| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF003J03 | Sequence | 567 | 005014 (4) | ref|XP_009800064.1| | 9e-63 | PREDICTED: [Pyruvate dehydrogenase (acetyl-transferring)] kinase, mitochondrial | 698 | 005496 (5) | ref|XP_009623160.1| | 3e-92 | PREDICTED: [Pyruvate dehydrogenase (acetyl-transferring)] kinase, mitochondrial |
| JMFF007L11 | Sequence | 627 | 005014 (4) | ref|XP_009800064.1| | 6e-80 | PREDICTED: [Pyruvate dehydrogenase (acetyl-transferring)] kinase, mitochondrial | 785 | 005496 (5) | ref|XP_009623160.1| | 9e-132 | PREDICTED: [Pyruvate dehydrogenase (acetyl-transferring)] kinase, mitochondrial |
| JMFF042B05 | Sequence | 634 | 005014 (4) | ref|XP_009800064.1| | 3e-78 | PREDICTED: [Pyruvate dehydrogenase (acetyl-transferring)] kinase, mitochondrial | 644 | 005496 (5) | ref|XP_009800064.1| | 1e-89 | PREDICTED: [Pyruvate dehydrogenase (acetyl-transferring)] kinase, mitochondrial |
| JMFS027A08 | Sequence | 213 | 005496 (5) | ||||||||
| JMSF013M19 | Sequence | 456 | 005014 (4) | ref|XP_009623160.1| | 2e-29 | PREDICTED: [Pyruvate dehydrogenase (acetyl-transferring)] kinase, mitochondrial | 741 | 005496 (5) | ref|XP_009623160.1| | 2e-125 | PREDICTED: [Pyruvate dehydrogenase (acetyl-transferring)] kinase, mitochondrial |
This contig is upended
. : . : . : . : . : . :
rJMSF013M19+ TGCATGATC
rJMFF007L11+ GAATGCTTATTGGGCAGCATGTGNCCTTGCATGATC
____________________________________________________________
consensus GAATGCTTATTGGGCAGCATGTGNCCTTGCATGATC
. : . : . : . : . : . :
rJMSF013M19+ CCAATCCTCTTCCTGACTGTATTGGGTATATACATACGAAAATGTCACCAGTTGAGGTTG
rJMFF003J03+ GACTGTATTGGGTATATACATACGAAAATGTCACCAGTTGAGGTTG
rJMFF007L11+ CCAATCCTCTTCCTGACTGTATTGGGTATATACATACGAAAATGTCACCAGTTGAGGTTG
____________________________________________________________
consensus CCAATCCTCTTCCTGACTGTATTGGGTATATACATACGAAAATGTCACCAGTTGAGGTTG
. : . : . : . : . : . :
rJMSF013M19+ CACGAAATGCCAGTGAAGATGCTCGTTGTGTTTGTTTCCGAGAGTATGGCAGTGCACCTG
rJMFF003J03+ CACGAAATGCCAGTGAAGATGCTCGTTGTGTTTGTTTCCGAGAGTATGGCAGTGCACCTG
rJMFF007L11+ CACGAAATGCCAGTGAAGATGCTCGTTGTGTTTGTTTCCGAGAGTATGGCAGTGCACCTG
____________________________________________________________
consensus CACGAAATGCCAGTGAAGATGCTCGTTGTGTTTGTTTCCGAGAGTATGGCAGTGCACCTG
. : . : . : . : . : . :
rJMSF013M19+ AAGTTAGCATTTATGGAGATCCCAATTTCACTTTCCCGTATGTGCCAACACATCTACAAT
rJMFF003J03+ AAGTTAGCATTTATGGAGATCCCAATTTCACTTTCCCGTATGTGCCAACACATCTACAAT
rJMFF007L11+ AAGTTAGCATTTATGGAGATCCCAATTTCACTTTCCCGTATGTGCCAACACATCTACAAT
rJMFF042B05+ AGATCCCAATTTCACTTTCCCGTATGTGCCAACACATCTACAAT
____________________________________________________________
consensus AAGTTAGCATTTATGGAGATCCCAATTTCACTTTCCCGTATGTGCCAACACATCTACAAT
. : . : . : . : . : . :
rJMSF013M19+ TGATGGTGTTTGAATTGGTTAAGAACTCCTTGCGTGCTGTTCAAGAGCGATACATGGATT
rJMFF003J03+ TGATGGTGTTTGAATTGGTTAAGAACTCCTTGCGTGCTGTTCAAGAGCGATACATGGATT
rJMFF007L11+ TGATGGTGTTTGAATTGGTTAAGAACTCCTTGCGTGCTGTTCAAGAGCGATACATGGATT
rJMFF042B05+ TGATGGTGTTTGAATTGGTTAAGAACTCCTTGCGTGCTGTTCAAGAGCGATACATGGATT
____________________________________________________________
consensus TGATGGTGTTTGAATTGGTTAAGAACTCCTTGCGTGCTGTTCAAGAGCGATACATGGATT
. : . : . : . : . : . :
rJMSF013M19+ CGGACAAGGTTGCACCTCCTGTTCGCTTAATAGTAGCTGATGGTTTGGAAGATGTTACGA
rJMFF003J03+ CGGACAAGGTTGCACCTCCTGTTCGCTTAATAGTAGCTGATGGTTTGGAAGATGTTACGA
rJMFF007L11+ CGGACAAGGTTGCACCTCCTGTTCGCTTAATAGTAGCTGATGGTTTGGAAGATGTTACGA
rJMFF042B05+ CGGACAAGGTTGCACCTCCTGTTCGCTTAATAGTAGCTGATGGTTTGGAAGATGTTACGA
____________________________________________________________
consensus CGGACAAGGTTGCACCTCCTGTTCGCTTAATAGTAGCTGATGGTTTGGAAGATGTTACGA
. : . : . : . : . : . :
rJMSF013M19+ TTAAGGTTTCTGATGAAGGTGGTGGAATACCAAGAAGTGGCCTTCCTAAAATCTTTACGT
rJMFF003J03+ TTAAGGTTTCTGATGAAGGTGGTGGAATACCAAGAAGTGGCCTTCC-AAAATCTTTACGT
rJMFF007L11+ TTAAGGTTTCTGATGAAGGTGGTGGAATACCAAGAAGTGGCCTTCCTAAAATCTTTACGT
rJMFF042B05+ TTAAGGTTTCTGATGAAGGTGGTGGAATACCAAGAAGTGGCCTTCCTAAAATCTTTACGT
____________________________________________________________
consensus TTAAGGTTTCTGATGAAGGTGGTGGAATACCAAGAAGTGGCCTTCCTAAAATCTTTACGT
. : . : . : . : . : . :
rJMSF013M19+ ATCTCTACAGCACTGCAAGAAACCCATTGGATGAGCTATCAGACCTCGGTGCTACTGAGC
rJMFF003J03+ ATCTCTACAGCACTGCAAGAAACCCATTGGATGAGCTATCAGACCTCGGTGCTACTGAGC
JMFS027A08- TCTACAGCACTGCAAGAAACCCATTGGATGAGCTATCAGACCTCGGTGCTACTGAGC
rJMFF007L11+ ATCTCTACAGCACTGCAAGAAACCCATTGGATGAGCTATCAGACCTCGGTGCTACTGAGC
rJMFF042B05+ ATCTCTACAGCACTGCAAGAAACCCATTGGATGAGCTATCAGACCTCGGTGCTACTGAGC
____________________________________________________________
consensus ATCTCTACAGCACTGCAAGAAACCCATTGGATGAGCTATCAGACCTCGGTGCTACTGAGC
. : . : . : . : . : . :
rJMSF013M19+ TGGCAACTGTGTCCCCGTTGGCTGGTTATGGGTATGGGCTGCCAATAAGTCGCTTGTATG
rJMFF003J03+ TGGCAACTGTGTCCCCGTTGGCTGGTTATGGGTATGGGCTGCCAATAAGTCGCTTGTATG
JMFS027A08- TGGCAACTGTGTCCC
rJMFF007L11+ TGGCAACTGTGTCCCCGTTGGCTGGTTATGGGTATGGGCTGCCAATAAGTCGCTTGTATG
rJMFF042B05+ TGGCAACTGTGTCCCCGTTGGCTGGTTATGGGTATGGGCTGCCAATAAGTCGCTTGTATG
____________________________________________________________
consensus TGGCAACTGTGTCCCCGTTGGCTGGTTATGGGTATGGGCTGCCAATAAGTCGCTTGTATG
. : . : . : . : . : . :
rJMSF013M19+ CTCGCTACTTTGGGGGAGACCTGCAAATTATCTCCATGGAAGGATATGGGACAGATGCTT
rJMFF003J03+ CTCGCTACTTTGGGGGAGACCTGCAAATTATCTCCATGGAAGGATATGGGACAGATGCTT
rJMFF007L11+ CTCGCTACTTTGGGGGAGACCTGCAAATTATCTCCATGGAAGGATATGGGACAGATGCTT
rJMFF042B05+ CTCGCTACTTTGGGGGAGACCTGCAAATTATCTCCATGGAAGGATATGGGACAGATGCTT
____________________________________________________________
consensus CTCGCTACTTTGGGGGAGACCTGCAAATTATCTCCATGGAAGGATATGGGACAGATGCTT
. : . : . : . : . : . :
rJMSF013M19+ ATCTTCACTTGTCAAGGCTTTGTGATTCACAGGAGCCATTGCCTTAAGAGTACTACTGCT
rJMFF003J03+ ATCTTCACTTGTCAAGGCTTTGTGATTCACAGGAGCCATTGCCTTAAGAGTACTACTGCT
rJMFF007L11+ ATCTTCACTTGTCAAGGCTTTGTGATTCACAGGAGCCATTGCCTTAAGAGTACTACTGCT
rJMFF042B05+ ATCTTCACTTGTCAAGGCTTTGTGATTCACAGGAGCCATTGCCTTAAGAGTACTACTGCT
____________________________________________________________
consensus ATCTTCACTTGTCAAGGCTTTGTGATTCACAGGAGCCATTGCCTTAAGAGTACTACTGCT
. : . : . : . : . : . :
rJMSF013M19+ GACACTGGGATTTTTAGCATAATTTAAGTGCTGTAAATATGTTATTTAAGACACCAAGTT
rJMFF003J03+ GACACTGGGATTTTTAGCATAATTTAAGTGCTGTAAATATGTTATTTAAGACACCAAGTT
rJMFF007L11+ GACACTGGGATTTTTAGCATAATTTAAGTGCTGTAAATATGTTATTTAAGACACCAAGTT
rJMFF042B05+ GACACTGGGATTTTTAGCATAATTTAAGTGCTGTAAATATGTTATTTAAGACACCAAGTT
____________________________________________________________
consensus GACACTGGGATTTTTAGCATAATTTAAGTGCTGTAAATATGTTATTTAAGACACCAAGTT
. : . : . : . : . : . :
rJMSF013M19+ GCAACCCCTTGTTCACATGGGAAACTCAAATGTTGTAATTGTCAATTTCTCA
rJMFF003J03+ GCAACCCCTTGTTCACATGGGAAACTCAAATGTTGTAATTGTCAATTTCTCAT
rJMFF007L11+ GCAACCCCTTGTTCACATGGGAAACTCAAATGTTGTAATTGTCAATTTCTCATTGTTGTA
rJMFF042B05+ GCAACCCCTTGTTCACATGGGAAACTCAAATGTTGTAATTGTCAATTTCTCATTGTTGTA
____________________________________________________________
consensus GCAACCCCTTGTTCACATGGGAAACTCAAATGTTGTAATTGTCAATTTCTCATTGTTGTA
. : . : . : . : . : . :
rJMFF007L11+ TGAATTGTTGCTTATATCCA
rJMFF042B05+ TGAATTGTTGCTTATATCCAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
____________________________________________________________
consensus TGAATTGTTGCTTATATCCAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG