Contig 005493:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF041P02Sequence640002309 (5)ref|XP_009796803.1|7e-105PREDICTED: elongator complex protein 2 [Nicotiana sylvestris]616005493 (3)ref|XP_002526286.1|1e-71nucleotide binding protein, putative [Ricinus communis] gb|EEF36075.1| nucleotid
JMSF030H18Sequence668002309 (5)ref|XP_009796803.1|5e-103PREDICTED: elongator complex protein 2 [Nicotiana sylvestris]770005493 (3)ref|XP_002526286.1|1e-96nucleotide binding protein, putative [Ricinus communis] gb|EEF36075.1| nucleotid
JMSF031H14Sequence654002309 (5)ref|XP_009796803.1|2e-93PREDICTED: elongator complex protein 2 [Nicotiana sylvestris]747005493 (3)ref|XP_002526286.1|7e-98nucleotide binding protein, putative [Ricinus communis] gb|EEF36075.1| nucleotid

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF030H18+ CATGCAAGGCTCAATCAGCATCAGTTGCAGA
                      ____________________________________________________________
consensus CATGCAAGGCTCAATCAGCATCAGTTGCAGA
 
. : . : . : . : . : . :
rJMSF030H18+ AGTATGGCTTGGCAAGTGGGTTCTNGAAGTCAGTCGGCCGCCTCCATTCACACAGCTTGA
rJMSF031H14+ TTGGCAAGTGGGTTCTGGAAGTCAGTCGGCCGCCTCCATTCACACAGCTTGA
                      ____________________________________________________________
consensus AGTATGGCTTGGCAAGTGGGTTCTGGAAGTCAGTCGGCCGCCTCCATTCACACAGCTTGA
 
. : . : . : . : . : . :
rJMSF030H18+ CAGTGACTCAGATGGAGTTTTCTCACGATGACAACTACCTTCTCACTGTTTCAAGGGATC
rJMSF031H14+ CAGTGACTCAGATGGAGTTTTCTCACGATGACAACTACCTTCTCACTGTTTCAAGGGATC
                      ____________________________________________________________
consensus CAGTGACTCAGATGGAGTTTTCTCACGATGACAACTACCTTCTCACTGTTTCAAGGGATC
 
. : . : . : . : . : . :
rJMSF030H18+ GCCACTTTTCTGTTTTCTCAATTAATCATACAGGTAATGACACGAGTTACCAGCTTGTAT
rJMSF031H14+ GCCACTTTTCTGTTTTCTCAATTAATCATACAGGTAATGACACGAGTTACCAGCTTGTAT
rJMFF041P02+ GAGTTACCAGCTGGTAT
                      ____________________________________________________________
consensus GCCACTTTTCTGTTTTCTCAATTAATCATACAGGTAATGACACGAGTTACCAGCTTGTAT
 
. : . : . : . : . : . :
rJMSF030H18+ CTAAGCAGGAGGCACATAAAAGAATAATATGGGCATGTTCTTGGAACCCATACGGTAATG
rJMSF031H14+ CTAAGCAGGAGGCACATAAAAGAATAATATGGGCATGTTCTTGGAACCCATACGGTAATG
rJMFF041P02+ CTAAGCAGGAGGCACATAAAAGAATAATATGGGCATGTTCTTGGAACCCATACGGTAATG
                      ____________________________________________________________
consensus CTAAGCAGGAGGCACATAAAAGAATAATATGGGCATGTTCTTGGAACCCATACGGTAATG
 
. : . : . : . : . : . :
rJMSF030H18+ AATTCGCCACTGGCTCAAGGGACAAGACCGTCAAAATCTGGGCGGTGGAAAATGAGGCCT
rJMSF031H14+ AATTCGCCACTGGCTCAAGGGACAAGACCGTCAAAATCTGGGCGGTGGAAAATGAGGCCT
rJMFF041P02+ AATTCGCCACTGGCTCAAGGGACAAGACCGTCAAAATCTGGGCGGTGGAAAATGAGGCCT
                      ____________________________________________________________
consensus AATTCGCCACTGGCTCAAGGGACAAGACCGTCAAAATCTGGGCGGTGGAAAATGAGGCCT
 
. : . : . : . : . : . :
rJMSF030H18+ CGGTGAAACAACTCCTGACTCTGCCGATATTCAACGCTAGTGTGACATCCCTATCTTGGG
rJMSF031H14+ CGGTGAAACAACTCCTGACTCTGCCGATATTCAACGCTAGTGTGACATCCCTATCTTGGG
rJMFF041P02+ CGGTGAAACAACTCCTGACTCTGCCGATATTCAACGCTAGTGTGACATCCCTATCTTGGG
                      ____________________________________________________________
consensus CGGTGAAACAACTCCTGACTCTGCCGATATTCAACGCTAGTGTGACATCCCTATCTTGGG
 
. : . : . : . : . : . :
rJMSF030H18+ TTGGCCTTAGTCGCCCCAACAACCATGGCCTTCTTGCAGTGGGGATGGAAAACGGTTTGA
rJMSF031H14+ TTGGCCTTAGTCGCCCCAACAACCATGGCCTTCTTGCAGTGGGGATGGAAAACGGTTTGA
rJMFF041P02+ TTGGCCTTAGTCGCCCCAACAACCATGGCCTTCTTGCAGTGGGGATGGAAAACGGTTTGA
                      ____________________________________________________________
consensus TTGGCCTTAGTCGCCCCAACAACCATGGCCTTCTTGCAGTGGGGATGGAAAACGGTTTGA
 
. : . : . : . : . : . :
rJMSF030H18+ TCGAGTTATGGAGCCTTCATAGCAGAAGAACCGAAGATGGTAGCCCATCATCAGTTCCAA
rJMSF031H14+ TCGAGTTATGGAGCCTTCATAGCAGAAGAACCGAAGATGGTAGCCCATCATCAGTTCCAA
rJMFF041P02+ TCGAGTTATGGAGCCTTCATAGCAGAAGAACCGAAGATGGTAGCCCATCATCAGTTCCAA
                      ____________________________________________________________
consensus TCGAGTTATGGAGCCTTCATAGCAGAAGAACCGAAGATGGTAGCCCATCATCAGTTCCAA
 
. : . : . : . : . : . :
rJMSF030H18+ CCGCTAATCTTGCTGTTAAACTCGATCCTTTTATGTGCCACGTATCCACTGTCAACCGGT
rJMSF031H14+ CCGCTAATCTTGCTGTTAAACTCGATCCTTTTATGTGCCACGTATCCACTGTCAACCGGT
rJMFF041P02+ CCGCTAATCTTGCTGTTAAGCTCGATCCTTTTATGTGCCACGTATCCACTGTCAACCGGT
                      ____________________________________________________________
consensus CCGCTAATCTTGCTGTTAAACTCGATCCTTTTATGTGCCACGTATCCACTGTCAACCGGT
 
. : . : . : . : . : . :
rJMSF030H18+ TATCATGGAGAAACTCGGAGAAAAGCGAAGAATCCAACGCCATGCAACTTGCGTCGTGTG
rJMSF031H14+ TATCATGGAGAAACTCGGAGAAAAGCGAAGAATCCAACGCCATGCAACTTGCGTCGTGTG
rJMFF041P02+ TATCATGGAGAAACTCGGAGAAAAGCGAAGAATCCAACGCCATGCAACTTGCGTCGTGTG
                      ____________________________________________________________
consensus TATCATGGAGAAACTCGGAGAAAAGCGAAGAATCCAACGCCATGCAACTTGCGTCGTGTG
 
. : . : . : . : . : . :
rJMSF030H18+ GGGCTGATCAATGCGTGAGAATATTTAACGTATGTTTTGGTTGAGCCAGAAATGAAATTT
rJMSF031H14+ GGGCTGATCAATGCGTGAGAATATTTAACGTATGTTTTGGTTGAGCCAGAAATGAAATTT
rJMFF041P02+ GGGCTGATCAATGCGTGAGAATATTTAACGTATGTTTTGGTTGAGCCAGAAATGAAATTT
                      ____________________________________________________________
consensus GGGCTGATCAATGCGTGAGAATATTTAACGTATGTTTTGGTTGAGCCAGAAATGAAATTT
 
. : . : . : . : . : . :
rJMSF030H18+ TGTAGATAGAACTTTGAAGCATGTTTGTATTTTAATCA-CCTGAAATATATAGAAATTGG
rJMSF031H14+ TGTAGATAGAACTTTGAAGCATGTTTGTATTTTAATCAGCCTGAAATATATAGAAATTGG
rJMFF041P02+ TGTAGATAGAACTTTGAAGCATGTTTGTATTTTAATCA-CCTGAAATATATAGAAATTGG
                      ____________________________________________________________
consensus TGTAGATAGAACTTTGAAGCATGTTTGTATTTTAATCA-CCTGAAATATATAGAAATTGG
 
. : . : . : . : . : . :
rJMSF030H18+ GATGACTATAATGTTTGAAA
rJMSF031H14+ GATGACTATAATGTTTGAAA
rJMFF041P02+ GATGACTATAATGTTTGAAACATTAGTTGGTAGTTTATGCTATTTACTTCAACTTTTCCC
                      ____________________________________________________________
consensus GATGACTATAATGTTTGAAACATTAGTTGGTAGTTTATGCTATTTACTTCAACTTTTCCC