Contig 005483:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF039G05Sequence508005483 (2)emb|CAN63613.1|3e-26hypothetical protein VITISV_005881 [Vitis vinifera]
JMSF051C08Sequence677005483 (2)ref|XP_008452860.1|5e-126PREDICTED: transcription initiation factor TFIID subunit 5 [Cucumis melo]730005844 (10)ref|XP_010556278.1|114PREDICTED: uncharacterized protein LOC104825617 [Tarenaya hassleriana]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF051C08+ ATTACTT
                      ____________________________________________________________
consensus ATTACTT
 
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JMSF051C08+ TGCCAGTGCTTCACATGATCGAACAGCAAGGATCTGGTCAATGGACAGAATACAGCCTCT
                      ____________________________________________________________
consensus TGCCAGTGCTTCACATGATCGAACAGCAAGGATCTGGTCAATGGACAGAATACAGCCTCT
 
. : . : . : . : . : . :
JMSF051C08+ GAGGATAATGGCTGGTCACTTATCTGATGTTGATTGTGTGCAATGGCATGCAAACTGCAA
                      ____________________________________________________________
consensus GAGGATAATGGCTGGTCACTTATCTGATGTTGATTGTGTGCAATGGCATGCAAACTGCAA
 
. : . : . : . : . : . :
JMSF051C08+ CTACATTGCAACTGGATCAAGTGACAAAACTGTTCGGTTGTGGGATGTCCAGAGTGGCGA
                      ____________________________________________________________
consensus CTACATTGCAACTGGATCAAGTGACAAAACTGTTCGGTTGTGGGATGTCCAGAGTGGCGA
 
. : . : . : . : . : . :
JMSF051C08+ GTGTGTCAGAATTTTCATTGGCCATAGGAGTATGATATTGTCGTTGGCGATGTCACCTGA
                      ____________________________________________________________
consensus GTGTGTCAGAATTTTCATTGGCCATAGGAGTATGATATTGTCGTTGGCGATGTCACCTGA
 
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JMSF051C08+ TGGTCGTTATATGGCATCAGGTGATGAAGATGGAAAAATCATGGTGTGGGATCTTGCAAG
                      ____________________________________________________________
consensus TGGTCGTTATATGGCATCAGGTGATGAAGATGGAAAAATCATGGTGTGGGATCTTGCAAG
 
. : . : . : . : . : . :
JMSF051C08+ TGGTCGTTGTATTACCCCTTTGGTTGGTCACGCCTCTTGCGTATGGACACTTGCTTTCAG
                      ____________________________________________________________
consensus TGGTCGTTGTATTACCCCTTTGGTTGGTCACGCCTCTTGCGTATGGACACTTGCTTTCAG
 
. : . : . : . : . : . :
JMSF051C08+ CTGTGAAGGTTCTCTTCTTGCATCTGGTTCTGCTGATTGCACTGTGAAATTATGGGATGT
rJMFF039G05+ CTGATTGCACTGTGAAATTATGGGATGT
                      ____________________________________________________________
consensus CTGTGAAGGTTCTCTTCTTGCATCTGGTTCTGCTGATTGCACTGTGAAATTATGGGATGT
 
. : . : . : . : . : . :
JMSF051C08+ AACCACGAGTACTAAGATGCCAAAATCTGAAGAGAATAAATCTGGAAGTACCAATAGGCT
rJMFF039G05+ AACCACGAGTACTAAGATGCCAAAATCTGAAGAGAATAAATCTGGAAGTACCAATAGGCT
                      ____________________________________________________________
consensus AACCACGAGTACTAAGATGCCAAAATCTGAAGAGAATAAATCTGGAAGTACCAATAGGCT
 
. : . : . : . : . : . :
JMSF051C08+ TCGATCATTGAAGACTCTCCCTACTAAATCCACTCCATTATATGCTTTGCGGTTTTCTCG
rJMFF039G05+ TCGATCATTGAAGACTCTCCCTACTAAATCCACTCCATTATATGCTTTGCGGTTTTCTCG
                      ____________________________________________________________
consensus TCGATCATTGAAGACTCTCCCTACTAAATCCACTCCATTATATGCTTTGCGGTTTTCTCG
 
. : . : . : . : . : . :
JMSF051C08+ AAGAAATCTTCTCTTTGCTGCTGGCGCTTTCTCAAAAAGTGCATAATATTACAACATATT
rJMFF039G05+ AAGAAATCTTCTCTTTGCTGCTGGCGCTTTCTCAAAAAGTGCATAATATTACAACATATT
                      ____________________________________________________________
consensus AAGAAATCTTCTCTTTGCTGCTGGCGCTTTCTCAAAAAGTGCATAATATTACAACATATT
 
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JMSF051C08+ CACATTGGAAAATTTAGACTGATTATGGCTTCTAGATTTCGGGAGCAAGACCAAAAACCG
rJMFF039G05+ CACATTGGAAAATTTAGACTGATTATGGCTTCTAGATTTCGGGAGCAAGACCAAAAACCG
                      ____________________________________________________________
consensus CACATTGGAAAATTTAGACTGATTATGGCTTCTAGATTTCGGGAGCAAGACCAAAAACCG
 
. : . : . : . : . : . :
JMSF051C08+ GGGAGAACTT
rJMFF039G05+ GGGAGAACTTCTCGAGGAGCATTGGGAGAGTTAGAGTAATTGGAAATTCTACTTAGTTTG
                      ____________________________________________________________
consensus GGGAGAACTTCTCGAGGAGCATTGGGAGAGTTAGAGTAATTGGAAATTCTACTTAGTTTG
 
. : . : . : . : . : . :
rJMFF039G05+ CTTTAGTTTTCTTATGCTTCCATATACTTTAGCCACTTATTGGCCTTTATTTTTAGGATT
                      ____________________________________________________________
consensus CTTTAGTTTTCTTATGCTTCCATATACTTTAGCCACTTATTGGCCTTTATTTTTAGGATT
 
. : . : . : . : . : . :
rJMFF039G05+ TTTATACTGGCTTGAGATCTAATTATATTATATATGTTGAAACACAAAGGCCTGTTTATG
                      ____________________________________________________________
consensus TTTATACTGGCTTGAGATCTAATTATATTATATATGTTGAAACACAAAGGCCTGTTTATG
 
. : . : . : . : . : . :
rJMFF039G05+ TCTACGAATATGTAGCCTGATGAGAGGGCACAATGTGTCTATATATATATATATATATAT
                      ____________________________________________________________
consensus TCTACGAATATGTAGCCTGATGAGAGGGCACAATGTGTCTATATATATATATATATATAT