Contig 005499:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF002M14Sequence673001554 (6)ref|XP_011075125.1|2e-92PREDICTED: DNA polymerase delta small subunit [Sesamum indicum]739005499 (6)ref|XP_009766466.1|4e-110PREDICTED: DNA polymerase delta small subunit isoform X1 [Nicotiana sylvestris]
JMFF026L22Sequence520001554 (6)ref|XP_011075125.1|6e-93PREDICTED: DNA polymerase delta small subunit [Sesamum indicum]742005499 (6)ref|XP_002279533.2|1e-123PREDICTED: DNA polymerase delta small subunit isoform X2 [Vitis vinifera]
JMFF030I12Sequence276001554 (6)ref|XP_009618766.1|2e-38PREDICTED: DNA polymerase delta small subunit isoform X3 [Nicotiana tomentosifo626005499 (6)ref|XP_009766466.1|1e-96PREDICTED: DNA polymerase delta small subunit isoform X1 [Nicotiana sylvestris]
JMFF038O17Sequence571001554 (6)ref|XP_009618766.1|3e-100PREDICTED: DNA polymerase delta small subunit isoform X3 [Nicotiana tomentosifo697005499 (6)ref|XP_009766466.1|1e-84PREDICTED: DNA polymerase delta small subunit isoform X1 [Nicotiana sylvestris]
JMFF042J02Sequence643001554 (6)ref|XP_011075125.1|3e-115PREDICTED: DNA polymerase delta small subunit [Sesamum indicum]610005499 (6)ref|XP_002279533.2|4e-69PREDICTED: DNA polymerase delta small subunit isoform X2 [Vitis vinifera]
JMSF012C24Sequence211000235 (181)dbj|BAA11310.1|5e-17chlorophyl a/b binding protein [Ipomoea nil]676005499 (6)ref|XP_002279533.2|4e-117PREDICTED: DNA polymerase delta small subunit isoform X2 [Vitis vinifera]

Alignment

This contig is upended


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rJMSF012C24+                                      CTAAATTATCTGAGCCAATCAAAGAACTGGAT
rJMFF026L22+            TCAGAATTTGGNTTCGAAGGACCAGTCTAAATTATCTGAGCCAATCAAAGAACTGGAT
                      ____________________________________________________________
consensus               TCAGAATTTGGNTTCGAAGGACCAGTCTAAATTATCTGAGCCAATCAAAGAACTGGAT
 
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rJMSF012C24+          ATCTTGCTGACTCAGATTGCAGCTGGTATACCTTTGGATATCATGCCTGGACCTGGTGAT
rJMFF026L22+          ATCTTGCTGACTCAGATTGCAGCTGGTATACCTTTGGATATCATGCCTGGACCTGGTGAT
rJMFF002M14+             TTGCTGACTCAGATTGCAGCTGGTATACCTTTGGATATCATGCCTGGACCTGGTGAT
rJMFF038O17+                                                                    AT
                      ____________________________________________________________
consensus             ATCTTGCTGACTCAGATTGCAGCTGGTATACCTTTGGATATCATGCCTGGACCTGGTGAT
 
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rJMSF012C24+          CCTGCGAATTTCGCCATGCCGCAACAGCCCCTGCATAGATGCCTTTT-CCCTGGGTCATC
rJMFF026L22+          CCTGCGAATTTCGCCATGCCGCAACAGCCCCTGCATAGATGCCTTTT-CCCTGGGTCATC
rJMFF030I12+                AATTTCGCCATGCCGCAACAGCCCCTGCATAGATGCCTTTT-CCCTGGGTCATC
rJMFF002M14+          CCTGCGAATTTCGCCATGCCGCAACAGCCCCTGCATAGATGCCTTTT-CCCTGGGTCATC
rJMFF038O17+          CCTGCGAATTTCGCCATGCCGCAACAGCCCCTGCATAGATGCCTTTTCCCCTGGGTCATC
                      ____________________________________________________________
consensus             CCTGCGAATTTCGCCATGCCGCAACAGCCCCTGCATAGATGCCTTTT-CCCTGGGTCATC
 
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rJMSF012C24+          AACATATAATACTTTCAGATCTTGTACTAATCCTCATTGCTTTGAGCTTGACAACCTTAG
rJMFF026L22+          AACATATAATACTTTCAGATCTTGTACTAATCCTCATTGCTTTGAGCTTGACAACCTTAG
rJMFF030I12+          AACATATAATACTTTCAGATCTTGTACTAATCCTCATTGCTTTGAGCTTGACAACCTTAG
rJMFF002M14+          AACATATAATACTTTCAGATCTTGTACTAATCCTCATTGCTTTGAGCTTGACAACCTTAG
rJMFF038O17+          AACATATAATACTTTCAGATCTTGTACTAATCCTCATTGCTTTGAGCTTGACAACCTTAG
rJMFF042J02+                                                            ACAACCTTAG
                      ____________________________________________________________
consensus             AACATATAATACTTTCAGATCTTGTACTAATCCTCATTGCTTTGAGCTTGACAACCTTAG
 
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rJMSF012C24+          ATTTCTGGGAACTTCAGGTCAGAACATAGATGACCTTGGGAAGTATTCAGAAGCAAAAGA
rJMFF026L22+          ATTTCTGGGAACTTCAGGTCAGAACATAGATGACCTTGGGAAGTATTCAGAAGCAAAAGA
rJMFF030I12+          ATTTCTGGGAACTTCAGGTCAGAACATAGATGACCTTGGGAAGTATTCAGAAGCAAAAGA
rJMFF002M14+          ATTTCTGGGAACTTCAGGTCAGAACATAGATGACCTTGGGAAGTATTCAGAAGCAAAAGA
rJMFF038O17+          ATTTCTGGGAACTTCAGGTCAGAACATAGATGACCTTGGGAAGTATTCAGAAGCAAAAGA
rJMFF042J02+          ATTTCTGGGAACTTCAGGTCAGAACATAGATGACCTTGGGAAGTATTCAGAAGCAAAAGA
                      ____________________________________________________________
consensus             ATTTCTGGGAACTTCAGGTCAGAACATAGATGACCTTGGGAAGTATTCAGAAGCAAAAGA
 
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rJMSF012C24+          TAAACNTGAATTCATGGAGCGAACATTGAGATGGAGGCATCTGGCACCCACTGCACCAAA
rJMFF026L22+          TAAACTTGAATTCATGGAGCGAACATTGAGATGGAGGCATCTGGCACCCACTGCACCAAA
rJMFF030I12+          TAAACTTGAATTCATGGAGCGAACATTGAGATGGAGGCATCTGGCACCCACTGCACCAAA
rJMFF002M14+          TAAACTTGAATTCATGGAGCGAACATTGAGATGGAGGCATCTGGCACCCACTGCACCAAA
rJMFF038O17+          TAAACTTGAATTCATGGAGCGAACATTGAGATGGAGGCATCTGGCACCCACTGCACCAAA
rJMFF042J02+          TAAACTTGAATTCATGGAGCGAACATTGAGATGGAGGCATCTGGCACCCACTGCACCAAA
                      ____________________________________________________________
consensus             TAAACTTGAATTCATGGAGCGAACATTGAGATGGAGGCATCTGGCACCCACTGCACCAAA
 
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rJMSF012C24+          TACCCTTGGGTGCTATCCCTACACCGATAGGGATCCTTTCTTCGTCGAATCTTGTCCCCA
rJMFF026L22+          TACCCTTGGGTGCTATCCCTACACCGATAGGGATCCTTTCTTCGTCGAATCTTGTCCCCA
rJMFF030I12+          TACCCTTGGGTGCTATCCCTACACCGATAGGGATCCTTTCTTCGTCGAATCTTGTCCCCA
rJMFF002M14+          TACCCTTGGGTGCTATCCCTACACCGATAGGGATCCTTTCTTCGTCGAATCTTGTCCCCA
rJMFF038O17+          TACCCTTGGGTGCTATCCCTACACCGATAGGGATCCTTTCTTCGTCGAATCTTGTCCCCA
rJMFF042J02+          TACCCTTGGGTGCTATCCCTACACCGATAGGGATCCTTTCTTCGTCGAATCTTGTCCCCA
                      ____________________________________________________________
consensus             TACCCTTGGGTGCTATCCCTACACCGATAGGGATCCTTTCTTCGTCGAATCTTGTCCCCA
 
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rJMSF012C24+          TGTTTATTTTGTGGGCAATCAAGATAAGTACGAGACTCGCTTGATCAAAGGGCCAGAGGG
rJMFF026L22+          TGTTTATTTTGTGGGCAATCAAGATAAGTACGAGACTCGCTTGATCAAAGGGCCAGAGGG
rJMFF030I12+          TGTTTATTTTGTGGGCAATCAAGATAAGTACGAGACTCGCTTGATCAAAGGGCCAGAGGG
rJMFF002M14+          TGTTTATTTTGTGGGCAATCAAGATAAGTACGAGACTCGCTTGATCAAAGGGCCAGAGGG
rJMFF038O17+          TGTTTATTTTGTGGGCAATCAAGATAAGTACGAGACTCGCTTGATCAAAGGGCCAGAGGG
rJMFF042J02+          TGTTTATTTTGTGGGCAATCAAGATAAGTACGAGACTCGCTTGATCAAAGGGCCAGAGGG
                      ____________________________________________________________
consensus             TGTTTATTTTGTGGGCAATCAAGATAAGTACGAGACTCGCTTGATCAAAGGGCCAGAGGG
 
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rJMSF012C24+          GCAGGCGGTAAGACTCATTTGCATTCCTAGATTTGCCGAGACAGGTGTTGCTGTGGTGTT
rJMFF026L22+          GCAGGCGGTAAGACTCATTTGCATTCCTAGATTTGCCGAGACAGGTGTTGCTGTGGTGTT
rJMFF030I12+          GCAGGCGGTAAGACTCATTTGCATTCCTAGATTTGCCGAGACAGGTGTTGCTGTGGTGTT
rJMFF002M14+          GCAGGCGGTAAGACTCATTTGCATTCCTAGATTTGCCGAGACAGGTGTTGCTGTGGTGTT
rJMFF038O17+          GCAGGCGGTAAGACTCATTTGCATTCCTAGATTTGCCGAGACAGGTGTTGCTGTGGTGTT
rJMFF042J02+          GCAGGCGGTAAGACTCATTTGCATTCCTAGATTTGCCGAGACAGGTGTTGCTGTGGTGTT
                      ____________________________________________________________
consensus             GCAGGCGGTAAGACTCATTTGCATTCCTAGATTTGCCGAGACAGGTGTTGCTGTGGTGTT
 
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rJMSF012C24+          AAACATGAGAAATCTTGAATGCTACACTCTTAGCATTGGTGGTCAAATAAACTTATAACC
rJMFF026L22+          AAACATGAGAAATCTTGAATGCTACACTCTTAGCATTGGTGGTCAAATAAACTTATAACC
rJMFF030I12+          AAACATGAGAAATCTTGAATGCTACACTCTTAGCATTGGTGGTCAAATAAACTTATAACC
rJMFF002M14+          AAACATGAGAAATCTTGAATGCTACACTCTTAGCATTGGTGGTCAAATAAACTTATAACC
rJMFF038O17+          AAACATGAGAAATCTTGAATGCTACACTCTTAGCATTGGTGGTCAAATAAACTTATAACC
rJMFF042J02+          AAACATGAGAAATCTTGAATGCTACACTCTTAGCATTGGTGGTCAAATAAACTTATAACC
                      ____________________________________________________________
consensus             AAACATGAGAAATCTTGAATGCTACACTCTTAGCATTGGTGGTCAAATAAACTTATAACC
 
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rJMSF012C24+          CACAGCTGGGATGAGCAAGTACCCTGGCCTGTAGTTTCTTGTGAGTTTTAATTTCATTCT
rJMFF026L22+          CACAGCTGGGATGAGCAAGTACCCTGGCCTGTAGTTTCTTGTGAGTTTTAATTTCATTCT
rJMFF030I12+          CACAGCTGGGATGAGCAAGTACCCTGGCCTGTAGTTTCTTGTGAGTTTTAATTTCATTCT
rJMFF002M14+          CACAGCTGGGATGAGCAAGTACCCTGGCCTGTAGTTTCTTGTGAGTTTTAATATCATTCT
rJMFF038O17+          CACAGCTGGGATGAGCAAGTACCCTGGCCTGTAGTTTCTTGTGAGTTTTAATATCATTCT
rJMFF042J02+          CACAGCTGGGATGAGCAAGTACCCTGGCCTGTAGTTTCTTGTGAGTTTTAATATCATTCT
                      ____________________________________________________________
consensus             CACAGCTGGGATGAGCAAGTACCCTGGCCTGTAGTTTCTTGTGAGTTTTAATTTCATTCT
 
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rJMSF012C24+          CTACTGTTCTACAGACGTTAAATATTAGGTTACAATTGTATTTAG               
rJMFF026L22+          CTACTGTTCTACAGACGTTAAATATTAGGTTACAATTGTATTTAGTGTATTCATGAATGG
rJMFF030I12+          CTACTGTTCTACAGACGTTAAATATTAGGTTACAATTGTATTTAGTGTATTCATGAATGG
rJMFF002M14+          CTACTGTTCTACAGACGTTAAATATTAGGTTACAATTGTATTTAGTGTATTCATGAATGG
rJMFF038O17+          CTACTGTTCTACAGACGTTAAATATTAGGTTACAATTGTATTTAGTGTATTCATGAATGG
rJMFF042J02+          CTACTGTTCTACAGACGTTAAATATTAGGTTACAATTGTATTTAGTGTATTCATGAATGG
                      ____________________________________________________________
consensus             CTACTGTTCTACAGACGTTAAATATTAGGTTACAATTGTATTTAGTGTATTCATGAATGG
 
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rJMFF026L22+          TTTGTCTTTCTGGTGCCATGAAACA                                   
rJMFF030I12+          TTTGTCTTTCTGGTGCCATGAAACACATTCCAC                           
rJMFF002M14+          TTTGTCTTTCTGGTGCCATGAAACACATTCCACTGTGTTTTTATATGCACACCCCAGCAA
rJMFF038O17+          TTTGTCTTTCTGGTGCCATGAAACACATTCCACTGTGTTTTTATATGCACACCCCAGCAA
rJMFF042J02+          TTTGTCTTTCTGGTGCCATGAAACACATTCCACTGTGTTTTTATATGCACACCCCAGCAA
                      ____________________________________________________________
consensus             TTTGTCTTTCTGGTGCCATGAAACACATTCCACTGTGTTTTTATATGCACACCCCAGCAA
 
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rJMFF002M14+          ATGTTCATTACAATTGTGAGTAA                                     
rJMFF038O17+          ATGTTCATTACAATTGTGAGTAATGTTTGTAAACT                         
rJMFF042J02+          ATGTTCATTACAATTGTGAGTAATGTTTGTAAACTTAACATGGATCTTTTTTCTTTCAAT
                      ____________________________________________________________
consensus             ATGTTCATTACAATTGTGAGTAATGTTTGTAAACTTAACATGGATCTTTTTTCTTTCAAT