| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF006J08 | Sequence | 443 | 004623 (28) | dbj|BAA83809.1| | 4e-64 | 24 kDa vacuolar protein VP24 [Ipomoea batatas] | 735 | 005492 (3) | dbj|BAA83809.1| | 8e-123 | 24 kDa vacuolar protein VP24 [Ipomoea batatas] |
| JMFF041I16 | Sequence | 648 | 004623 (28) | dbj|BAA83809.1| | 5e-112 | 24 kDa vacuolar protein VP24 [Ipomoea batatas] | 534 | 005492 (3) | dbj|BAA83809.1| | 4e-45 | 24 kDa vacuolar protein VP24 [Ipomoea batatas] |
| JMFF050K19 | Sequence | 623 | 004623 (28) | dbj|BAA83809.1| | 7e-110 | 24 kDa vacuolar protein VP24 [Ipomoea batatas] | 466 | 005492 (3) | dbj|BAA83809.1| | 6e-54 | 24 kDa vacuolar protein VP24 [Ipomoea batatas] |
This contig is upended
. : . : . : . : . : . :
rJMFF006J08+ AGGGGAGGGTATGGTGACACACATATCTCTGTTTTCGACGACTCCGGGAGGGTTGG
____________________________________________________________
consensus AGGGGAGGGTATGGTGACACACATATCTCTGTTTTCGACGACTCCGGGAGGGTTGG
. : . : . : . : . : . :
rJMFF006J08+ AGGTGGAGGCTGAAAAGCTTGGAGGAGGATTGGTTTGCGGCAGAGAGAAGGCGTTTGATT
____________________________________________________________
consensus AGGTGGAGGCTGAAAAGCTTGGAGGAGGATTGGTTTGCGGCAGAGAGAAGGCGTTTGATT
. : . : . : . : . : . :
rJMFF006J08+ TTGTAACATTCACTGCNTATTATAGCTGCTGGAGTGCTGAACATGGGTGGTGCAATAATG
____________________________________________________________
consensus TTGTAACATTCACTGCNTATTATAGCTGCTGGAGTGCTGAACATGGGTGGTGCAATAATG
. : . : . : . : . : . :
rJMFF006J08+ CCCAGATTCCTGCGCTTCGTGTTGCCAGTGATTCGCACGGAAATGGTGACGACATATCTA
____________________________________________________________
consensus CCCAGATTCCTGCGCTTCGTGTTGCCAGTGATTCGCACGGAAATGGTGACGACATATCTA
. : . : . : . : . : . :
rJMFF006J08+ CTTTAGTCAATATCAATACAGAACATTCCACTCGCTGGTGCCTCAGCATTAACACAAATG
____________________________________________________________
consensus CTTTAGTCAATATCAATACAGAACATTCCACTCGCTGGTGCCTCAGCATTAACACAAATG
. : . : . : . : . : . :
rJMFF006J08+ AAATCCAAGACTTCCAGCTCCATGATGAAAGTGGGGAGTTGGTTTCGCGCGGCGACAAGA
rJMFF041I16+ AAGACTCCCAGCTCCATTATAAAAATGGGGAATTGGTTTTGCGCGGCGACAAGA
____________________________________________________________
consensus AAATCCAAGACTTCCAGCTCCATTATGAAAGTGGGGAGTTGGTTTTGCGCGGCGACAAGA
. : . : . : . : . : . :
rJMFF006J08+ ACAGCGTGAATGGTTGGCACCTTATGCAATTCGCAGGAGGGAAGAATTCACCAACCAAGT
rJMFF050K19+ GAATGGTTGGCACCTTATGCAATTCGCAGGAGGGAAGAATTCACCAACCAAGT
rJMFF041I16+ AAAGGGTGAATGGTTGGCCCCTTATGCAATTTGCAGGAGGGAAGAATTCCCCAACCAAGT
____________________________________________________________
consensus ACAGGGTGAATGGTTGGCACCTTATGCAATTCGCAGGAGGGAAGAATTCACCAACCAAGT
. : . : . : . : . : . :
rJMFF006J08+ TCGACTTGACTCTCCACTGGCACAAAAATAGCTCTGGGAAAAGGATAGTGAAGGGATCTG
rJMFF050K19+ TCGACTTGACTCTCCACTGGCACAAAAATAGCTCTGGGAAAAGGATAGTGAAGGGATCTG
rJMFF041I16+ TCGGCTTGGCTCTCCCCTGGCCCAAAAAAAGCTTTGGGAAAAGGATAGTGAAGGGATTTA
____________________________________________________________
consensus TCGACTTGACTCTCCACTGGCACAAAAATAGCTCTGGGAAAAGGATAGTGAAGGGATCTG
. : . : . : . : . : . :
rJMFF006J08+ AAGGTGGTGAAGTGCTGCTGAAACTGAGAGCAGATGTAAATGCAACAACTCCAGAACTGG
rJMFF050K19+ AAGGTGGTGAAGTGCTGCTGAAACTGAGAGCAGATGTAAATGCAACAACTCCAGAACTGG
rJMFF041I16+ AAGGTGGTGAAGTGCTGCTGAAACTTAGAGCAGATGTAAATGCAACAACTCCAGAACTGG
____________________________________________________________
consensus AAGGTGGTGAAGTGCTGCTGAAACTGAGAGCAGATGTAAATGCAACAACTCCAGAACTGG
. : . : . : . : . : . :
rJMFF006J08+ ATAAAATACTGGAGAAGATGCCTTCTTGGATTTCTCAGTATGGGAAGTCAACTTCACCCT
rJMFF050K19+ ATAAAATACTGGAGAAGATGCCTTCTTGGATTTCTCAGTATGGGAAGTCAACTTCACCCT
rJMFF041I16+ ATAAAATACTGGAAAAAAAGCCTTTTTGGATTTTTCAGTATGGGAAGTCAACTTCCCCCT
____________________________________________________________
consensus ATAAAATACTGGAGAAGATGCCTTCTTGGATTTCTCAGTATGGGAAGTCAACTTCACCCT
. : . : . : . : . : . :
rJMFF006J08+ ATACCTTTGCTTACTTCGATACTATGTATGTTGCAGACTCTTCTCTAACAATGGGCACTT
rJMFF050K19+ ATACCTTTGCTTACTTCGATACTATGTATGTTGCAGACTCTTCTCTAACAATGGGCACTT
rJMFF041I16+ AAACCTTTGCTTACTTTGATACTATGTATGTTGCAGACTTTTTTCTAACAATGGGCAATT
____________________________________________________________
consensus ATACCTTTGCTTACTTCGATACTATGTATGTTGCAGACTCTTCTCTAACAATGGGCACTT
. : . : . : . : . : . :
rJMFF006J08+ CAGTTTCTGTGGCAAGTGATGAGTAGAAGTATCTATCACCCTATGGGTTGTAATAAATTT
rJMFF050K19+ CAGTTTCTGTGGCAAGTGATGAGTAGAAGTATCTATCCCCCTATGGGTTGTAATAAATTT
rJMFF041I16+ CAGTTTTTGTGGCAAGTGATAAGTAAAAGTATCTATCCCCCTATGGGGTGTAATAAATTT
____________________________________________________________
consensus CAGTTTCTGTGGCAAGTGATGAGTAGAAGTATCTATCCCCCTATGGGTTGTAATAAATTT
. : . : . : . : . : . :
rJMFF050K19+ CTACTACAAATAATGAAAACAATCTTGTAATTTAGCCGTATTGGTG
rJMFF041I16+ TTTCTCCAAATAATGAAAACAATCTTGTAATTTACCCGTATTGGTGCCXXXXXXXXXXXX
____________________________________________________________
consensus TTTCTCCAAATAATGAAAACAATCTTGTAATTTAGCCGTATTGGTGCCNNNNNNNNNNNN
. : . : . : . : . : . :
rJMFF041I16+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAAAAAAAAAAAAAACT
____________________________________________________________
consensus NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAAAAAAAAAAAAAACT