clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF031K12 | Sequence | 604 | 005462 (5) | ref|XP_009605012.1| | 248 | PREDICTED: uncharacterized protein LOC104099663 [Nicotiana tomentosiformis] ref| | 734 | 005462 (5) | ref|XP_009605012.1| | 213 | PREDICTED: uncharacterized protein LOC104099663 [Nicotiana tomentosiformis] ref| |
JMFF032G02 | Sequence | 492 | 005462 (5) | ref|XP_009605012.1| | 214 | PREDICTED: uncharacterized protein LOC104099663 [Nicotiana tomentosiformis] ref| | 588 | 005462 (5) | ref|XP_009605012.1| | 247 | PREDICTED: uncharacterized protein LOC104099663 [Nicotiana tomentosiformis] ref| |
JMFN033E10 | Sequence | 627 | 005462 (5) | ref|XP_009605012.1| | 248 | PREDICTED: uncharacterized protein LOC104099663 [Nicotiana tomentosiformis] ref| |
This contig is upended
. : . : . : . : . : . :
rJMFF031K12- ATTAGACTACTACAAGTTGGTAAAGTTAATACA
____________________________________________________________
consensus ATTAGACTACTACAAGTTGGTAAAGTTAATACA
. : . : . : . : . : . :
rJMFF031K12- TCACAAATTCGCAACTATGACAGACAAAATCTGATGATCTGCTAATATGAATGAAACAGG
____________________________________________________________
consensus TCACAAATTCGCAACTATGACAGACAAAATCTGATGATCTGCTAATATGAATGAAACAGG
. : . : . : . : . : . :
JMFN033E10+ TTTTTTTTCGCCTCAAAACCATGAATTATAGA
rJMFF031K12- TAAACATAATTATACTAAAATGGCTTCTTTTTTTTTCCCCTCAAAACCATGAATTATAGA
JMFF031K12+ CCTCAAAACCATGAATTATAGA
____________________________________________________________
consensus TAAACATAATTATACTAAAATGGCTTCTTTTTTTTTCGCCTCAAAACCATGAATTATAGA
. : . : . : . : . : . :
JMFN033E10+ AGCAAATGAACACTCTTATGTGATCATACCTATAGGCTATAGCTCATTCCCTGACCAACC
rJMFF031K12- AGCAAATGAACACTCTTATGTGATCATACCTATAGGCTATAGCTCATTCCCTGACCAACC
JMFF031K12+ AGCAAATGAACACTCTTATGTGATCATACCTATAGGCTATAGCTCATTCCCTGACCAACC
rJMFF032G02- CTCTTATGTGATCATACCTATAGGCTATAGCTCATTCCCTGACCAACC
____________________________________________________________
consensus AGCAAATGAACACTCTTATGTGATCATACCTATAGGCTATAGCTCATTCCCTGACCAACC
. : . : . : . : . : . :
JMFN033E10+ CATTTGGCGGGCTCGTTTCTCCCACAGATCTGTCAACTTCTTTTCCTTGCGGAGCAGAAC
rJMFF031K12- CATTTGGCGGGCTCGTTTCTCCCACAGATCTGTCAACTTCTTTTCCTTGCGGAGCANAAC
JMFF031K12+ CATTTGGCGGGCTCGTTTCTCCCACAGATCTGTCAACTTCTTTTCCTTGCGGAGCAGAAC
JMFF032G02+ GCGGAGCAGAAC
rJMFF032G02- CATTTGGCGGGCTCGTTTCTCCCACAGATCTGTCAACTTCTTTTCCTTGCGGAGCAGAAC
____________________________________________________________
consensus CATTTGGCGGGCTCGTTTCTCCCACAGATCTGTCAACTTCTTTTCCTTGCGGAGCAGAAC
. : . : . : . : . : . :
JMFN033E10+ TTCGGCCCGTTCTCTTCCCACCTCGCAAGTTTCTGTGGCGGTATTACACTTCTCCGACTC
rJMFF031K12- TTCGGCCCGTTCTCTTCCCACCTCGCAAGTTTCTGTGGCGGTATTACACTTCTCCGACTC
JMFF031K12+ TTCGGCCCGTTCTCTTCCCACCTCGCAAGTTTCTGTGGCGGTATTACACTTCTCCGACTC
JMFF032G02+ TTCGGCCCGTTCTCTTCCCACCTCGCAAGTTTCTGTGGCGGTATTACACTTCTCCGACTC
rJMFF032G02- TTCGGCCCGTTCTCTTCCCACCTCGCAAGTTTCTGTGGCGGTATTACACTTCTCCGACTC
____________________________________________________________
consensus TTCGGCCCGTTCTCTTCCCACCTCGCAAGTTTCTGTGGCGGTATTACACTTCTCCGACTC
. : . : . : . : . : . :
JMFN033E10+ CTTCTGGTATTCGGAAGCTAACCTTCTGGCTTCCGAGACAGTAATGTTCATATGATGGGT
rJMFF031K12- CTTCTGGTATTCGGAAGCTAACCTTCTGGCTTCCGAGACAGTAATGTTCATATGATGGGT
JMFF031K12+ CTTCTGGTATTCGGAAGCTAACCTTCTGGCTTCCGAGACAGTAATGTTCATATGATGGGT
JMFF032G02+ CTTCTGGTATTCGGAAGCTAACCTTCTGGCTTCCGAGACAGTAATGTTCATATGATGGGT
rJMFF032G02- CTTCTGGTATTCGGAAGCTAACCTTCTGGCTTCCGAGACAGTAATGTTCATATGATGGGT
____________________________________________________________
consensus CTTCTGGTATTCGGAAGCTAACCTTCTGGCTTCCGAGACAGTAATGTTCATATGATGGGT
. : . : . : . : . : . :
JMFN033E10+ GCGTTCTTTGTCCACCGTTTCCTGCAGCTTTAGCTCTTCTGATAATAAATCCACATACTG
rJMFF031K12- GCGTTCTTTGTCCACCGTTTCCTGCAGCTTTAGCTCTTCTGATAATAAATCCACATACTG
JMFF031K12+ GCGTTCTTTGTCCACCGTTTCCTGCAGCTTTAGCTCTTCTGATAATAAATCCACATACTG
JMFF032G02+ GCGTTCTTTGTCCACCGTTTCCTGCAGCTTTAGCTCTTCTGATAATAAATCCACATACTG
rJMFF032G02- GCGTTCTTTGTCCACCGTTTCCTGCAGCTTTAGCTCTTCTGATAATAAATCCACATACTG
____________________________________________________________
consensus GCGTTCTTTGTCCACCGTTTCCTGCAGCTTTAGCTCTTCTGATAATAAATCCACATACTG
. : . : . : . : . : . :
JMFN033E10+ CTTCTCCATCTCTTCCTTCAGATCCGGGTCATCTTTCCCACAGTCTCTAACTGTAAGATT
rJMFF031K12- CTTCTCCATCTCTTCCTTCANATCCGGGTCATCTTTCCCACAGTCTCTAACTGTAANATT
JMFF031K12+ CTTCTCCATCTCTTCCTTCAGATCCGGGTCATCTTTCCCACAGTCTCTAACTGTAAGATT
JMFF032G02+ CTTCTCCATCTCTTCCTTCAGATCCGGGTCATCTTTCCCACAGTCTCTAACTGTAAGATT
rJMFF032G02- CTTCTCCATCTCTTCCTTCAGATCCGGGTCATCTTTCCCACAGTCTCTAACTGTAAGATT
____________________________________________________________
consensus CTTCTCCATCTCTTCCTTCAGATCCGGGTCATCTTTCCCACAGTCTCTAACTGTAAGATT
. : . : . : . : . : . :
JMFN033E10+ GGCCAGACCGGGAGCAACATCGAGAAGGGAAAGAGGTGGAGAGCAGTGACATTTGCAAGG
rJMFF031K12- GGCCANACCGGGAGCAACATCGAGAAGGGAAAGAGGTGGAGAGCAGTGACATTTGCAAGG
JMFF031K12+ GGCCAGACCGGGAGCAACATCGAGAAGGGAAAGAGGTGGAGAGCAGTGACATTTGCAAGG
JMFF032G02+ GGCCAGACCGGGAGCAACATCGAGAAGGGAAAGAGGTGGAGAGCAGTGACATTTGCAAGG
rJMFF032G02- GGCCAGACCGGGAGCAACATCGAGAAGGGAAAGAGGTGGAGAGCAGTGACATTTGCAAGG
____________________________________________________________
consensus GGCCAGACCGGGAGCAACATCGAGAAGGGAAAGAGGTGGAGAGCAGTGACATTTGCAAGG
. : . : . : . : . : . :
JMFN033E10+ AGGACAAGAGGCTTTGAGCTTTAGAGCCTTCTTGAATTTCCAGTAAAGGGCAGGCCCAGA
rJMFF031K12- AGGACAAGAGGCTTTGAGCTTTAGAGCCTTCTTGAATTTCCAGTAAAGGGCAGGCCCAGA
JMFF031K12+ AGGACAAGAGGCTTTGAGCTTTAGAGCCTTCTTGAATTTCCAGTAAAGGGCAGGCCCAGA
JMFF032G02+ AGGACAAGAGGCTTTGAGCTTTAGAGCCTTCTTGAATTTCCAGTAAAGGGCAGGCCCAGA
rJMFF032G02- AGGACAAGAGGCTTTGAGCTTTAGAGCCTTCTTGAATTTCCAGTAAAGGGCAGGCCCAGA
____________________________________________________________
consensus AGGACAAGAGGCTTTGAGCTTTAGAGCCTTCTTGAATTTCCAGTAAAGGGCAGGCCCAGA
. : . : . : . : . : . :
JMFN033E10+ TACACACAGAGCTGAAACCACAGCAAAGATCACCAAGCAACATCTTAAGCAAGTCCAAGA
rJMFF031K12- TACACACAGAGCTGAAACCACAGCAAAGATCACCAAGCAACATCTTAAGCAAGTCCAAGA
JMFF031K12+ TACACACAGAGCTGAAACCACAGCAAAGATCACCAAGCAACATCTTAAGCAAGTCCAAGA
JMFF032G02+ TACACACAGAGCTGAAACCAAAGCAAAGATCACCAAGCAACATCTTAAGCAAGTCCAAGA
rJMFF032G02- TACACACAGAGCTGAAACCAAAGCAAAGATCACCAAGCAACATCTTAAGCAAGTCCAAGA
____________________________________________________________
consensus TACACACAGAGCTGAAACCACAGCAAAGATCACCAAGCAACATCTTAAGCAAGTCCAAGA
. : . : . : . : . : . :
JMFN033E10+ TCTACTTGACATCTCTCCCTCTACCAC
rJMFF031K12- TCTACTTGACATCTCTCCCTCTACCACTCTCTCTCTCTCTC
JMFF031K12+ TCTACTTGACATCTCTCCCTCTACCACTCTCTCTCTCTCTC
JMFF032G02+ TCTACTTGACATCTCTC
rJMFF032G02- TCTACTTGACATCTCTCCCTCTACCACTCTCTCTCTCTCTCTCTCTCTCTCCAAGAAATT
____________________________________________________________
consensus TCTACTTGACATCTCTCCCTCTACCACTCTCTCTCTCTCTCTCTCTCTCTCCAAGAAATT