Contig 005517:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF009J16Sequence561005517 (7)679005517 (7)
JMFF014L23Sequence560005517 (7)762005517 (7)
JMFF028O08Sequence563005517 (7)678005517 (7)
JMFF044H09Sequence580011620 (7)632005517 (7)

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF014L23- ACTCTCCACTCTCCACTCCTCCCAAGTCCCAACAACTCACTCTCGACAGCTCTTCC
JMFF009J16- TCCACTCTCCACTCCTCCCAAGTCCCAACAACTCACTCTCGACAGCTCTTCC
JMFF028O08- TCCACTCTCCACTCCTCCCAAGTCCCAACAACTCACTCTCGACAGCTCTTCC
rJMFF014L23+ CAAGTCCCAACAACTCACTCTCGACAGCTCTTCC
                      ____________________________________________________________
consensus ACTCTCCACTCTCCACTCCTCCCAAGTCCCAACAACTCACTCTCGACAGCTCTTCC
 
. : . : . : . : . : . :
JMFF014L23- CAACAACAACTCATTCTCAGGTTCCTCTCCGGCACTCTCAGGTTCTTCTCCAGCAACAAC
JMFF009J16- CAACAACAACTCATTCTCAGGTTCCTCTCCGGCACTCTCAGGTTCTTCTCCAGCAACAAC
JMFF028O08- CAACAACAACTCATTCTCAGGTTCCTCTCCGGCACTCTCAGGTTCTTCTCCAGCAACAAC
rJMFF028O08+ TCCAGCAACAAC
rJMFF009J16+ CTCCAGCAACAAC
rJMFF014L23+ CAACAACAACTCATTCTCAGGTTCCTCTCCGGCACTCTCAGGTTCTTCTCCAGCAACAAC
                      ____________________________________________________________
consensus CAACAACAACTCATTCTCAGGTTCCTCTCCGGCACTCTCAGGTTCTTCTCCAGCAACAAC
 
. : . : . : . : . : . :
JMFF014L23- TCGCGTCAACATCAACATT-CAACAGACCATTAAGACTCAGCAAAATGAGGAGCTATCTG
JMFF009J16- TCGCGTCAACATCAACATT-CAACAGACCATTAAGACTCAGCAAAATGAGGAGCTATCTG
JMFF028O08- TCGCGTCAACATCAACATT-CAACAGACCATTAAGACTCAGCAAAATGAGGAGCTATCTG
rJMFF028O08+ TCGCGTCAACATCAACATT-CAACAGACCATTAAGACTCAGCAAAATGAGGAGCTATCTG
rJMFF009J16+ TCGCGTCAACATCAACATT-CAACAGACCATTAAGACTCAGCAAAATGAGGAGCTATCTG
rJMFF014L23+ TCGCGTCAACATCAACATTCCAACAGACCATTAAGACTCAGCAAAATGAGGAGCTATCTG
                      ____________________________________________________________
consensus TCGCGTCAACATCAACATT-CAACAGACCATTAAGACTCAGCAAAATGAGGAGCTATCTG
 
. : . : . : . : . : . :
JMFF014L23- GCTGCAGTCTTAATGATCTGGGACGTATGATAAAGGAACAAGAAAGACAACTTACTGCTT
JMFF009J16- GCTGCAGTCTTAATGATCTGGGACGTATGATAAAGGAACAAGAAAGACAACTTACTGCTT
JMFF028O08- GCTGCAGTCTTAATGATCTGGGACGTATGATAAAGGAACAAGAAAGACAACTTACTGCTT
rJMFF028O08+ GCTGCAGTCTTAATGATCTGGGACGTATGATAAAGGAACAAGAAAGACAACTTACTGCTT
rJMFF009J16+ GCTGCAGTCTTAATGATCTGGGACGTATGATAAAGGAACAAGAAAGACAACTTACTGCTT
rJMFF014L23+ GCTGCAGTCTTAATGATCTGGGACGTATGATAAAGGAACAAGAAAGACAACTTACTGCTT
rJMFF044H09+ GATAAAGGAACAAGAAAGACAACTTNCTGCTT
                      ____________________________________________________________
consensus GCTGCAGTCTTAATGATCTGGGACGTATGATAAAGGAACAAGAAAGACAACTTACTGCTT
 
. : . : . : . : . : . :
JMFF014L23- TACTTGAGGAGCACCGCGGCGTTTTGGCCGAGTTAGAGATGCCACTTCAGCTGCATGTTG
JMFF009J16- TACTTGAGGAGCACCGCGGCGTTTTGGCCGAGTTAGAGATGCCACTTCAGCTGCATGTTG
JMFF028O08- TACTTGAGGAGCACCGCGGCGTTTTGGCCGAGTTAGAGATGCCACTTCAGCTGCATGTTG
rJMFF028O08+ TACTTGAGGAGCACCGCGGCGTTTTGGCCGAGTTAGAGATGCCACTTCAGCTGCATGTTG
rJMFF009J16+ TACTTGAGGAGCACCGCGGCGTTTTGGCCGAGTTAGAGATGCCACTTCAGCTGCATGTTG
rJMFF014L23+ TACTTGAGGAGCACCGCGGCGTTTTGGCCGAGTTAGAGATGCCACTTCAGCTGCATGTTG
rJMFF044H09+ TACTTGAGGAGCACCGCGGCGTTTTGGCCGAGTTAGAGATGCCACTTCAGCTGCATGTTG
                      ____________________________________________________________
consensus TACTTGAGGAGCACCGCGGCGTTTTGGCCGAGTTAGAGATGCCACTTCAGCTGCATGTTG
 
. : . : . : . : . : . :
JMFF014L23- AAAGGGCGTTGACAATAGCCAGAAAGTACTGCGAAATAAAAAGCAATCGGGATGAGATAA
JMFF009J16- AAAGGGCGTTGACAATAGCCAGAAAGTACTGCGAAATAAAAAGCAATCGGGATGAGATAA
JMFF028O08- AAAGGGCGTTGACAATAGCCAGAAAGTACTGCGAAATAAAAAGCAATCGGGATGAGATAA
rJMFF028O08+ AAAGGGCGTTGACAATAGCCAGAAAGTACTGCGAAATAAAAAGCAATCGGGATGAGATAA
rJMFF009J16+ AAAGGGCGTTGACAATAGCCAGAAAGTACTGCGAAATAAAAAGCAATCGGGATGAGATAA
rJMFF014L23+ AAAGGGCGTTGACAATAGCCAGAAAGTACTGCGAAATAAAAAGCAATCGGGATGAGATAA
rJMFF044H09+ AAAGGGCGTTGACAATAGCCAGAAAGTACTGCGAAATAAAAAGCAATCGGGATGAGATAA
                      ____________________________________________________________
consensus AAAGGGCGTTGACAATAGCCAGAAAGTACTGCGAAATAAAAAGCAATCGGGATGAGATAA
 
. : . : . : . : . : . :
JMFF014L23- CTGCGCTTAATACTAAATTGGAAATTGTCAACCAGGAAATCGATAAAATCATCAAAGAGG
JMFF009J16- CTGCGCTTAATACTAAATTGGAAATTGTCAACCAGGAAATCGATAAAATCATCAAAGAGG
JMFF028O08- CTGCGCTTAATACTAAATTGGAAATTGTCAACCAGGAAATCGATAAAATCATCAAAGAGG
rJMFF028O08+ CTGCGCTTAATACTAAATTGGAAATTGTCAACCAGGAAATCGATAAAATCATCAAAGAGG
rJMFF009J16+ CTGCGCTTAATACTAAATTGGAAATTGTCAACCAGGAAATCGATAAAATCATCAAAGAGG
rJMFF014L23+ CTGCGCTTAATACTAAATTGGAAATTGTCAACCAGGAAATCGATAAAATCATCAAAGAGG
rJMFF044H09+ CTGCGCTTAATACTAAATTGGAAATTGTCAACCAGGAAATCGATAAAATCATCAAAGAGG
                      ____________________________________________________________
consensus CTGCGCTTAATACTAAATTGGAAATTGTCAACCAGGAAATCGATAAAATCATCAAAGAGG
 
. : . : . : . : . : . :
JMFF014L23- GGAAGCGGTTGGAAGTCTTAAACGATGAGGCGAAAGGCTTCCTTGCCAACTTACAACAAG
JMFF009J16- GGAAGCGGTTGGAAGTCTTAAACGATGAGGCGAAAGGCTTCCTTGCCAACTTACAACAAG
JMFF028O08- GGAAGCGGTTGGAAGTCTTAAACGATGAGGCGAAAGGCTTCCTTGCCAACTTACAACAAG
rJMFF028O08+ GGAAGCGGTTGGAAGTCTTAAACGATGAGGCGAAAGGCTTCCTTGCCAACTTACAACAAG
rJMFF009J16+ GGAAGCGGTTGGAAGTCTTAAACGATGAGGCGAAAGGCTTCCTTGCCAACTTACAACAAG
rJMFF014L23+ GGAAGCGGTTGGAAGTCTTAAACGATGAGGCGAAAGGCTTCCTTGCCAACTTACAACAAG
rJMFF044H09+ GGAAGCGGTTGGAAGTCTTAAACGATGAGGCGAAAGGCTTCCTTGCCAACTTACAACAAG
                      ____________________________________________________________
consensus GGAAGCGGTTGGAAGTCTTAAACGATGAGGCGAAAGGCTTCCTTGCCAACTTACAACAAG
 
. : . : . : . : . : . :
JMFF014L23- CTTTGGACGATTTGGTGAACTTATCACGATCTACATAGGCTTTTATGCCCCTAGGTTTGG
JMFF009J16- CTTTGGACGATTTGGTGAACTTATCACGATCTACATAGGCTTTTATGCCCCTAGGTTTGG
JMFF028O08- CTTTGGACGATTTGGTGAACTTATCACGATCTACATAGGCTTTTATGCCCCTAGGTTTGG
rJMFF028O08+ CTTTGGACGATTTGGTGAACTTATCACGATCTACATAGGCTTTTATGCCCCTAGGTTTGG
rJMFF009J16+ CTTTGGACGATTTGGTGAACTTATCACGATCTACATAGGCTTTTATGCCCCTAGGTTTGG
rJMFF014L23+ CTTTGGACGATTTGGTGAACTTATCACGATCTACATAGGCTTTTATGCCCCTAGGTTTGG
rJMFF044H09+ CTTTGGACGATTTGGTGAACTTATCACGATCTACATAGGCTTTTATGCCCCTAGGTTTGG
                      ____________________________________________________________
consensus CTTTGGACGATTTGGTGAACTTATCACGATCTACATAGGCTTTTATGCCCCTAGGTTTGG
 
. : . : . : . : . : . :
JMFF014L23- ATGCATGGATGCATGATGCACTGTG
JMFF009J16- ATGCATGGATGCATGATGCACTGTGA
JMFF028O08- ATGCATGGATGCATGATGCACTGTGAGA
rJMFF028O08+ ATGCATGGATGCATGATGCACTGTGAGACTTGTAGACTTTTGCTGTGGATTTCTGTAGTG
rJMFF009J16+ ATGCATGGATGCATGATGCACTGTGAGACTTGTAGACTTTTGCTGTGGATTTCTGTAGTG
rJMFF014L23+ ATGCATGGATGCATGATGCACTGTGAGACTTGTAGACTTTTGCTGTGGATTTCTGTAGTG
rJMFF044H09+ ATGCATGGATGCATGATGCACTGTGAGACTTGTAGACTTTTGCTGTGGATTTCTGTAGTG
                      ____________________________________________________________
consensus ATGCATGGATGCATGATGCACTGTGAGACTTGTAGACTTTTGCTGTGGATTTCTGTAGTG
 
. : . : . : . : . : . :
rJMFF028O08+ TTTCTTTGAGGTTCTATGGGATTGTATGATGCTTAATTAGACATTTGGGTCTTTGAACCC
rJMFF009J16+ TTTCTTTGAGGTTCTATGGGATTGTATGATGCTTAATTAGACATTTGGGTCTTTGAACCC
rJMFF014L23+ TTTCTTTGAGGTTCTATGGGATTGTATGATGCTTAATTAGACATTTGGGTCTTTGAACCC
rJMFF044H09+ TTTCTTTGAGGTTCTATGGGATTGTATGATGCTTAATTAGACATTTGGGTCTTTGAACCC
                      ____________________________________________________________
consensus TTTCTTTGAGGTTCTATGGGATTGTATGATGCTTAATTAGACATTTGGGTCTTTGAACCC
 
. : . : . : . : . : . :
rJMFF028O08+ TTGTTTTATGTTTAGCATGTGTGTTTAATTTGTTTGGTGGATTTAGCCGGGCAGCTACCT
rJMFF009J16+ TTGTTTTATGTTTAGCATGTGTGTTTAATTTGTTTGGTGGATTTAGCCGGGCAGCTACCT
rJMFF014L23+ TTGTTTTATGTTTAGCATGTGTGTTTAATTTGTTTGGTGGATTTAGCCGGGCAGCTACCT
rJMFF044H09+ TTGTTTTATGTTTAGCATGTGTGTTTAATTTGTTTGGTGGATTTAGCCGGGCAGCTACCT
                      ____________________________________________________________
consensus TTGTTTTATGTTTAGCATGTGTGTTTAATTTGTTTGGTGGATTTAGCCGGGCAGCTACCT
 
. : . : . : . : . : . :
rJMFF028O08+ AGGAGTGGATAGTTGTGACGGTAACACTAGCCGTGTTATGATTATGAATTCTAATCTTTT
rJMFF009J16+ AGGAGTGGATAGTTGTGACGGTAACACTAGCCGTGTTATGATTATGAATTCTAATCTTTT
rJMFF014L23+ AGGAGTGGATAGTTGTGACGGTAACACTAGCCGTGTTATGATTATGAATTCTAATCTTTT
rJMFF044H09+ AGGAGTGGATAGTTGTGACGGTAACACTAGCCGTGTTATGATTATGAATTCTAATCTTTT
                      ____________________________________________________________
consensus AGGAGTGGATAGTTGTGACGGTAACACTAGCCGTGTTATGATTATGAATTCTAATCTTTT
 
. : . : . : . : . : . :
rJMFF028O08+ ATCTTAT
rJMFF009J16+ ATCTTAT
rJMFF014L23+ ATCTTAT
rJMFF044H09+ ATCTTATTTTAATTTAATGAAATCCGTTTAGCTAAAAAAAAAAAAAAAACTCTCCAGGGT
                      ____________________________________________________________
consensus ATCTTATTTTAATTTAATGAAATCCGTTTAGCTAAAAAAAAAAAAAAAACTCTCCAGGGT