| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF001G18 | Sequence | 594 | 005495 (15) | ref|XP_009589735.1| | 3e-81 | PREDICTED: cyclic nucleotide-gated ion channel 2 [Nicotiana tomentosiformis] | |||||
| JMFF002F02 | Sequence | 570 | 005878 (27) | emb|CDP02281.1| | 1e-38 | unnamed protein product [Coffea canephora] | 681 | 005495 (15) | ref|XP_009589735.1| | 5e-82 | PREDICTED: cyclic nucleotide-gated ion channel 2 [Nicotiana tomentosiformis] |
| JMFF009C10 | Sequence | 565 | 005878 (27) | emb|CDP02281.1| | 2e-54 | unnamed protein product [Coffea canephora] | 605 | 005495 (15) | ref|XP_009589735.1| | 2e-80 | PREDICTED: cyclic nucleotide-gated ion channel 2 [Nicotiana tomentosiformis] |
| JMFF013N06 | Sequence | 521 | 005878 (27) | emb|CDP02281.1| | 1e-45 | unnamed protein product [Coffea canephora] | 647 | 005495 (15) | ref|XP_009589735.1| | 4e-89 | PREDICTED: cyclic nucleotide-gated ion channel 2 [Nicotiana tomentosiformis] |
| JMFF019A18 | Sequence | 563 | 005878 (27) | emb|CDP02281.1| | 1e-54 | unnamed protein product [Coffea canephora] | 712 | 005495 (15) | ref|XP_009589735.1| | 1e-123 | PREDICTED: cyclic nucleotide-gated ion channel 2 [Nicotiana tomentosiformis] |
| JMFF042A18 | Sequence | 635 | 005878 (27) | ref|XP_006373346.1| | 7e-80 | hypothetical protein POPTR_0017s12550g [Populus trichocarpa] gb|ERP51143.1| hypo | 618 | 005495 (15) | ref|XP_009589735.1| | 2e-79 | PREDICTED: cyclic nucleotide-gated ion channel 2 [Nicotiana tomentosiformis] |
| JMFF042E16 | Sequence | 654 | 005878 (27) | ref|XP_006373346.1| | 3e-72 | hypothetical protein POPTR_0017s12550g [Populus trichocarpa] gb|ERP51143.1| hypo | 570 | 005495 (15) | ref|XP_009589735.1| | 8e-80 | PREDICTED: cyclic nucleotide-gated ion channel 2 [Nicotiana tomentosiformis] |
| JMFF045M22 | Sequence | 678 | 005878 (27) | ref|XP_006373346.1| | 2e-76 | hypothetical protein POPTR_0017s12550g [Populus trichocarpa] gb|ERP51143.1| hypo | 304 | 005495 (15) | ref|XP_007032653.1| | 1e-48 | Cyclic nucleotide-regulated ion channel family protein isoform 1 [Theobroma cac |
| JMSF021O16 | Sequence | 701 | 005878 (27) | ref|XP_006373346.1| | 2e-75 | hypothetical protein POPTR_0017s12550g [Populus trichocarpa] gb|ERP51143.1| hypo | 690 | 005495 (15) | ref|XP_009589735.1| | 3e-96 | PREDICTED: cyclic nucleotide-gated ion channel 2 [Nicotiana tomentosiformis] |
| JMSF023K18 | Sequence | 702 | 005878 (27) | ref|XP_006373346.1| | 2e-75 | hypothetical protein POPTR_0017s12550g [Populus trichocarpa] gb|ERP51143.1| hypo | 747 | 005495 (15) | ref|XP_009589735.1| | 2e-140 | PREDICTED: cyclic nucleotide-gated ion channel 2 [Nicotiana tomentosiformis] |
| JMSF031P04 | Sequence | 683 | 005878 (27) | ref|XP_006373346.1| | 7e-79 | hypothetical protein POPTR_0017s12550g [Populus trichocarpa] gb|ERP51143.1| hypo | 651 | 005495 (15) | ref|XP_009589735.1| | 2e-103 | PREDICTED: cyclic nucleotide-gated ion channel 2 [Nicotiana tomentosiformis] |
| JMSF034B11 | Sequence | 682 | 005878 (27) | ref|XP_009589735.1| | 5e-60 | PREDICTED: cyclic nucleotide-gated ion channel 2 [Nicotiana tomentosiformis] | 693 | 005495 (15) | ref|XP_009589735.1| | 5e-96 | PREDICTED: cyclic nucleotide-gated ion channel 2 [Nicotiana tomentosiformis] |
| JMSF034L02 | Sequence | 682 | 005878 (27) | ref|XP_007032653.1| | 1e-71 | Cyclic nucleotide-regulated ion channel family protein isoform 1 [Theobroma cac | 617 | 005495 (15) | ref|XP_009589735.1| | 7e-91 | PREDICTED: cyclic nucleotide-gated ion channel 2 [Nicotiana tomentosiformis] |
| JMSF036P08 | Sequence | 677 | 005878 (27) | ref|XP_006373346.1| | 7e-79 | hypothetical protein POPTR_0017s12550g [Populus trichocarpa] gb|ERP51143.1| hypo | 675 | 005495 (15) | ref|XP_009589735.1| | 4e-106 | PREDICTED: cyclic nucleotide-gated ion channel 2 [Nicotiana tomentosiformis] |
| JMSF041F23 | Sequence | 770 | 005878 (27) | ref|XP_006373346.1| | 1e-113 | hypothetical protein POPTR_0017s12550g [Populus trichocarpa] gb|ERP51143.1| hypo | 441 | 005495 (15) | ref|XP_009589735.1| | 2e-52 | PREDICTED: cyclic nucleotide-gated ion channel 2 [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
rJMSF023K18+ ATGGGCAGCCATGGGTGGGGAA
____________________________________________________________
consensus ATGGGCAGCCATGGGTGGGGAA
. : . : . : . : . : . :
rJMSF023K18+ GACGAGATGGAATTGATTAAAGACTTGCCGGAAGGGCTTCGACGAGACATTAAACGATTC
rJMFF019A18+ CTTCGACGAGACATTAAACGATTC
____________________________________________________________
consensus GACGAGATGGAATTGATTAAAGACTTGCCGGAAGGGCTTCGACGAGACATTAAACGATTC
. : . : . : . : . : . :
rJMSF023K18+ CTCTGCCTCGATCTCATCAAAAAGGTGCCTCTGTTCCACAGTTTGGACGATCTCATTCTT
rJMFF019A18+ NTCTGCCTCGATCTCATCAAAAAGGTGCNTCTGTTCCACAGTTTGGACGATCTCATTCTT
rJMSF021O16+ ACAGTTTGGACGATNTCATTCTT
rJMSF034B11+ ACAGTTTGGACGATCTCATTCTT
rJMSF031P04+ TT
rJMSF036P08+ ATTCTT
____________________________________________________________
consensus CTCTGCCTCGATCTCATCAAAAAGGTGCCTCTGTTCCACAGTTTGGACGATCTCATTCTT
. : . : . : . : . : . :
rJMSF023K18+ GACAACATCTGCGACCGCATTAAGCCGCTAGTCTTCTCCAAAGATGAGAAGATAATAAGA
rJMFF019A18+ GACAACATCTGCGACCGCATTAAGCCGCTAGTCTTCTCCAAAGATGAGAAGATAATAAGA
rJMSF021O16+ GACAACATNTGCGACCGCATTAAGCCGCTAGTCTTCTCCAAAGATGAGAAGATAATAAGA
rJMSF034B11+ GACAACATNTGCGACCGCATTAAGCCGCTAGTNTTCTCCAAAGATGAGAAGATAATAAGA
rJMSF031P04+ GACAACATNTGCGACCGCATTAAGCCGCTAGTNTTCTCCAAAGATGAGAAGATAATAAGA
rJMSF034L02+ AGATAATAAGA
rJMSF036P08+ GACAACATCTGCGACCGCATTAAGCCGCTAGTCTTCTCCAAAGATGAGAAGATAATAAGA
rJMFF013N06+ TCCAAAGATGAGAAGATAATAAGA
rJMFF002F02+ TCCAAAGATGAGAAGATAATAAGA
____________________________________________________________
consensus GACAACATCTGCGACCGCATTAAGCCGCTAGTCTTCTCCAAAGATGAGAAGATAATAAGA
. : . : . : . : . : . :
rJMSF023K18+ GAAGGAGATCCGGTGCAACGAGTGGTGTTCATAGTCCGGGGCCGTGTAAAAAGCAGCCAA
rJMFF019A18+ GAAGGAGATCCGGTGCAACGAGTGGTGTTCATAGTCCGGGGCCGTGTAAAAAGCAGCCAA
rJMSF021O16+ GAAGGAGATCCGGTGCAACGAGTGGTGTTCATAGTCCGGGGCCGTGTAAAAAGCAGCCAA
rJMSF034B11+ GAAGGAGATCCGGTGCAACGAGTGGTGTTCATAGTCCGGGGCCGTGTAAAAAGCAGCCAA
rJMSF031P04+ GAAGGAGATCCGGTGCAACGAGTGGTGTTCATAGTCCGGGGCCGTGTAAAAAGCAGCCAA
rJMSF034L02+ GAAGGAGATCCGGTGCAACGAGTGGTGTTCATAGTCCGGGGCCGTGTAAAAAGCAGCCAA
rJMFF001G18+ TCCGGTGCAACGAGTGGTGTTCATAGTCCGGGGCCGTGTAAAAAGCAGCCAA
rJMSF036P08+ GAAGGAGATCCGGTGCAACGAGTGGTGTTCATAGTCCGGGGCCGTGTAAAAAGCAGCCAA
rJMFF013N06+ GAAGGAGATCCGGTGCAACGAGTGGTGTTCATAGTCCGGGGCCGTGTAAAAAGCAGCCAA
rJMFF009C10+ TGTTCATAGTCCGGGGCCGTGTAAAAAGCAGCCAA
rJMFF042E16+ CGTGTAAAAAGCAGCCAA
rJMFF002F02+ GAAGGAGATCCGGTGCAACGAGTGGTGTTCATAGTCCGGGGCCGTGTAAAAAGCAGCCAA
rJMFF042A18+ CGTGTAAAAAGCAGCCAA
____________________________________________________________
consensus GAAGGAGATCCGGTGCAACGAGTGGTGTTCATAGTCCGGGGCCGTGTAAAAAGCAGCCAA
. : . : . : . : . : . :
rJMSF023K18+ AACCTTAGCAAAGGGGTGGTGGCCACAAGCATCCTCGAACCAGGAGGCTTCTTAGGCGAT
rJMFF019A18+ AACCTTAGCAAAGGGGTGGTGGCCACAAGCATCCTCGAACCAGGAGGCTTCTTAGGCGAT
rJMSF021O16+ AACCTTAGCAAAGGGGTGGTGGCCACAAGCATCCTCGAACCAGGAGGCTTNTTAGGCGAT
rJMSF034B11+ AACCTTAGCAAAGGGGTGGTGGCCACAAGCATCCTCGAACCAGGAGGCTTNTTAGGCGAT
rJMSF031P04+ AACCTTAGCAAAGGGGTGGTGGCCACAAGCATCCTCGAACCAGGAGGCTTCTTAGGCGAT
rJMSF034L02+ AACCTTAGCAAAGGGGTGGTGGCCACAAGCATCCTCGAACCAGGAGGCTTCTTAGGCGAT
rJMFF001G18+ ANCCTTAGCAAAGGGGTGGTGGCCACAAGCATCCTCGAACCAGGAGGCTTTTTAGGCGAT
rJMSF036P08+ AACCTTAGCAAAGGGGTGGTGGCCACAAGCATCCTCGAACCAGGAGGCTTCTTAGGCGAT
rJMFF013N06+ AACCTTAGCAAAGGGGTGGTGGCCNCAAGCATCCTCGAACCAGGAGGCTTCTTAGGCGAT
rJMFF009C10+ AACCTTAGCAAAGGGGTGGTGGCCACAAGCATCCTCGAACCAGGAGGCTTCTTAGGCGAT
rJMFF042E16+ AACCTTAGCAAAGGGGTGGTGGCCACAAGCATCCTCGAACCAGGAGGCTTCTTAGGCGAT
rJMFF002F02+ AACCTTAGCAAAGGGGTGGTGGCCACAAGCATCCTNGAACCAGGAGGCTTNTTAGGCGAT
rJMFF042A18+ AACCTTAGCAAAGGGGTGGTGGCCACAAGCATCCTCGAACCAGGAGGCTTCTTAGGCGAT
____________________________________________________________
consensus AACCTTAGCAAAGGGGTGGTGGCCACAAGCATCCTCGAACCAGGAGGCTTCTTAGGCGAT
. : . : . : . : . : . :
rJMSF023K18+ GAGCTTCTCTCATGGTGTCTCCGCCGCCCCTTCATCGACAGGCTTCCGGCTTCCTCCGCC
rJMFF019A18+ GAGCTTCTCTCATGGTGTCTCCGCCGCCCCTTCATCGACAGGCTTCCGGCTTCCTCCGCC
rJMSF021O16+ GAGCTTCTCTCATGGTGTNTCCGCCGCCCCTTCATCGACAGGCTTCCGGCTTCCTCCGCC
rJMSF034B11+ GAGCTTCTCTCATGGTGTNTCCGCCGCCCCTTCATCGACAGGCTTCCGGCTTCCTCCGCC
rJMSF031P04+ GAGCTTCTCTCATGGTGTCTCCGCCGCCCCTTCATCGACAGGCTTCCGGCTTCCTCCGCC
rJMSF034L02+ GAGCTTCTCTCATGGTGTCTCCGCCGCCCCTTCATCGACAGGCTTCCGGCTTCCTCCGCC
rJMFF001G18+ GAGCTTCTNTCATGGTGTNTCCGCCGCCCCTTCATNGACAGGCTTCCGGCTTCCTNCGCC
rJMSF036P08+ GAGCTTCTCTCATGGTGTCTCCGCCGCCCCTTCATCGACAGGCTTCCGGCTTCCTCCGCC
rJMFF013N06+ GAGCTTNTTTCATGGTGTTTCCGCCGCCCCTTCATTGACAGGCTTCCGGCTTCCTCCGCC
rJMFF009C10+ GAGCTTCTNTCATGGTGTCTCCGCCGCCCCTTCATNGACAGGCTTCCGGCTTCCTCCGCC
rJMSF041F23+ TTCCGGCTTCCTCCGCC
rJMFF045M22+ ACAGGCTTCCGGCTTCCTCCGCC
rJMFF042E16+ GAGCTTCTCTCATGGTGTCTCCGCCGCCCCTTCATCGACAGGCTTCCGGCTTCCTCCGCC
rJMFF002F02+ GAGCTTCTCTCATGGTGTNTCCGCCGCCCCTTCATCGACAGGCTTCCGGCTTCCTCCTCC
rJMFF042A18+ GAGCTTCTCTCATGGTGTCTCCGCCGCCCCTTCATCGACAGGCTTCCGGCTTCCTCCGCC
____________________________________________________________
consensus GAGCTTCTCTCATGGTGTCTCCGCCGCCCCTTCATCGACAGGCTTCCGGCTTCCTCCGCC
. : . : . : . : . : . :
rJMSF023K18+ ACATTTACCTGCATCGACTCCACTGAAGCCTTCGGCCTTGACGCCAACCACCTCCGCTTC
rJMFF019A18+ ACATTTACCTGCATCGACTCCACTGAAGCCTTCGGCCTTGACGCCAACCACCTCCGCTTC
rJMSF021O16+ ACATTTACCTGCATCGACTCCACTGAAGCCTTCGGCCTTGACGCCAACCACCTCCGCTTC
rJMSF034B11+ ACATTTACCTGCATNGACTCCACTGAAGCCTTCGGCCTTGACGCCAACCACCTCCGCTTC
rJMSF031P04+ ACATTTACCTGCATNGACTCCACTGAAGCCTTCGGCCTTGACGCCAACCACCTCCGCTTC
rJMSF034L02+ ACATTTACCTGCATNGACTCCACTGAAGCCTTCGGCCTTGACGCCAACCACCTCCGCTTC
rJMFF001G18+ ACATTTACCTGCATNGACTCCACTGAAGCCTTCGGCCTTGACGCCAACCACCTCCGCTTC
rJMSF036P08+ ACATTTACCTGCATCGACTCCACTGAAGCCTTCGGCCTTGACGCCAACCACCTCCGCTTC
rJMFF013N06+ ACATTTACCTGCATNGACTCCACTGAAGCCTTNGGCCTTGACGCCAACCACCTCCGNTTC
rJMFF009C10+ ACATTTACCTGCATNGACTCCACTGAAGCCTTCGGCCTTGACGCCAACCACCTCCGCTTC
rJMSF041F23+ ACATTTACCTGCATCGACTCCACTGAAGCCTTCGGCCTTGACGCCAACCACCTCCGNTTC
rJMFF045M22+ ACATTTACCTGCATCGACTCCACTGAAGCCTTCGGCCTTGACGCCAACCACCTCCGCTTC
rJMFF042E16+ ACATTTACCTGCATCGACTCCACTGAAGCCTTCGGCCTTGACGCCAACCACCTCCGCTTC
rJMFF002F02+ ACATTTACCTGCATCGACTCCACTGAAGCCTTCGGCCTTGACGCCAACCACCTCCGCTTC
rJMFF042A18+ ACATTTACCTGCATCGACTCCACTGAAGCCTTCGGCCTTGACGCCAACCACCTCCGCTTC
____________________________________________________________
consensus ACATTTACCTGCATCGACTCCACTGAAGCCTTCGGCCTTGACGCCAACCACCTCCGCTTC
. : . : . : . : . : . :
rJMSF023K18+ ATCACCGATCACTTCAGGTACAAATTTGCCAACGAGAGGCTTAAGCGGACGGCAAGGTAT
rJMFF019A18+ ATCACCGATCACTTCAGGTACAAATTTGCCAACGAGAGGCTTAAGCGGACGGCAAGGTAT
rJMSF021O16+ ATCACCGATCACTTCAGGTACAAATTTGCCAACGAGAGGCTTAAGCGGACGGCAAGGTAT
rJMSF034B11+ ATCACCGATCACTTCAGGTACAAATTTGCCAACGAGAGGCTTAAGCGGACGGCAAGGTAT
rJMSF031P04+ ATCACCGATCACTTCAGGTACAAATTTGCCAACGAGAGGCTTAAGCGGACGGCAAGGTAT
rJMSF034L02+ ATCACCGATCACTTCAGGTACAAATTTGCCAACGAGAGGCTTAAGCGGACGGCAAGGTAT
rJMFF001G18+ ATCACCGATCACTTCAGGTACAAATTTGCCAACGAGAGGCTTAAGCGGACGGCAAGGTAT
rJMSF036P08+ ATCACCGATCACTTCAGGTACAAATTTGCCAACGAGAGGCTTAAGCGGACGGCAAGGTAT
rJMFF013N06+ ATCACCGATCACTTCAGGTACAAATTTGCCAACGAGAGGCTTAAGCGGACGGCAAGGTAT
rJMFF009C10+ ATCACCGATCACTTCAGGTACAAATTTGCCAACGAGAGGCTTAAGCGGACGGCAAGGTAT
rJMSF041F23+ ATCACCGATCACTTCAGGTACAAATTTGCCAACGAGAGGCTTAAGCGGACGGCAAGGTAT
rJMFF045M22+ ATCACCGATCACTTCAGGTACAAATTTGCCAACGAGAGGCTTAAGCGGACGGCAAGGTAT
rJMFF042E16+ ATCACCGATCACTTCAGGTACAAATTTGCCAACGAGAGGCTTAAGCGGACGGCAAGGTAT
rJMFF002F02+ ATCACCGATCACTTCAGGTACAAATTTGCCAACGAGAGGCTTAAGCGGACGGCAAGGTAT
rJMFF042A18+ ATCACCGATCACTTCAGGTACAAATTTGCCAACGAGAGGCTTAAGCGGACGGCAAGGTAT
____________________________________________________________
consensus ATCACCGATCACTTCAGGTACAAATTTGCCAACGAGAGGCTTAAGCGGACGGCAAGGTAT
. : . : . : . : . : . :
rJMSF023K18+ TACTCCGCCAACTGGAGAACCTGGGCCGCCGTGAATGTGCAGTTGGCGTGGCGGCGCTAC
rJMFF019A18+ TACTCCGCCAACTGGAGAACCTGGGCCGCCGTGAATGTGCAGTTGGCGTGGCGGCGCTAC
rJMSF021O16+ TACTCCGCCAACTGGAGAACCTGGGCCGCCGTGAATGTGCAGTTGGCGTGGCGGCGCTAC
rJMSF034B11+ TACTCCGCCAACTGGAGAACCTGGGCCGCCGTGAATGTGCAGTTGGCGTGGCGGCGCTAC
rJMSF031P04+ TACTCCGCCAACTGGAGAACCTGGGCCGCCGTGAATGTGCAGTTGGCGTGGCGGCGCTAC
rJMSF034L02+ TACTCCGCCAACTGGAGAACCTGGGCCGCCGTGAATGTGCAGTTGGCGTGGCGGCGCTAC
rJMFF001G18+ TACTNCGCCAACTGGAGAACCTGGGCCGCCGTGAATGTGCAGTTGGCGTGGCGGCGCTAC
rJMSF036P08+ TACTCCGCCAACTGGAGAACCTGGGCCGCCGTGAATGTGCAGTTGGCGTGGCGGCGCTAC
rJMFF013N06+ TACTCCGCCAACTGGAGAACCTGGGCCGCCGTGAATGTGCAGTTGGCGTGGCGGCGCTAC
rJMFF009C10+ TACTCCGCCAACTGGAGAACCTGGGCCGCCGTGAATGTGCAGTTGGCGTGGCGGCGCTAC
rJMSF041F23+ TACTCCGCCAACTGGAGAACCTGGGCCGCCGTGAATGTGCAGTTGGCGTGGCGGCGNTAC
rJMFF045M22+ TACTCCGCCAACTGGAGAACCTGGGCCGCCGTGAATGTGCAGTTGGCGTGGCGGCGCTAC
rJMFF042E16+ TACTCCGCCAACTGGAGAACCTGGGCCGCCGTGAATGTGCAGTTGGCGTGGCGGCGCTAC
rJMFF002F02+ TACTCCGCCAACTGGAGAACCTGGGCCGCCGTGAATGTGCAGTTGGCGTGGCGGCGCTAC
rJMFF042A18+ TACTCCGCCAACTGGAGAACCTGGGCCGCCGTGAATGTGCAGTTGGCGTGGCGGCGCTAC
____________________________________________________________
consensus TACTCCGCCAACTGGAGAACCTGGGCCGCCGTGAATGTGCAGTTGGCGTGGCGGCGCTAC
. : . : . : . : . : . :
rJMSF023K18+ AGGCTCAGGACTAGAGGTCAGCCTAATACTGTGCCGGAAAATGCAGACGACGGCGATCGA
rJMFF019A18+ AGGCTCAGGACTAGAGGTCAGCCTAATACTGTGCCGGAAAATGCAGACGACGGCGATCGA
rJMSF021O16+ AGGCTCAGGACTAGAGGTCAGCCTAATACTGTGCCGGAAAATGCAGACGACGGCGATCGA
rJMSF034B11+ AGGCTCAGGACTAGAGGTCAGCCTAATACTGTGCCGGAAAATGCAGACGACGGCGATCGA
rJMSF031P04+ AGGCTCAGGACTAGAGGTCAGCCTAATACTGTGCCGGAAAATGCAGACGACGGCGATCGA
rJMSF034L02+ AGGCTCAGGACTAGAGGTCAGCCTAATACTGTGCCGGAAAATGCAGACGACGGCGATCGA
rJMFF001G18+ AGGCTCAGGACTAGAGGTCAGCCTAATNCTGTGCCGGAAAATGCAGACGACGGCGATCGA
rJMSF036P08+ AGGCTCAGGACTAGAGGTCAGCCTAATACTGTGCCGGAAAATGCAGACGACGGCGATCGA
rJMFF013N06+ AGGCTCAGGACTAGAGGTAAGCCTAATACTGTGCCGGAAAATGCAGACGACGGCGATNGA
rJMFF009C10+ AGGCTCAGGACTAGAGGTCAGCCTAATACTGTGCCGGAAAATGCAGACGACGGCGATCGA
rJMSF041F23+ AGGCTCAGGACTAGAGGTCAGCCTAATACTGTGCCGGAAAATGCAGACGACGGCGATCGA
rJMFF045M22+ AGGCTCAGGACTAGAGGTCAGCCTAATACTGTGCCGGAAAATGCAGACGACGGCGATCGA
rJMFF042E16+ AGGCTCAGGACTAGAGGTCAGCCTAATACTGTGCCGGAAAATGCAGACGACGGCGATCGA
rJMFF002F02+ AGGCTCAGGACTAGAGGTCAGCCTAATACTGTGCCGGAAAATGCAGACGACGGCGATCGA
rJMFF042A18+ AGGCTCAGGACTAGAGGTCAGCCTAATACTGTGCCGGAAAATGCAGACGACGGCGATCGA
____________________________________________________________
consensus AGGCTCAGGACTAGAGGTCAGCCTAATACTGTGCCGGAAAATGCAGACGACGGCGATCGA
. : . : . : . : . : . :
rJMSF023K18+ CGGCTCCGGCAGTATGCCGCGATGTTCTTGTCAATCAGACCACACGACCACCTTGAGTGA
rJMFF019A18+ CGGCTCCGGCAGTATGCCGCGATGTTCTTGTCAATCAGACCACACGACCACCTTGAGTGA
rJMSF021O16+ CGGCTCCGGCAGTATGCCGCGATGTTCTTGTCAATCAGACCACACGACCACCTTGAGTGA
rJMSF034B11+ CGGCTCCGGCAGTATGCCGCGATGTTCTTGTCAATCAGACCACACGACCNCCTTGAGTGA
rJMSF031P04+ CGGCTCCGGCAGTATGCCGCGATGTTCTTGTCAATCAGACCACACGACCACCTTGAGTGA
rJMSF034L02+ CGGCTCCGGCAGTATGCCGCGATGTTCTTGTCAATCAGACCACACGACCACCTTGAGTGA
rJMFF001G18+ CGGCTCCGGCAGTATGCCGCGATGTTNTTGTCAATCAGACCACACGACCACCTTGAGTGA
rJMSF036P08+ CGGCTCCGGCAGTATGCCGCGATGTTCTTGTCAATCAGACCACACGACCACCTTGAGTGA
rJMFF013N06+ CGGCTCCGGCAGTATGCCGCGATGTTNTTGTCAATCAGACCACACGACCNCCTTGAGTGA
rJMFF009C10+ CGGCTCCGGCAGTATGCCGCGATGTTCTTGTCAATCAGACCACACGACCNCCTTGAGTGA
rJMSF041F23+ CGGCTCCGGCAGTATGCCGCGATGTTCTTGTCAATCAGACCNCACGACCACCTTGAGTGA
rJMFF045M22+ CGGCTCCGGCAGTATGCCGCGATGTTTTTGTCAATCAGACC
rJMFF042E16+ CGGCTCCGGCAGTATGCCGCGATGTTCTTGTCAATCAGACCACACGACCACCTTGAGTGA
rJMFF002F02+ CGGCTCCGGCAGTATGCCGCGATGTTNTTGTCAATCAGACCACACGACCACCTTGAGTGA
rJMFF042A18+ CGGCTCCGGCAGTATGCCGCGATGTTCTTGTCAATCAGACCACACGACCACCTTGAGTGA
____________________________________________________________
consensus CGGCTCCGGCAGTATGCCGCGATGTTCTTGTCAATCAGACCACACGACCACCTTGAGTGA
. : . : . : . : . : . :
rJMSF023K18+ TATATTATTCTTTGTTTTCCTCATTTTTAATTTTCGATTGGTTAAGGTTGATATTATTAA
rJMFF019A18+ TATATTATTCTTTGTTTTCCTCATTTTTAATTTTCGATTGGTTAAGGTTGATATTATTAA
rJMSF021O16+ TATATTATTCTTTGTTTTCCTCATTTTTAATTTTCGATTGGTTAAGGTTGATATTATTAA
rJMSF034B11+ TATATTATTCTTTGTTTTCCTCATTTTTAATTTTCGATTGGTTAAGGTTGATATTATTAA
rJMSF031P04+ TATATTATTCTTTGTTTTCCTCATTTTTAATTTTCGATTGGTTAAGGTTGATATTATTAA
rJMSF034L02+ TATATTATTCTTTGTTTTCCTCATTTTTAATTTTCGATTGGTTAAGGTTGATATTATTAA
rJMFF001G18+ TATATTATTNTTTGTTTTCCTCATTTTTAATTTTCGATTGGTTAAGGTTGATATTATTAA
rJMSF036P08+ TATATTATTCTTTGTTTTCCTCATTTTTAATTTTCGATTGGTTAAGGTTGATATTATTAA
rJMFF013N06+ TATATTATTCTTTGTTTTCCTCATTTTTAATTTTCGATTGGTTAAGGTTGATATTATTAA
rJMFF009C10+ TATATTATTCTTTGTTTTCCTCATTTTTAATTTTCGATTGGTTAAGGTTGATATTATTAA
rJMSF041F23+ TATATTATTCTTTGTTTTCCTCATTTTTAATTTTCGATTGGTTAAGGTTGATATTATTAA
rJMFF042E16+ TATATTATTCTTTGTTTTCCTCATTTTTAATTTTCGATTGGTTAAGGTTGATATTATTAA
rJMFF002F02+ TATATTATTCTTTGTTTTCCTCATTTTTAATTTTCGATTGGTTAAGGTTGATATTATTAA
rJMFF042A18+ TATATTATTCTTTGTTTTCCTCATTTTTAATTTTCGATTGGTTAAGGTTGATATTATTAA
____________________________________________________________
consensus TATATTATTCTTTGTTTTCCTCATTTTTAATTTTCGATTGGTTAAGGTTGATATTATTAA
. : . : . : . : . : . :
rJMSF023K18+ GGTTT
rJMFF019A18+ GGTTTTAGGATCATTGTGATATTGTTTG
rJMSF021O16+ GGTTTTAGGATCATTGTGATATTGTTTGATGGCAATAAAAGGTACTCTGTACTTAAATAA
rJMSF034B11+ GGTTTTAGGATCATTGTGATATTGTTTGATGGCAATAAAAGGTACTCTGTACTTAAATAA
rJMSF031P04+ GGTTTTAGGATCATTGTGATATTGTTTGATGGCAATAAAAGGTACTCTG
rJMSF034L02+ GGTTTTAGGATCATTGTGATATTGTTTGATGGCAATAAAAGGTACTCTGTACTTAAATAA
rJMFF001G18+ GGTTTTAGGATCATTGTGATATTGTTTGATGGCAATAAAAGGTACTCTGTACTTAAATAA
rJMSF036P08+ GGTTTTAGGATCATTGTGATATTGTTTGATGGCAATAAAAGGTACTCTGTACTTAAATAA
rJMFF013N06+ GGTTTTAGGATCATTGTGATATTGTTTGATGGCAATAAAAGGTACTCTGTACTTAAATAA
rJMFF009C10+ GGTTTTAGGATCATTGTGATATTGTTTGATGGCAATAAAAGGTACTCTGTACTTAAATAA
rJMSF041F23+ GGTTTTAGGATCATTGTGATANNGTTTGATGGCAATAAAAGGTACTCTGTA
rJMFF042E16+ GGTTTTAGGATCATTGTGATATTGTTTGATGGCAATAAAAGGTACTCTGTACTTAAA
rJMFF002F02+ GGTTTTAGGATCATTGTGATATTGTTTGATGGCAATAAAAGGTACTCTGTACTTAAATAA
rJMFF042A18+ GGTTTTAGGATCATTGTGATATTGTTTGATGGCAATAAAAGGTACTCTGTACTTAAATAA
____________________________________________________________
consensus GGTTTTAGGATCATTGTGATATTGTTTGATGGCAATAAAAGGTACTCTGTACTTAAATAA
. : . : . : . : . : . :
rJMSF021O16+ ATTCTTT
rJMSF034B11+ ATTCTTTT
rJMSF034L02+ ATTCTT
rJMFF001G18+ AT
rJMSF036P08+ ATTCTTTTT
rJMFF013N06+ ATTCTTTTTTTTTT
rJMFF009C10+ ATTCTTTTTTTTTT
rJMFF002F02+ ATTCTTTTTTTTTTCTTTTCAAAAACTTCAATAAATACAT
rJMFF042A18+ ATTCTTTTTTTTTTCTTTTCAAAAACTTCAATAAATACATTGTTTTCCAAGTAAAAAAAG
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consensus ATTCTTTTTTTTTTCTTTTCAAAAACTTCAATAAATACATTGTTTTCCAAGTAAAAAAAG