Contig 005500:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF007A11Sequence581002415 (13)emb|CDP03161.1|4e-78unnamed protein product [Coffea canephora]785005500 (15)gb|ABB54381.2|5e-121FVE [Ipomoea nil]
JMFF016M02Sequence623002415 (13)emb|CDP03161.1|2e-87unnamed protein product [Coffea canephora]798005500 (15)gb|ABB54381.2|9e-109FVE [Ipomoea nil]
JMFF024C16Sequence516002415 (13)emb|CDP03161.1|2e-56unnamed protein product [Coffea canephora]775005500 (15)gb|ABB54381.2|4e-130FVE [Ipomoea nil]
JMFF025N12Sequence817005500 (15)gb|ABB54381.2|3e-113FVE [Ipomoea nil]
JMFF027E02Sequence611002415 (13)emb|CDP03161.1|9e-87unnamed protein product [Coffea canephora]749005500 (15)gb|ABB54381.2|1e-113FVE [Ipomoea nil]
JMFF032B09Sequence513005500 (15)gb|ABB54381.2|1e-104FVE [Ipomoea nil]708005500 (15)gb|ABB54381.2|1e-83FVE [Ipomoea nil]
JMFF041N20Sequence658002415 (13)emb|CDP03161.1|1e-89unnamed protein product [Coffea canephora]594005500 (15)gb|ABB54381.2|1e-75FVE [Ipomoea nil]
JMFF042N08Sequence634002415 (13)emb|CDP03161.1|1e-73unnamed protein product [Coffea canephora]582005500 (15)gb|ABB54381.2|1e-47FVE [Ipomoea nil]
JMFF042N14Sequence635002415 (13)emb|CDP03161.1|2e-79unnamed protein product [Coffea canephora]466005500 (15)gb|ABB54381.2|3e-19FVE [Ipomoea nil]
JMFF049C24Sequence641002415 (13)emb|CDP03161.1|3e-66unnamed protein product [Coffea canephora]457005500 (15)gb|ABB54381.2|1e-31FVE [Ipomoea nil]
JMFN039D23Sequence472005500 (15)gb|ABB54381.2|9e-44FVE [Ipomoea nil]
JMSF035G13Sequence707002415 (13)emb|CDP03161.1|5e-110unnamed protein product [Coffea canephora]779005500 (15)gb|ABB54381.2|2e-132FVE [Ipomoea nil]
JMSF040K15Sequence617002415 (13)emb|CDP03161.1|3e-65unnamed protein product [Coffea canephora]860005500 (15)gb|ABB54381.2|8e-117FVE [Ipomoea nil]
JMSF043M18Sequence749002415 (13)emb|CDP03161.1|3e-95unnamed protein product [Coffea canephora]741005500 (15)gb|ABB54381.2|2e-115FVE [Ipomoea nil]

Alignment

This contig is upended


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rJMSF035G13+                                                              TGTTCAGT
                      ____________________________________________________________
consensus                                                                 TGTTCAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF035G13+          TCTGCCCATCAAGTTCACAGGAATTCTGTAGTGTTGGTGATGATTCATG-TCTCATTCTA
rJMFF024C16+          TCTGCCCATCAAGTTCACAGGAATTCTGTAGTGTTGGTGATGATTCATG-TCTCATTCTA
rJMSF043M18+                                                                   CTA
rJMFF007A11+                                                            TCTCATTCTA
rJMSF040K15+          TCTGCCCATCAAGTTCACAGGAATTCTGTAGTGTTGGGGATGATTCATGTTCTCATTCTA
                      ____________________________________________________________
consensus             TCTGCCCATCAAGTTCACAGGAATTCTGTAGTGTTGGTGATGATTCATG-TCTCATTCTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF032B09-                      AGTTGGTACTAGTCCAGTTGTAAAGGTTGAAAAAGCTCATAATGCTGAT
rJMSF035G13+          TGGGATGCTCGAGTTGGTACTAGTCCAGTTGTAAAGGTTGAAAAAGCTCATAATGCTGAT
rJMFF024C16+          TGGGATGCTCGAGTTGGTACTAGTCCAGTTGTAAAGGTTGAAAAAGCTCATAATGCTGAT
rJMFF027E02+          TGGGATGCTCGAGTTCGTACTAGTCCAGTTGTAAAGGTTGAAAAAGCTCATAATGCTGAT
rJMSF043M18+          TGGGATGCTCGAGTTGGTACTAGTCCAGTTGTAAAGGTTGAAAAAGCTCATAATGCTGAT
rJMFF007A11+          TGGGATGCTCGAGTTCGTACTAGTCCAGTTGTAAAGGTTGAAAAAGCTCATAATGCTGAT
rJMSF040K15+          TGGGATGCTCGAGTTGGTACTAGTCCAGTTGTAAAGGTTGAAAAAGCTCATAATGCTGAT
rJMFF016M02+                             CTAGTCCAGTNGTAAAGGTTGAAAAAGCTCATAATGCTGAT
rJMFF025N12+           GGGATGCTCGAGTTGGTACTAGTCCAGTTGTAAAGGTTGAAAAAGCTCATAATGCTGAT
                      ____________________________________________________________
consensus             TGGGATGCTCGAGTTGGTACTAGTCCAGTTGTAAAGGTTGAAAAAGCTCATAATGCTGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF032B09-           CTCCACTGTGTTGACTGGAATCCTCATGATGGCAACTTTATTATCACTGGATCTGCAGAT
rJMSF035G13+          CTCCACTGTGTTGACTGGAATCCTCATGATGGCAACTTTATTATCACTGGATCTGCAGAT
rJMFF024C16+          CTCCACTGTGTTGACTGGAATCCTCATGATGGCAACTTTATTATCACTGGATCTGCAGAT
rJMFF027E02+          CTCCACTGTGTTGACTGGAATCCTCATGATGGCAACTTTATTATCACTGGATCTGCAGAT
rJMSF043M18+          CTCCACTGTGTTGACTGGAATCCTCATGATGGCAACTTTATTATCACTGGATCTGCAGAT
rJMFF007A11+          CTCCACTGTGTTGACTGGAATCCTCATGATGGCAACTTTATTATCACTGGATCTGCAGAT
rJMSF040K15+          CTCCACTGTGTTGACTGGAATCCTCATGATGGCAACTTTATTATCACTGGATCTGCAGAT
rJMFF016M02+          CTCCACTGTGTTGACTGGAATCCTCATGATGGCAACTTTATTATCACTGGATCTGCAGAT
rJMFF025N12+          CTCCACTGTGTTGACTGGAATCCTCATGATGGCAACTTTATTATCACTGGATCTGCAGAT
rJMFF032B09+                                                             TCTGCAGAT
                      ____________________________________________________________
consensus             CTCCACTGTGTTGACTGGAATCCTCATGATGGCAACTTTATTATCACTGGATCTGCAGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF032B09-           AATTCTGTCCGCTTGTTTGATCGACGTAGTTTAACTTCGAATGGAGTTGGCTCACCAGTC
rJMSF035G13+          AATTCTGTCCGCTTGTTTGATCGACGTAGTTTAACTTCGAATGGAGTTGGCTCACCAGTC
rJMFF024C16+          AATTCTGTCCGCTTGTTTGATCGACGTAGTTTAACTTCGAATGGAGTTGGCTCACCAGTC
rJMFF041N20+                                       TTTAACTTCGAATGGAGTTGGCTCACCAGTC
rJMFF027E02+          AATTCTGTCCGCTTGTTTGATCGACGTAGTTTAACTTCGAATGGAGTTGGCTCACCAGTC
rJMSF043M18+          AATTCTGTCCGCTTGTTTGATCGACGTAGTTTAACTTCGAATGGAGTTGGCTCACCAGTC
rJMFF007A11+          AATTCTGTCCGCTTGTTTGATCGACGTAGTTTAACTTCGAATGGAGTTGGCTCACCAGTC
rJMSF040K15+          AATTCTGTCCGCTTGTTTGATCGACGTAGTTTAACTTCGAATGGAGTTGGCTCACCAGTC
rJMFF016M02+          AATTCTGTCCGCTTGTTTGATCGACGTAGTTTAACTTCGAATGGAGTTGGCTCACCAGTC
rJMFF025N12+          AATTCTGTCCGCTTGTTTGATCGACGTAGTTTAACTTCGAATGGAGTTGGCTCACCAGTC
rJMFF032B09+          AATTCTGTCCGCTTGTTTGATCGACGTAGTTTAACTTCGAATGGAGTTGGCTCACCAGTC
                      ____________________________________________________________
consensus             AATTCTGTCCGCTTGTTTGATCGACGTAGTTTAACTTCGAATGGAGTTGGCTCACCAGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF032B09-           CATATCTTTGAAAATCACAAAGCAGCAGTTCTTTGTGTGCAGTGGTGTCCAGACAGGTCC
rJMSF035G13+          CATATCTTTGAAAATCACAAAGCAGCAGTTCTTTGTGTGCAGTGGTGTCCAGACAGGTCC
rJMFF024C16+          CATATCTTTGAAAATCACAAAGCAGCAGTTCTTTGTGTGCAGTGGTGTCCAGACAGGTCC
rJMFF041N20+          CATATCTTTGAAAATCACAAAGCAGCAGTTCTTTGTGTGCAGTGGTGTCCAGACAGGTCC
rJMFF027E02+          CATATCTTTGAAAATCACAAAGCAGCAGTTCTTTGTGTGCAGTGGTGTCCAGACAGGTCC
rJMSF043M18+          CATATCTTTGAAAATCACAAAGCAGCAGTTCTTTGTGTGCAGTGGTGTCCAGACAGGTCC
rJMFF007A11+          CATATCTTTGAAAATCACAAAGCAGCAGTTCTTTGTGTGCAGTGGTGTCCAGACAGGTCC
rJMSF040K15+          CATATCTTTGAAAATCACAAAGCAGCAGTTCTTTGTGTGCAGTGGTGTCCAGACAGGTCC
rJMFF016M02+          CATATCTTTGAAAATCACAAAGCAGCAGTTCTTTGTGTGCAGTGGTGTCCAGACAGGTCC
rJMFF025N12+          CATATCTTTGAAAATCACAAAGCAGCAGTTCTTTGTGTGCAGTGGTGTCCAGACAGGTCC
rJMFF032B09+          CATATCTTTGAAAATCACAAAGCAGCAGTTCTTTGTGTGCAGTGGTGTCCAGACAGGTCC
                      ____________________________________________________________
consensus             CATATCTTTGAAAATCACAAAGCAGCAGTTCTTTGTGTGCAGTGGTGTCCAGACAGGTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF032B09-           TCTGTATTTGGGAGTACTGCAGAGGATGGTCGTTTGAATATTTGGGATTACGATAAGGTT
rJMSF035G13+          TCTGTATTTGGGAGTACTGCAGAGGATGGTCGTTTGAATATTTGGGATTACGATAAGGTT
rJMFF024C16+          TCTGTATTTGGGAGTACTGCAGAGGATGGTCGTTTGAATATTTGGGATTACGATAAGGTT
rJMFF041N20+          TCTGTATTTGGGAGTACTGCAGAGGATGGTCGTTTGAATATTTGGGATTACGATAAGGTT
JMFN039D23-                                          GTTTGAATATTTGGGATTACGATAAGGTT
rJMFF027E02+          TCTGTATTTGGGAGTACTGCAGAGGATGGTCGTTTGAATATTTGGGATTACGATAAGGTT
rJMSF043M18+          TCTGTATTTGGGAGTACTGCAGAGGATGGTCGTTTGAATATTTGGGATTACGATAAGGTT
rJMFF007A11+          TCTGTATTTGGGAGTACTGCAGAGGATGGTCGTTTGAATATTTGGGATTACGATAAGGTT
rJMSF040K15+          TCTGTATTTGGGAGTACTGCAGAGGATGGTCGTTTGAATATTTGGGATTACGATAAGGTT
rJMFF016M02+          TCTGTATTTGGGAGTACTGCAGAGGATGGTCGTTTGAATATTTGGGATTACGATAAGGTT
rJMFF025N12+          TCTGTATTTGGGAGTACTGCAGAGGATGGTCGTTTGAATATTTGGGATTACGATAAGGTT
rJMFF032B09+          TCTGTATTTGGGAGTACTGCAGAGGATGGTCGTTTGAATATTTGGGATTACGATAAGGTT
rJMFF042N08+                         ACTGCAGAGGATGGTCGTTTGAATATTTGGGATTACGATAAGGTT
                      ____________________________________________________________
consensus             TCTGTATTTGGGAGTACTGCAGAGGATGGTCGTTTGAATATTTGGGATTACGATAAGGTT
 
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JMFF032B09-           GGTGTGAAGGACAATGAGACACCTGCTCCAGGTTTATTTTTCCAGCATGCTGGGCACAGG
rJMSF035G13+          GGTGAGAAGGACAATGAGACACCTGCTCCAGGTTTATTTTTCCAGCATGCTGGGCACAGG
rJMFF024C16+          GGTGAGAAGGACAATGAGACACCTGCTCCAGGTTTATTTTTCCAGCATGCTGGGCACAGG
rJMFF041N20+          GGTGAGAAGGACAATGAGACACCTGCTCCAGGTTTATTTTTCCAGCATGCTGGGCACAGG
JMFN039D23-           GGTGAGAAGGACAATGAGACACCTGCTCCAGGTTTATTTTTCCAGCATGCTGGGCACAGG
rJMFF027E02+          GGTGAGAAGGACAATGAGACACCTGCTCCAGGTTTATTTTTCCAGCATGCTGGGCACAGG
rJMSF043M18+          GGTGAGAAGGACAATGAGACACCTGCTCCAGGTTTATTTTTCCAGCATGCTGGGCACAGG
rJMFF007A11+          GGTGAGAAGGACAATGAGACACCTGCTCCAGGTTTATTTTTCCAGCATGCTGGGCACAGG
rJMSF040K15+          GGTGAGAAGGACAATGAGACACCTGCTCCAGGTTTATTTTTCCAGCATGCTGGGCACAGG
rJMFF016M02+          GGTGAGAAGGACAATGAGACACCTGCTCCAGGTTTATTTTTCCAGCATGCTGGGCACAGG
rJMFF025N12+          GGTGAGAAGGACAATGAGACACCTGCTCCAGGTTTATTTTTCCAGCATGCTGGGCACAGG
rJMFF032B09+          GGTGTGAAGGACAATGAGACACCTGCTCCAGGTTTATTTTTCCAGCATGCTGGGCACAGG
rJMFF042N08+          GGTGAGAAGGACAATGAGACACCTGCTCCAGGTTTATTTTTCCAGCATGCTGGGCACAGG
                      ____________________________________________________________
consensus             GGTGAGAAGGACAATGAGACACCTGCTCCAGGTTTATTTTTCCAGCATGCTGGGCACAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF032B09-           GATAAAATTGTTGACTTCCACTGGAATGTGGCTGATCCATGGACAATTGTAAGTGTATCT
rJMSF035G13+          GATAAAATTGTTGACTTCCACTGGAATGTGGCTGATCCATGGACAATTGTAAGTGTATCT
rJMFF024C16+          GATAAAATTGTTGACTTCCACTGGAATGTGGCTGATCCATGGACAATTGTAAGTGTATCT
rJMFF041N20+          GATAAAATTGTTGACTTCCACTGGAATGTGGCTGATCCATGGACAATTGTAAGTGTATCT
JMFN039D23-           GATAAAATTGTTGACTTCCACTGGAATGTGGCTGATCCATGGACAATTGTAAGTGTATCT
rJMFF027E02+          GATAAAATTGTTGACTTCCACTGGAATGTGGCTGATCCATGGACAATTGTAAGTGTATCT
rJMSF043M18+          GATAAAATTGTTGACTTCCACTGGAATGTGGCTGATCCATGGACAATTGTAAGTGTATCT
rJMFF007A11+          GATAAAATTGTTGACTTCCACTGGAATGTGGCTGATCCATGGACAATTGTAAGTGTATCT
rJMSF040K15+          GATAAAATTGTTGACTTCCACTGGAATGTGGCTGATCCATGGACAATTGTAAGTGTATCT
rJMFF016M02+          GATAAAATTGTTGACTTCCACTGGAATGTGGCTGATCCATGGACAATTGTAAGTGTATCT
rJMFF025N12+          GATAAAATTGTTGACTTCCACTGGAATGTGGCTGATCCATGGACAATTGTAAGTGTATCT
rJMFF032B09+          GATAAAATTGTTGACTTCCACTGGAATGTGGCTGATCCATGGACAATTGTAAGTGTATCT
rJMFF042N14+                 TTGTTGACTTCCACTGGAATGTGGCTGATCCATGGACAATTGTAAGTGTATCT
rJMFF049C24+               AATTGTTGACTTCCACTGGAATGTGGCTGATCCATGGACAATTGTAAGTGTATCT
rJMFF042N08+          GATAAAATTGTTGACTTCCACTGGAATGTGGCTGATCCATGGACAATTGTAAGTGTATCT
                      ____________________________________________________________
consensus             GATAAAATTGTTGACTTCCACTGGAATGTGGCTGATCCATGGACAATTGTAAGTGTATCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF032B09-           GATGACTGTGACTCCACAGGTGGAGGTGGTACACTACAGATATGGCGGATGTTGGATTTG
rJMSF035G13+          GATGACTGTGACTCCACAGGTGGAGGTGGTACACTACAGATATGGCGGATGTTGGATTTG
rJMFF024C16+          GATGACTGTGACTCCACAGGTGGAGGTGGTACACTACAGATATGGCGGATGTTGGATTTG
rJMFF041N20+          GATGACTGTGACTCCACAGGTGGAGGTGGTACACTACAGATATGGCGGATGTTGGATTTG
JMFN039D23-           GATGACTGTGACTCCACAGGTGGAGGTGGTACACTACAGATATGGCGGATGTTGGATTTG
rJMFF027E02+          GATGACTGTGACTCCACAGGTGGAGGTGGTACACTACAGATATGGCGGATGTTGGATTTG
rJMSF043M18+          GATGACTGTGACTCCACAGGTGGAGGTGGTACACTACAGATATGGCGGATGTTGGATTTG
rJMFF007A11+          GATGACTGTGACTCCACAGGTGGAGGTGGTACACTACAGATATGGCGGATGTTGGATTTG
rJMSF040K15+          GATGACTGTGACTCCACAGGTGGAGGTGGTACACTACAGATATGGCGGATGTTGGATTTG
rJMFF016M02+          GATGACTGTGACTCCACAGGTGGAGGTGGTACACTACAGATATGGCGGATGTTGGATTTG
rJMFF025N12+          GATGACTGTGACTCCACAGGTGGAGGTGGTACACTACAGATATGGCGGATGTTGGATTTG
rJMFF032B09+          GATGACTGTGACTCCACAGGTGGAGGTGGTACACTACAGATATGGCGGATGTTGGATTTG
rJMFF042N14+          GATGACTGTGACTCCACAGGTGGAGGTGGTACACTACAGATATGGCGGATGTTGGATTTG
rJMFF049C24+          GATGACTGTGACTCCCCAGGTGGAGGTGGTACACTACAGATATGGCGGATGTTGGATTTG
rJMFF042N08+          GATGACTGTGACTCCACAGGTGGAGGTGGTACACTACAGATATGGCGGATGTTGGATTTG
                      ____________________________________________________________
consensus             GATGACTGTGACTCCACAGGTGGAGGTGGTACACTACAGATATGGCGGATGTTGGATTTG
 
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JMFF032B09-           CTGTATCGTCCTGAAGAGGAGGCTCTGGCCGAGCTTCAAAAATT                
rJMSF035G13+          CTGTATCGTCCTGAAGAGGAGGCTCTGGCCGAGCTTCAAAAATTCAAAGACCATGTAAGC
rJMFF024C16+          CTGTATCGTCCTGAAGAGGAGGCTCTGGCCGAGCTTCAAAAATTCAAAGACCATGTAAGC
rJMFF041N20+          CTGTATCGTCCTGAAGAGGAGGCTCTGGCCGAGCTTCAAAAATTCAAAGACCATGTAAGC
JMFN039D23-           CTGTATCGTCCTGAAGAGGAGGCTCTGGCCGAGCTTCAAAAATTCAAAGACCATGTAAGC
rJMFF027E02+          CTGTATCGTCCTGAAGAGGAGGCTCTGGCCGAGCTTCAAAAATTCAAAGACCATGTAAGC
rJMSF043M18+          CTGTATCGTCCTGAAGAGGAGGCTCTGGCCGAGCTTCAAAAATTCAAAGACCATGTAAGC
rJMFF007A11+          CTGTATCGTCCTGAAGAGGAGGCTCTGGCCGAGCTTCAAAAATTCAAAGACCATGTAAGC
rJMSF040K15+          CTGTATCGTCCTGAAGAGGAGGCTCTGGCCGAGCTTCAAAAATTCAAAGACCATGTAAGC
rJMFF016M02+          CTGTATCGTCCTGAAGAGGAGGCTCTGGCCGAGCTTCAAAAATTCAAAGACCATGTAAGC
rJMFF025N12+          CTGTATCGTCCTGAAGAGGAGGCTCTGGCCGAGCTTCAAAAATTCAAAGACCATGTAAGC
rJMFF032B09+          CTGTATCGTCCTGAAGAGGAGGCTCTGGCCGAGCTTCAAAAATTCAAAGACCATGTAAGC
rJMFF042N14+          CTGTATCGTCCTGAAGAGGAGGCTCTGGCCGAGCTTCAAAAATTCAAAGACCATGTAAGC
rJMFF049C24+          CTGTATCGTCCTGAAGAGGAGGCTCTGGCCGAGCTTCAAAAATTCAAAGACCATGTAAGC
rJMFF042N08+          CTGTATCGTCCTGAAGAGGAGGCTCTGGCCGAGCTTCAAAAATTCAAAGACCATGTAAGC
                      ____________________________________________________________
consensus             CTGTATCGTCCTGAAGAGGAGGCTCTGGCCGAGCTTCAAAAATTCAAAGACCATGTAAGC
 
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rJMSF035G13+          AAGTGCGCTCCAAAATCTGATTCCTAAGTATTAAGTGCTTGTGTACTCATTACTCTGAAG
rJMFF024C16+          AAGTGCGCTCCAAAATCTGATTCCTAAGTATTAAGTGCTTGTGTACTCATTACTCTGAAG
rJMFF041N20+          AAGTGCGCTCCAAAATCTGATTCCTAAGTATTAAGTGCTTGTGTACTCATTACTCTGAAG
JMFN039D23-           AAGTGCGCTCCAAAATCTGATTCCTAAGTATTAAGTGCTTGTGTACTCATTACTCTGAAG
rJMFF027E02+          AAGTGCGCTCCAAAATCTGATTCCTAAGTATTAAGTGCTTGTGTACTCATTACTCTGAAG
rJMSF043M18+          AAGTGCGCTCCAAAATCTGATTCCTAAGTATTAAGTGCTTGTGTACTCATTACTCTGAAG
rJMFF007A11+          AAGTGCGCTCCAAAATCTGATTCCTAAGTATTAAGTGCTTGTGTACTCATTACTCTGAAG
rJMSF040K15+          AAGTGCGCTCCAAAATCTGATTCCTAAGTATTAAGTGCTTGTGTACTCATTACTCTGAAG
rJMFF016M02+          AAGTGCGCTCCAAAATCTGATTCCTAAGTATTAAGTGCTTGTGTACTCATTACTCTGAAG
rJMFF025N12+          AAGTGCGCTCCAAAATCTGATTCCTAAGTATTAAGTGCTTGTGTACTCATTACTCTGAAG
rJMFF032B09+          AAGTGCGCTCCAAAATCTGATTCCTAAGTATTAAGTGCTTGTGTACTCATTACTCTGAAG
rJMFF042N14+          AAGTGCGCTCCAAAATCTGATTCCTAAGTATTAAGTGCTTGTGTACTCATTACTCTGAAG
rJMFF049C24+          AAGTGCGCTCCAAAATCTGATTCCTAAGTATTAAGTGCTTGTGTACTCATTACTCTGAAG
rJMFF042N08+          AAGTGCGCTCCAAAATCTGATTCCTAAGTATTAAGTGCTTGTGTACTCATTACTCTGAAG
                      ____________________________________________________________
consensus             AAGTGCGCTCCAAAATCTGATTCCTAAGTATTAAGTGCTTGTGTACTCATTACTCTGAAG
 
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rJMSF035G13+          TATGAGTCTAGTAGTGTACCAATCCAAACATTGTGGGTGGGAACCCATTGTTAGGACTGT
rJMFF024C16+          TATGAGTCTAGTAGTGTACCAATCCAAACATTGTAGGTGGGAACCCATTGTTAGGACTGT
rJMFF041N20+          TATGAGTCTAGTAGTGTACCAATCCAAACATTGTAGGTGGGAACCCATTGTTAGGACTGT
JMFN039D23-           TATGAGTCTAGTAGTGTACCAATCCAAACATTGTAGGTGGGAACCCATTGTTAGGACTGT
rJMFF027E02+          TATGAGTCTAGTAGTGTACCAATCCAAACATTGTAGGTGGGAACCCATTGTTAGGACTGT
rJMSF043M18+          TATGAGTCTAGTAGTGTACCAATCCAAACATTGTAGGTGGGAACCCATTGTTAGGACTGT
rJMFF007A11+          TATGAGTCTAGTAGTGTACCAATCCAAACATTGTAGGTGGGAACCCATTGTTAGGACTGT
rJMSF040K15+          TATGAGTCTAGTAGTGTACCAATCCAAACATTGTAGGTGGGAACCCATTGTTAGGACTGT
rJMFF016M02+          TATGAGTCTAGTAGTGTACCAATCCAAACATTGTAGGTGGGAACCCATTGTTAGGACTGT
rJMFF025N12+          TATGAGTCTAGTAGTGTACCAATCCAAACATTGTAGGTGGGAACCCATTGTTAGGACTGT
rJMFF032B09+          TATGAGTCTAGTAGTGTACCAATCCAAACATTGTAGGTGGGAACCCATTGTTAGGACTGT
rJMFF042N14+          TATGAGTCTAGTAGTGTACCAATCCAAACATTGTAGGTGGGAACCCATTGTTAGGACTGT
rJMFF049C24+          TATGAGTCTAGTAGTGTACCAATCCAAACATTGTAGGTGGGAACCCATTGTTAGGACTGT
rJMFF042N08+          TATGAGTCTAGTAGTGTACCAATCCAAACATTGTAGGTGGGAACCCATTGTTAGGACTGT
                      ____________________________________________________________
consensus             TATGAGTCTAGTAGTGTACCAATCCAAACATTGTAGGTGGGAACCCATTGTTAGGACTGT
 
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rJMSF035G13+          CCCGTTAACTTTATAACCTTTTTGTGACTGAAGATATT                      
rJMFF024C16+          CCCGTTAACTTTATAACCTTTTTGTGACTGAAGATATTTGGAGCTGTGCTTGATTA    
rJMFF041N20+          CCCGTTAACTTTATAACCTTTTTGTGACTGAAGATATTTGGAGCTGTGCTTGATTATCCT
JMFN039D23-           CCCGTTAACTTTATAACCTTTTTGTGACTGAAGATATTTGGAGCTGTGCTTGATTATCCT
rJMFF027E02+          CCCGTTAACTTTATAACCTTTTTGTGACTGAAGATATTTGGAGCTGTGCTTGATTATCCT
rJMSF043M18+          CCCGTTAACTTTATAACCTTTTTGTGACTGAAGATATTTGGAGCTGTGCTTGATTATCCT
rJMFF007A11+          CCCGTTAACTTTATAACCTTTTTGTGACTGAAGATATTTGGAGCTGTGCTTGATTATCCT
rJMSF040K15+          CCCGTTAACTTTATAACCTTTTTGTGACTGAAGATATTTGGAGCTGTGCTTGATTATCCT
rJMFF016M02+          CCCGTTAACTTTATAACCTTTTTGTGACTGAAGATATTTGGAGCTGTGCTTGATTATCCT
rJMFF025N12+          CCCGTTAACTTTATAACCTTTTTGTGACTGAAGATATTTGGAGCTGTGCTTGATTATCCT
rJMFF032B09+          CCCGTTAACTTTATAACCTTTTTGTGACTGAAGATATTTGGAGCTGTGCTTGATTATCCT
rJMFF042N14+          CCCGTTAACTTTATAACCTTTTTGTGACTGAAGATATTTGGAGCTGTGCTTGATTATCCT
rJMFF049C24+          CCCGTTAACTTTATAACCTTTTTGTGACTGAAGATATTTGGAGCTGTGCTTGATTATCCT
rJMFF042N08+          CCCGTTAACTTTATAACCTTTTTGTGACTGAAGATATTTGGAGCTGTGCTTGATTATCCT
                      ____________________________________________________________
consensus             CCCGTTAACTTTATAACCTTTTTGTGACTGAAGATATTTGGAGCTGTGCTTGATTATCCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF041N20+          ATTTAAC--AGATTGTTTTGTTCCT                                   
JMFN039D23-           ATTTAAC--AGATTGTTTTGTTCCT                                   
rJMFF027E02+          ATTTAAC--AGATTGTTTTGTTCCTAATGCG                             
rJMSF043M18+          ATTTAAC--AGATTGTTT                                          
rJMFF007A11+          ATTTAAC--AGATTGTTTTGTTCCTAATGCGTA                           
rJMSF040K15+          ATTTAAACAAGATTGTTTTGTTCCTAATGCGTATGGAGTACCTACGTGAGTTTGAAGTCT
rJMFF016M02+          ATTTAAC--AGATTGTTTTGTTCCTAATGCGTATGGAGTACCTA-GTGAGTTTGAAGTCT
rJMFF025N12+          ATTTAAC--AGATTGTTTTGTTCCTAATGCGTATGGAGTACCTA-GTGAGTTTGAAGTCT
rJMFF032B09+          ATTTAAC--AGATTGTTTTGTTCCTAATGCGTATGGAGTACCTA-GTGAGTTTGAAGTCT
rJMFF042N14+          ATTTAAC--AGATTGTTTTGTTCCTAATGCGTATGGAGTACCTA-GTGAGTTTGAAGTCT
rJMFF049C24+          ATTTAAC--AGATTGTTTTGTTCCTAATGCGTATGGAGTCCCTA-GTGAGTTTGAAGTCT
rJMFF042N08+          ATTTAAC--AGATTGTTTTGTTCCTAATGCGTATGGAGTACCTA-GTGAGTTTGAAGTCT
                      ____________________________________________________________
consensus             ATTTAAC--AGATTGTTTTGTTCCTAATGCGTATGGAGTACCTA-GTGAGTTTGAAGTCT
 
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rJMSF040K15+          ATGTTGTATCC                                                 
rJMFF016M02+          ATGTTGTATCCTAGACCTTGATACATGTTTATTTTAGTAT                    
rJMFF025N12+          ATGTTGTATCCTAGACCTTGATACATGTTTATTTTAGTATA                   
rJMFF032B09+          ATGTTGTATCCTAGACCTTGATACATGTTTATTTTAGTATAT                  
rJMFF042N14+          ATGTTGTATCCTAGACCTTGATACATGTTTATTTTAGTATATTGCACGTTCATTTT    
rJMFF049C24+          ATGTTGTATCCTAGACCTTGATACATGTTTATTTTAGTATAT                  
rJMFF042N08+          ATGTTGTATCCTAGACCTTGATACATGTTTATTTTAGTATATTGCACGTTCATTTTAACC
                      ____________________________________________________________
consensus             ATGTTGTATCCTAGACCTTGATACATGTTTATTTTAGTATATTGCACGTTCATTTTAACC