Contig 005476:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF003I23Sequence522004605 (2)ref|XP_006294368.1|3e-33hypothetical protein CARUB_v10023386mg [Capsella rubella] gb|EOA27266.1| hypothe678005476 (2)emb|CDO97698.1|2e-47unnamed protein product [Coffea canephora]
JMFF037I14Sequence523004605 (2)ref|XP_006294368.1|5e-25hypothetical protein CARUB_v10023386mg [Capsella rubella] gb|EOA27266.1| hypothe743005476 (2)ref|XP_008438173.1|214PREDICTED: uncharacterized protein LOC103483359 [Cucumis melo]

Alignment

This contig is upended


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rJMFF037I14+                                               GTCTATAGTACCAAGTATATGAA
                      ____________________________________________________________
consensus                                                  GTCTATAGTACCAAGTATATGAA
 
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rJMFF003I23+                                                  GTCGTAAAGTCAAACCNTTC
rJMFF037I14+          AGCTTCGAGAATGCTNGGAGATCAATTAGCTCTAGCCTGGGTCGTAAAGTCAAACCCTTC
                      ____________________________________________________________
consensus             AGCTTCGAGAATGCTNGGAGATCAATTAGCTCTAGCCTGGGTCGTAAAGTCAAACCCTTC
 
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rJMFF003I23+          ATTTGACGCAAAAAAGTTCACTAGAAGACAGCCATTTCTAGATAAAATTGATGGCGCTTC
rJMFF037I14+          ATTTGACGCAAAAAAGTTCACTAGAAGACAGCCATTTCTAGATAAAATTGATGGCGCTTC
                      ____________________________________________________________
consensus             ATTTGACGCAAAAAAGTTCACTAGAAGACAGCCATTTCTAGATAAAATTGATGGCGCTTC
 
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rJMFF003I23+          CATTTTATTTCTACCGTGTGCCTTGTACAATTGGACGCCACCAGAGGGTGCGGGTCAGTT
rJMFF037I14+          CATTTTATTTCTACCGTGTGCCTTGTACAATTGGACGCCACCAGAGGGTGCGGGTCAGTT
                      ____________________________________________________________
consensus             CATTTTATTTCTACCGTGTGCCTTGTACAATTGGACGCCACCAGAGGGTGCGGGTCAGTT
 
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rJMFF003I23+          TCATGGGATGCCCCTGGATGTTAAGGTAATTCATTTTAAGGGGTCAAGAAAACGACTCAT
rJMFF037I14+          TCATGGGATGCCCCTGGATGTTAAGGTAATTCATTTTAAGGGGTCAAGAAAACGACTCAT
                      ____________________________________________________________
consensus             TCATGGGATGCCCCTGGATGTTAAGGTAATTCATTTTAAGGGGTCAAGAAAACGACTCAT
 
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rJMFF003I23+          GCTGGAGTCTTGGAACTTCTTTAACTCATCATCGCTGGCATCGTCTGAGAAAATCTCTGA
rJMFF037I14+          GCTGGAGTCTTGGAACTTCTTTAACTCATCATCGCTGGCATCGTCTGAGAAAATCTCTGA
                      ____________________________________________________________
consensus             GCTGGAGTCTTGGAACTTCTTTAACTCATCATCGCTGGCATCGTCTGAGAAAATCTCTGA
 
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rJMFF003I23+          TATGCTATGCCTCATTGTAAGAAGTGGGCGGACAAAGTACGATTTCTAAGTTTGAAATTA
rJMFF037I14+          TATGCTATGCCTCATTGTAAGAAGTGGGCGGACAAAGTACGATTTCTAAGTTTGAAATTA
                      ____________________________________________________________
consensus             TATGCTATGCCTCATTGTAAGAAGTGGGCGGACAAAGTACGATTTCTAAGTTTGAAATTA
 
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rJMFF003I23+          ACAACGGATTGGATGCATCCAATCGTAAATTTCTGATCTGAACTGCCCGTTCTTCGGGAA
rJMFF037I14+          ACAACGGATTGGATGCATCCAATCGTAAATTTCTGATCTGAACTGCCCGTTCTTCGGGAA
                      ____________________________________________________________
consensus             ACAACGGATTGGATGCATCCAATCGTAAATTTCTGATCTGAACTGCCCGTTCTTCGGGAA
 
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rJMFF003I23+          GACTAGAGAACGCGTTTTGATGCCAAATGCAGAGCCAATCTTTACTGAAGAGTTACCATC
rJMFF037I14+          GACTAGAGAACGCGTTTTGATGCCAAATGCAGAGCCAATCTTTACTGAAGAGTTACCATC
                      ____________________________________________________________
consensus             GACTAGAGAACGCGTTTTGATGCCAAATGCAGAGCCAATCTTTACTGAAGAGTTACCATC
 
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rJMFF003I23+          CTTTTGCTTCATCACACTTCAACTGCTATTTCTTTGTTTTTGTTGCAAAACCATGTGAAG
rJMFF037I14+          CTTTTGCTTCATCACACTTCAACTGCTATTTCTTTGTTTTTGTTGCAAAACCATGTGAAG
                      ____________________________________________________________
consensus             CTTTTGCTTCATCACACTTCAACTGCTATTTCTTTGTTTTTGTTGCAAAACCATGTGAAG
 
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rJMFF003I23+          TGAAGGATGGATGCAATTCTTTTGTTGTATAAAACCTAGGAATCCTTGTACATTAATGGA
rJMFF037I14+          TGAAGGATGGATGCAATTCTTTTGTTGTATAAAACCTAGGAATCCTTGTACATTAATGGA
                      ____________________________________________________________
consensus             TGAAGGATGGATGCAATTCTTTTGTTGTATAAAACCTAGGAATCCTTGTACATTAATGGA
 
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rJMFF003I23+          ATCAAAGCAAGGCTTTTGAGGATTTGAGTGTCTCCAATCTCCAAACCTATGTAACCTTGT
rJMFF037I14+          ATCAAAGCAAGGCTTTTGAGGATTTGAGTGTCTCCAATCTCCAAACCTATGTAACCTTGT
                      ____________________________________________________________
consensus             ATCAAAGCAAGGCTTTTGAGGATTTGAGTGTCTCCAATCTCCAAACCTATGTAACCTTGT
 
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rJMFF003I23+          ACCGTGTGCCTTTGCAGCAGAATGTGGTTGGCCCCATGGAGGGTCGGTCATCAAGAAA  
rJMFF037I14+          ACCGTGTGCCTTTGCAGCAGAATGTGGTTGGCCCCATGGAGGGTCGGTCATCAAGAAATA
                      ____________________________________________________________
consensus             ACCGTGTGCCTTTGCAGCAGAATGTGGTTGGCCCCATGGAGGGTCGGTCATCAAGAAATA