAC-TTTTCCATGAGAGAGCACAGATAATTGCAAGCCGATTTGGCATTTCTGGATCCTCA
rJMSF041L02+ AAC-TTTTCCATGAGAGAGCACAGATAATTGCAAACCGATTTGGCATTTCTGGATCCTCA
rJMSF009I19+ AAC-TTTTCCATGAGAGAGCACAGATAATTGCAAGCCGATTTGGCATTTCTGGATCCTCA
rJMFF034A09+ AACTTTTTCCATGAGAGAGCACAGATAATTGCAAGCCGATTTGGCATTTCTGGATCCTCA
____________________________________________________________
consensus AAC-TTTTCCATGAGAGAGCACAGATAATTGCAAGCCGATTTGGCATTTCTGGATCCTCA
. : . : . : . : . : . :
JMFN016K01- GCTCGTCCCATGTCACAACCATTACCTGCCAACAAACCTGGAATGACTTTTCCTGGGACA
rJMSF041L02+ GCTCGTCCCATGTCACAACCATTACCTGCCAACAAACCTGGAATGACTTTTCCTGGGACA
rJMSF009I19+ GCTCGTCCCATGTCACAACCATTACCTGCCAACAAACCTGGAATGACTTTTCCTGGGACA
rJMFF034A09+ GCTCGTCCCATGTCACAACCATTACCTGCCAACAAACCTGGAATGACTTTTCCTGGGACA
____________________________________________________________
consensus GCTCGTCCCATGTCACAACCATTACCTGCCAACAAACCTGGAATGACTTTTCCTGGGACA
. : . : . : . : . : . :
JMFN016K01- GCTCCTAGGCCGTTAACTGGCATGGGCCCTGCAATAAGGCCACCAATTTCCAGGCCCCTG
rJMSF041L02+ GCTCCTAGGCCGTTAACTGGCATGGGCCCTGCAATAAGGCCACCAATTTCCAGGCCCCTG
rJMSF009I19+ GCTCCTAGGCCGTTAACTGGCATGGGCCCTGCAATAAGGCCACCAATTTCCAGGCCCCTG
rJMFF034A09+ GCTCCTAGGCCGTTAACTGGCATGGGCCCTGCAATAAGGCCACCAATTTCCAGGCCCCTG
____________________________________________________________
consensus GCTCCTAGGCCGTTAACTGGCATGGGCCCTGCAATAAGGCCACCAATTTCCAGGCCCCTG
. : . : . : . : . : . :
JMFN016K01- ATGGCATCAATGCCTGCTCCCAGCTCATTTATGCCCACAGCAGTTGCAGGTAGTTCGGTA
rJMSF041L02+ ATGGCATCAATGCCTGCTCCCAGCTCATTTATGCCCACAGCAGTTGCAGGTAGTTCGGTA
rJMSF009I19+ ATGGCATCAATGCCTGCTCCCAGCTCATTTATGCCCACAGCAGTTGCAGGTAGTTCGGTA
rJMFF034A09+ ATGGCATCAATGCCTGCTCCCAGCTCATTTATGCCCACAGCAGTTGCAGGTAGTTCGGTA
____________________________________________________________
consensus ATGGCATCAATGCCTGCTCCCAGCTCATTTATGCCCACAGCAGTTGCAGGTAGTTCGGTA
. : . : . : . : . : . :
JMFN016K01- CAACCTTCAAACACAGACAAGGTCTCATCGGTTGGGAATAAGTAATCTTCATTCTCTTGG
rJMSF041L02+ CAACCTTCAAACACAGACAAGGTCTCATCGGTTGGGAATAAGTAATCTTCATTCTCTTGG
rJMSF009I19+ CAACCTTCAAACACAGACAAGGTCTCATCGGTTGGGAATAAGTAATCTTCATTCTCTTGG
rJMFF034A09+ CAACCTTCAAACACAGACAAGGTCTCATCGGTTGGGAATAAGTAATCTTCATTCTCTTGG
rJMFF045D11+ ATCGGTTGGGAATAAGTAATCTTCATTCTCTGGG
____________________________________________________________
consensus CAACCTTCAAACACAGACAAGGTCTCATCGGTTGGGAATAAGTAATCTTCATTCTCTTGG
. : . : . : . : . : . :
JMFN016K01- ATCCATTTTAGTTTTATTAGAGACGAGCCTGGAAACGCCCTCCTTACCCTATTCTTTGTG
rJMSF041L02+ ATCCATTTTAGTTTTATTAGAGACGAGCCTGGAAACGCCCTCCTTACCCTATTCTTTGTG
rJMSF009I19+ ATCCATTTTAGTTTTATTAGAGACGAGCCTGGAAACGCCCTCCTTACCCTATTCTTTGTG
rJMFF034A09+ ATCCATTTTAGTTTTATTAGAGACGAGCCTGGAAACGCCCTCCTTACCCTATTCTTTGTG
rJMFF045D11+ ATCCATTTTAGTTTTATTAGAGATGAGGCCGGAAACGCCCTCCTTACCGTATTCTTTGAG
____________________________________________________________
consensus ATCCATTTTAGTTTTATTAGAGACGAGCCTGGAAACGCCCTCCTTACCCTATTCTTTGTG
. : . : . : . : . : . :
JMFN016K01- TTGCTTTTGAACCCCGGTTGGCCAGAGTGGTCGGTCTCAGTAGTGAAATGCAACAAGCGA
rJMSF041L02+ TTGCTTTTGAACCCCGGTTGGCCAGAGTGGTCGGTCTCAGTAGTGAAATGCAACAAGCGA
rJMSF009I19+ TTGCTTTTGAACCCCGGTTGGCCAGAGTGGTCGGTCTCAGTAGTGAAATGCAACAAGCGA
rJMFF034A09+ TTGCTTTTGAACCCCGGTTGGCCAGAGTGGTCGGTCTCAGTAGTGAAATGCAACAAGCGA
rJMFF045D11+ GGGCTTTTGAACCCCGGTGGGCCAGAGTGGTAGGTCTCAGTAGCGAAATGCAACAAGGGA
____________________________________________________________
consensus TTGCTTTTGAACCCCGGTTGGCCAGAGTGGTCGGTCTCAGTAGTGAAATGCAACAAGCGA
. : . : . : . : . : . :
JMFN016K01- TATATAGTATG-GATCGGACTCTAGTTATGGCGTTCAGCATTAGCAGGTTGCAGT
rJMSF041L02+ TATATAGTATG-GATCGGACTCTAGTTATGGCGTTCAGCATTAGCAGGTTGCAGTTAATT
rJMSF009I19+ TATATAGTATG-GATCGGACTCTAGTTATGGCGTTCAGCATTAGCAGGTTGCAGTTAATT
rJMFF034A09+ TATATAGTATG-GATCGGACTCTAGTTATGGCGTTCAGCATTAGCAGGTTGCAGTTAATT
rJMFF045D11+ TATATAGTATGCGATGGGTCTCTAGTTATGGCGTTCAGCATTAGCAGGTTTCAGTTTATT
____________________________________________________________
consensus TATATAGTATG-GATCGGACTCTAGTTATGGCGTTCAGCATTAGCAGGTTGCAGTTAATT
. : . : . : . : . : . :
rJMSF041L02+ TTTCGGA-GCCTGGCATCTTGGAATAGGCAAAATCCTCGAAAGT
rJMSF009I19+ TTTCGGA-GCCTGGCATCTTGGAATAGGCAAAATCCTCGAAAGTACTTTCCTGCCTATAT
rJMFF034A09+ TTTCGGA-GCCTGGCATCTTGGAATAGGCAAAATCCTCGAAAGTACTTTCCTGCCTATAT
rJMFF045D11+ TTTAGGACACGAGGCATCTTGGAATAGGCAAAATCCTCGAAAGTTTTTTCCTTCAGATAT
____________________________________________________________
consensus TTTCGGA-GCCTGGCATCTTGGAATAGGCAAAATCCTCGAAAGTACTTTCCTGCCTATAT
. : . : . : . : . : . :
rJMSF009I19+ TGTGTCGGACTTCCTGTAGTAAAACCTCATGATTCTTGTAGTCGCATGTATGTGCTAGTA
rJMFF034A09+ TGTGTCGGACTTCCTGTAGTAAAACCTCATGATTCTTGTAGTCGCATGTATGTGCTAGTA
rJMFF045D11+ TGGGTCGGGGTTCGGGTACTAAAGCGTCATTATTCTAGTAGTTGCATGTATCTGTTAGTA
____________________________________________________________
consensus TGTGTCGGACTTCCTGTAGTAAAACCTCATGATTCTTGTAGTCGCATGTATGTGCTAGTA
. : . : . : . : . : . :
rJMSF009I19+ TATGTAAAAACTAGAAGCTTTGGAATGAACATTTTGAGATATTCATAGTAGCAGTAGCTT
rJMFF034A09+ TATGTAAAAACTAGAAGCTTTGGAATGAACATTTTGAGATATTCATAGTAGCAGTAGCTT
rJMFF045D11+ TAAGTAAAAAGTAGAAGTTTCGGAAAGAACATTTTGGGATATTGATAGTAGCAGTAGGTA
____________________________________________________________
consensus TATGTAAAAACTAGAAGCTTTGGAATGAACATTTTGAGATATTCATAGTAGCAGTAGCTT
. : . : . : . : . : . :
rJMSF009I19+ TGGTACATTATATTGTACTGCCCT
rJMFF034A09+ TGGTACATTATATTGTACTGCCCTTT
rJMFF045D11+ TGGTACATTATATTGTACTGCCCTTTTGTGCGCCTTAAGGATAATAGCAATGGGATGTTT
____________________________________________________________
consensus TGGTACATTATATTGTACTGCCCTTTTGTGCGCCTTAAGGATAATAGCAATGGGATGTTT