Contig 005475:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF037I01Sequence716005475 (2)ref|XP_009768518.1|2e-45PREDICTED: F-box protein At1g30790-like [Nicotiana sylvestris]
JMSF008J14Sequence496015674ref|XP_009620908.1|1e-16PREDICTED: F-box protein At3g07870-like [Nicotiana tomentosiformis] ref|XP_00962751005475 (2)ref|XP_009768518.1|2e-53PREDICTED: F-box protein At1g30790-like [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF008J14+ TNGGATCAATCATTTTTCATACACCCGTTTCAGCTATTGGAGCAATGTATTGGC
                      ____________________________________________________________
consensus TNGGATCAATCATTTTTCATACACCCGTTTCAGCTATTGGAGCAATGTATTGGC
 
. : . : . : . : . : . :
rJMSF008J14+ TTCCTGAAAGATTCGGGTGCAATCATATTGTGTCACTGGGATATGATGATGAGAAATTCC
rJMFF037I01+ TGAAAGATTCGGGTGCAATCATATTGTGTCACTGGGATATGATGATGAGAAATTCC
                      ____________________________________________________________
consensus TTCCTGAAAGATTCGGGTGCAATCATATTGTGTCACTGGGATATGATGATGAGAAATTCC
 
. : . : . : . : . : . :
rJMSF008J14+ TTTCTATTCCTCTGCCAATCAGCAGCACCAAGAATGATCGCTTGGTTGAGGTTGGAGGGT
rJMFF037I01+ TTTCTATTCCTCTGCCAATCAGCAGCACCAAGAATGATCGCTTGGTTGAGGTTGGAGGGT
                      ____________________________________________________________
consensus TTTCTATTCCTCTGCCAATCAGCAGCACCAAGAATGATCGCTTGGTTGAGGTTGGAGGGT
 
. : . : . : . : . : . :
rJMSF008J14+ TATTGAGTTTTGTTACTCATGCAACCATGCACTTGATTCAGGTATGGATTTTGAGGAGGG
rJMFF037I01+ TATTGAGTTTTGTTACTCATGCAACCATGCACTTGATTCAGGTATGGATTTTGAGGAGGG
                      ____________________________________________________________
consensus TATTGAGTTTTGTTACTCATGCAACCATGCACTTGATTCAGGTATGGATTTTGAGGAGGG
 
. : . : . : . : . : . :
rJMSF008J14+ ACGGTGTAGGTGACAATTGGATAAAGCGTTATAGTATAAACAGGAACTATGATATTACTG
rJMFF037I01+ ACGGTGTAGGTGACAATTGGATAAAGCGTTATAGTATAAACAGGAACTATGATATTACTG
                      ____________________________________________________________
consensus ACGGTGTAGGTGACAATTGGATAAAGCGTTATAGTATAAACAGGAACTATGATATTACTG
 
. : . : . : . : . : . :
rJMSF008J14+ GATTGATCCCGTTTTGCACTTCGGGCTGTGAGATGGTGTTCAATAGACACAGGAAAAACT
rJMFF037I01+ GATTGATCCCGTTTTGCACTTCGGGCTGTGAGATGGTGTTCAATAGACACAGGAAAAACT
                      ____________________________________________________________
consensus GATTGATCCCGTTTTGCACTTCGGGCTGTGAGATGGTGTTCAATAGACACAGGAAAAACT
 
. : . : . : . : . : . :
rJMSF008J14+ TGTTATATGTTTACAATCTGGAAAGTGATGAGATGAAGGAGGTCAATCTTGACACTGAAA
rJMFF037I01+ TGTTATATGTTTACAATCTGGAAAGTGATGAGATGAAGGAGGTCAATCTTGACACTGAAA
                      ____________________________________________________________
consensus TGTTATATGTTTACAATCTGGAAAGTGATGAGATGAAGGAGGTCAATCTTGACACTGAAA
 
. : . : . : . : . : . :
rJMSF008J14+ CGATGAATTGGGAGGTCGAGCAAGATGATATGGAGTTTGAGGAAGAAGTAGATAACGGTG
rJMFF037I01+ CGATGAATTGGGAGGTCGAGCAAGATGATATGGAGTTTGAGGAAGAAGTAGATAACGGTG
                      ____________________________________________________________
consensus CGATGAATTGGGAGGTCGAGCAAGATGATATGGAGTTTGAGGAAGAAGTAGATAACGGTG
 
. : . : . : . : . : . :
rJMSF008J14+ AAGACTTCACGTTCTATATTCCTCATGTGAACTCCATCGTCTCTGGCAGTACTCCTAATC
rJMFF037I01+ AAGACTTCACGTTCTATATTCCTCATGTGAACTCCATCGTCTCTGGCAGTACTCCTAATC
                      ____________________________________________________________
consensus AAGACTTCACGTTCTATATTCCTCATGTGAACTCCATCGTCTCTGGCAGTACTCCTAATC
 
. : . : . : . : . : . :
rJMSF008J14+ GTCAATAGGAGAAAGTGATACATCCAGCTGTGTCTATCTGTCTGCACTTTATTACAAGTA
rJMFF037I01+ GTCAATAGGAGAAAGTGATACATCCAGCTGTGTCTATCTGTCTGCACTTTATTACAAGTA
                      ____________________________________________________________
consensus GTCAATAGGAGAAAGTGATACATCCAGCTGTGTCTATCTGTCTGCACTTTATTACAAGTA
 
. : . : . : . : . : . :
rJMSF008J14+ TGCTGTTGTTATTTCTGAATCTTGTTACGCTGTAAATAATAATTTGCAACTAGTCTAGAA
rJMFF037I01+ TGCTGTTGTTATTTCTGAATCTTGTTACGCTGTAAATAATAATTTGCAACTAGTCTAGAA
                      ____________________________________________________________
consensus TGCTGTTGTTATTTCTGAATCTTGTTACGCTGTAAATAATAATTTGCAACTAGTCTAGAA
 
. : . : . : . : . : . :
rJMSF008J14+ TGCTTAGAACCCTAGTTTAATTTTGCCGCTGTTATATTAGCTTTCAACTTATATTTCTCC
rJMFF037I01+ TGCTTAGAACCCTAGTTTAATTTTGCCGCTGTTATATTAGCTTTCAACTTATATTTCTCC
                      ____________________________________________________________
consensus TGCTTAGAACCCTAGTTTAATTTTGCCGCTGTTATATTAGCTTTCAACTTATATTTCTCC
 
. : . : . : . : . : . :
rJMSF008J14+ AATTGAAAGATAGGCAGGGAGGCTCTGTATGGATATT
rJMFF037I01+ AATTGAAAGATAGGCAGGGAGGCTCTGTATGGATATTTATGGTACTGATGATCATAACTA
                      ____________________________________________________________
consensus AATTGAAAGATAGGCAGGGAGGCTCTGTATGGATATTTATGGTACTGATGATCATAACTA