Contig 005441:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF027O20Sequence598005441 (8)ref|XP_009615797.1|4e-72PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like688005441 (8)ref|XP_009615797.1|8e-76PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like
JMFN025A18Sequence639005441 (8)ref|XP_009615797.1|3e-74PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like
JMSF007B13Sequence670005441 (8)ref|XP_009615797.1|1e-77PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like
JMSF039P12Sequence685005441 (8)ref|XP_009615797.1|8e-79PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like810005441 (8)ref|XP_009615797.1|3e-84PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like
JMSF046I18Sequence775005441 (8)ref|XP_009615797.1|4e-82PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like798005441 (8)ref|XP_009615797.1|3e-84PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF027O20-                                                         TTTGGAACGTCTGC
JMSF039P12-                                                         TTTGGAACGTCTGC
JMSF046I18-                                                 GATCCGAATTTGGAACGTCTGC
rJMSF039P12+                                                                GTCTGC
                      ____________________________________________________________
consensus                                                   GATCCGAATTTGGAACGTCTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF027O20-           AGGGTAGATTCTGAGAAAAGCATTGGGACTAACCCAACCATAGGG-TTTTAGCCCTTTGA
JMSF039P12-           AGGGTAGATTCTGAGAAAAGCATTGGGACTAACCCAACCATAGGG-TTTTAGCCCTTTGA
JMSF046I18-           AGGGTAGATTCTGAGAAAAGCATTGGGACTAACCCAACCATAGGG-TTTTAGCCCTTTGA
JMFN025A18-                   TTCTGAGAAAAGCATTGGGACTAACCCAACCATAGGG-TTTTAGCCCTTTGA
rJMSF039P12+          AGGGTAGATTCTGAGAAAAGCATTGGGACTAACCCAACCATAGGG-TTTTAGCCCTTTGA
rJMSF046I18+                                  GGGACTAACCCAACCATAGGGTTTTTAGCCCTTTGA
                      ____________________________________________________________
consensus             AGGGTAGATTCTGAGAAAAGCATTGGGACTAACCCAACCATAGGG-TTTTAGCCCTTTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF027O20-           TTCACAGAAATGGCGATGACACCGGCGAATTCTCCCAATTCCGGCTCCGACTCCGATATC
JMSF039P12-           TTCACAGAAATGGCGATGACACCGGCGAATTCTCCCAATTCCGGCTCCGACTCCGATATC
JMSF046I18-           TTCACAGAAATGGCGATGACACCGGCGAATTCTCCCAATTCCGGCTCCGACTCCGATATC
rJMSF007B13+                                                                   ATC
JMFN025A18-           TTCACAGAAATGGCGATGACACCGGCGAATTCTCCCAATTCCGGCTCCGACTCCGATATC
rJMSF039P12+          TTCACAGAAATGGCGATGACACCGGCGAATTCTCCCAATTCCGGCTCCGACTCCGATATC
rJMSF046I18+          TTCACAGAAATGGCGATGACACCGGCGAATTCTCCCAATTCCGGCTCCGACTCCGATATC
                      ____________________________________________________________
consensus             TTCACAGAAATGGCGATGACACCGGCGAATTCTCCCAATTCCGGCTCCGACTCCGATATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF027O20-           GACAACACTCCGACGCCGAGTTTGAACTCTAAAGCCGACCCGAATGCCAACGTCACTCCC
JMSF039P12-           GACAACACTCCGACGCCGAGTTTGAACTCTAAAGCCGACCCGAATGCCAACGTCACTCCC
JMSF046I18-           GACAACACTCCGACGCCGAGTTTGAACTCTAAAGCCGACCCGAATGCCAACGTCACTCCC
rJMSF007B13+          GACAACACTCCGACGCCGAGTTTGAACTCTAAAGCCGACCCGAATGCCAACGTCACTCCC
JMFN025A18-           GACAACACTCCGACGCCGAGTTTGAACTCTAAAGCCGACCCGAATGCCAACGTCACTCCC
rJMSF039P12+          GACAACACTCCGACGCCGAGTTTGAACTCTAAAGCCGACCCGAATGCCAACGTCACTCCC
rJMSF046I18+          GACAACACTCCGACGCCGAGTTTGAACTCTAAAGCCGACCCGAATGCCAACGTCACTCCC
rJMFF027O20+                                        AAAGCCGACCCGAATGCCAACGTCACTCCC
                      ____________________________________________________________
consensus             GACAACACTCCGACGCCGAGTTTGAACTCTAAAGCCGACCCGAATGCCAACGTCACTCCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF027O20-           GACTCGTTGAGTCCCACCAATCCCTCTAGCCCGCCCGTCGTCTGCCTGTACAGGTTCGCC
JMSF039P12-           GACTCGTTGAGTCCCACCAATCCCTCTAGCCCGCCCGTCGTCTGCCTGTACAGGTTCGCC
JMSF046I18-           GACTCGTTGAGTCCCACCAATCCCTCTAGCCCGCCCGTCGTCTGCCTGTACAGGTTCGCC
rJMSF007B13+          GACTCGTTGAGTCCCACCAATCCCTCTAGCCCGCCCGTCGTCTGCCTGTACAGGTTCGCC
JMFN025A18-           GACTCGTTGAGTCCCACCAATCCCTCTAGCCCGCCCGTCGTCTGCCTGTACAGGTTCGCC
rJMSF039P12+          GACTCGTTGAGTCCCACCAATCCCTCTAGCCCGCCCGTCGTCTGCCTGTACAGGTTCGCC
rJMSF046I18+          GACTCGTTGAGTCCCACCAATCCCTCTAGCCCGCCCGTCGTCTGCCTGTACAGGTTCGCC
rJMFF027O20+          GACTCGTTGAGTCCCACCAATCCCTCTAGCCCGCCCGTCGTCTGCCTGTACAGGTTCGCC
                      ____________________________________________________________
consensus             GACTCGTTGAGTCCCACCAATCCCTCTAGCCCGCCCGTCGTCTGCCTGTACAGGTTCGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF027O20-           GCAGACTCCTTCGGTGGGGCTTTTATGGGCTCCATTTTTGGATACGGTTCAGGATTGCTA
JMSF039P12-           GCAGACTCCTTCGGTGGGGCTTTTATGGGCTCCATTTTTGGATACGGTTCAGGATTGCTA
JMSF046I18-           GCAGACTCCTTCGGTGGGGCTTTCATGGGCTCCATTTTTGGATACGGTTCAGGATTGCTA
rJMSF007B13+          GCAGACTCCTTCGGTGGGGCTTTTATGGGCTCCATTTTTGGATACGGTTCAGGATTGCTA
JMFN025A18-           GCAGACTCCTTCGGTGGGGCTTTTATGGGCTCCATTTTTGGATACGGTTCAGGATTGCTA
rJMSF039P12+          GCAGACTCCTTCGGTGGGGCTTTTATGGGCTCCATTTTTGGATACGGTTCAGGATTGCTA
rJMSF046I18+          GCAGACTCCTTCGGTGGGGCTTTCATGGGCTCCATTTTTGGATACGGTTCAGGATTGCTA
rJMFF027O20+          GCAGACTCCTTCGGTGGGGCTTTTATGGGCTCCATTTTTGGATACGGTTCAGGATTGCTA
                      ____________________________________________________________
consensus             GCAGACTCCTTCGGTGGGGCTTTTATGGGCTCCATTTTTGGATACGGTTCAGGATTGCTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF027O20-           AGGAAGAAGGGACTTAAAGGATCTTTTGCAGAGGCAGGATCATCTGCAAAGACATTTGCA
JMSF039P12-           AGGAAGAAGGGACTTAAAGGATCTTTTGCAGAGGCAGGATCATCTGCAAAGACATTTGCA
JMSF046I18-           AGGAAGAAGGGACTTAAAGGATCTTTTGCAGAGGCAGGATCATCTGCAAAGACATTTGCA
rJMSF007B13+          AGGAAGAAGGGACTTAAAGGATCTTTTGCAGAGGCAGGATCATCTGCAAAGACATTTGCA
JMFN025A18-           AGGAAGAAGGGACTTAAAGGATCTTTTGCAGAGGCAGGATCATCTGCAAAGACATTTGCA
rJMSF039P12+          AGGAAGAAGGGACTTAAAGGATCTTTTGCAGAGGCAGGATCATCTGCAAAGACATTTGCA
rJMSF046I18+          AGGAAGAAGGGACTTAAAGGATCTTTTGCAGAGGCAGGATCATCTGCAAAGACATTTGCA
rJMFF027O20+          AGGAAGAAGGGACTTAAAGGATCTTTTGCAGAGGCAGGATCATCTGCAAAGACATTTGCA
                      ____________________________________________________________
consensus             AGGAAGAAGGGACTTAAAGGATCTTTTGCAGAGGCAGGATCATCTGCAAAGACATTTGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF027O20-           GTATTATCGGGAGTTCACAGTGTGGTTGTTTGCTTTCTTAAGAGGCTGCGGGGAAAAGAT
JMSF039P12-           GTATTATCGGGAGTTCACAGTGTGGTTGTTTGCTTTCTTAAGAGGCTGCGGGGAAAAGAT
JMSF046I18-           GTATTATCGGGAGTTCACAGTGTGGTTGTTTGCTTTCTTAAGAGGCTGCGGGGAAAAGAT
rJMSF007B13+          GTATTATCGGGAGTTCACAGTGTGGTTGTTTGCTTTCTTAAGAGGCTGCGGGGAAAAGAT
JMFN025A18-           GTATTATCGGGAGTTCACAGTGTGGTTGTTTGCTTTCTTAAGAGGCTGCGGGGAAAAGAT
rJMSF039P12+          GTATTATCGGGAGTTCACAGTGTGGTTGTTTGCTTTCTTAAGAGGCTGCGGGGAAAAGAT
rJMSF046I18+          GTATTATCGGGAGTTCACAGTGTGGTTGTTTGCTTTCTTAAGAGGCTGCGGGGAAAAGAT
rJMFF027O20+          GTATTATCGGGAGTTCACAGTGTGGTTGTTTGCTTTCTTAAGAGGCTGCGGGGAAAAGAT
                      ____________________________________________________________
consensus             GTATTATCGGGAGTTCACAGTGTGGTTGTTTGCTTTCTTAAGAGGCTGCGGGGAAAAGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF027O20-           GATGTAATTAATGCTGGAGTAGCTGGATGTTGCACTGGTCTTGCTCTAAGTTTTCCAGGT
JMSF039P12-           GATGTAATTAATGCTGGAGTAGCTGGATGTTGCACTGGTCTTGCTCTAAGTTTTCCAGGT
JMSF046I18-           GATGTAATTAATGCTGGAGTAGCTGGATGTTGCACTGGTCTTGCTCTAAGTTTTCCAGGT
rJMSF007B13+          GATGTAATTAATGCTGGAGTAGCTGGATGTTGCACTGGTCTTGCTCTAAGTTTTCCAGGT
JMFN025A18-           GATGTAATTAATGCTGGAGTAGCTGGATGTTGCACTGGTCTTGCTCTAAGTTTTCCAGGT
rJMSF039P12+          GATGTAATTAATGCTGGAGTAGCTGGATGTTGCACTGGTCTTGCTCTAAGTTTTCCAGGT
rJMSF046I18+          GATGTAATTAATGCTGGAGTAGCTGGATGTTGCACTGGTCTTGCTCTAAGTTTTCCAGGT
rJMFF027O20+          GATGTAATTAATGCTGGAGTAGCTGGATGTTGCACTGGTCTTGCTCTAAGTTTTCCAGGT
                      ____________________________________________________________
consensus             GATGTAATTAATGCTGGAGTAGCTGGATGTTGCACTGGTCTTGCTCTAAGTTTTCCAGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF027O20-           GCACCTCAGGCTCTACTACAGAGCTGCCTCACTTTTGGTGCATTTTCCTTCGTTATCGAA
JMSF039P12-           GCACCTCAGGCTCTACTACAGAGCTGCCTCACTTTTGGTGCATTTTCCTTCGTTATCGAA
JMSF046I18-           GCACCTCAGGCTCTACTACAGAGCTGCCTCACTTTTGGTGCATTTTCCTTCGTTATCGAA
rJMSF007B13+          GCACCTCAGGCTCTACTACAGAGCTGCCTCACTTTTGGTGCATTTTCCTTCGTTATCGAA
JMFN025A18-           GCACCTCAGGCTCTACTACAGAGCTGCCTCACTTTTGGTGCATTTTCCTTCGTTATCGAA
rJMSF039P12+          GCACCTCAGGCTCTACTACAGAGCTGCCTCACTTTTGGTGCATTTTCCTTCGTTATCGAA
rJMSF046I18+          GCACCTCAGGCTCTACTACAGAGCTGCCTCACTTTTGGTGCATTTTCCTTCGTTATCGAA
rJMFF027O20+          GCACCTCAGGCTCTACTACAGAGCTGCCTCACTTTTGGTGCATTTTCCTTCGTTATCGAA
                      ____________________________________________________________
consensus             GCACCTCAGGCTCTACTACAGAGCTGCCTCACTTTTGGTGCATTTTCCTTCGTTATCGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFF027O20-           GGCCTTAACAAGCAGCAGCCTGCATTAGCACTGCCCGCTCCAT                 
JMSF039P12-           GGCCTTAACAAGCAGCAGCCTGCATTAGCACTGCCCGCTCCATTAGGTCTCAGAAGCAGC
JMSF046I18-           GGCCTTAACAAGCAGCAGCCTGCATTAGCACTGCCCGCTCCATTAGGTCTCAGAAGCAGC
rJMSF007B13+          GGCCTTAACAAGCAGCAGCCTGCATTAGCACTGCCCGCTCCATTAGGTCTCAGAAGCAGC
JMFN025A18-           GGCCTTAACAAGCAGTAGCCTGCATTAGCACTGCCCGCTCCATTAGGTCTCAGAAGCAGC
rJMSF039P12+          GGCCTTAACAAGCAGCAGCCTGCATTAGCACTGCCCGCTCCATTAGGTCTCAGAAGCAGC
rJMSF046I18+          GGCCTTAACAAGCAGCAGCCTGCATTAGCACTGCCCGCTCCATTAGGTCTCAGAAGCAGC
rJMFF027O20+          GGCCTTAACAAGCAGCAGCCTGCATTAGCACTGCCCGCTCCATTAGGTCTCAGAAGCAGC
                      ____________________________________________________________
consensus             GGCCTTAACAAGCAGCAGCCTGCATTAGCACTGCCCGCTCCATTAGGTCTCAGAAGCAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039P12-           CAACACCCCGCCCTCCTTCCCCTATCATTCCCTCTACCAAACGAGCTTAAGGAGTCTTTC
JMSF046I18-           CAACACCCCGCCCTCCTTCCCCTATCATTCCCTCTACCAAACGAGCTTAAGGAGTCTTTC
rJMSF007B13+          CAACACCCCGCCCTCCTTCCCCTATCATTCCCTCTACCAAACGAGCTTAAGGAGTCTTTC
JMFN025A18-           CAACACCCCGCCCTCCTTCCCCTATCATTCCCTCTACCAAACGAGCTT            
rJMSF039P12+          CAACACCCCGCCCTCCTTCCCCTATCATTCCCTCTACCAAACGAGCTTAAGGAGTCTTTC
rJMSF046I18+          CAACACCCCGCCCTCCTTCCCCTATCATTCCCTCTACCAAACGAGCTTAAGGAGTCTTTC
rJMFF027O20+          CAACACCCCGCCCTCCTTCCCCTATCATTCCCTCTACCAAACGAGCTTAAGGAGTCTTTC
                      ____________________________________________________________
consensus             CAACACCCCGCCCTCCTTCCCCTATCATTCCCTCTACCAAACGAGCTTAAGGAGTCTTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF039P12-           TCTTCCT                                                     
JMSF046I18-           TCTTCCTTCTGCCACTCCCTTAAAAGACACGGGNAAGAACAATAATGCCCGTCGCTAGTT
rJMSF007B13+          TCTTCCTTCTGCCACTCCCTTAAAAGACACGGG-AAGAACAATAATGCCCGTCGCTAGTT
rJMSF039P12+          TCTTCCTTCTGCCACTCCCTTAAAAGACACGGG-AAGAACAATAATGCCCGTCGCTAGTT
rJMSF046I18+          TCTTCCTTCTGCCACTCCCTTAAAAGACACGGG-AAGAACAATAATGCCCGTCGCTAGTT
rJMFF027O20+          TCTTCCTTCTGCCACTCCCTTAAAAGACACGGG-AAGAACAATAATGCCCGTCGCTAGTT
                      ____________________________________________________________
consensus             TCTTCCTTCTGCCACTCCCTTAAAAGACACGGG-AAGAACAATAATGCCCGTCGCTAGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF046I18-           TANATTAATAGTTACTTCTT-ACGTTGAACGTTTA                         
rJMSF007B13+          TAGATTAATAGTTACTTCTTAACGTTGAACGTTTATTTGGAATCTCGAGATAAACTTGTA
rJMSF039P12+          TAGATTAATAGTTACTTCTT-ACGTTGAACGTTTATTTGGAATCTCGAGATAAACTTGTA
rJMSF046I18+          TAGATTAATAGTTACTTCTT-ACGTTGAACGTTTATTTGGAATCTCGAGATAAACTTGTA
rJMFF027O20+          TAGATTAATAGTTACTTCTT-ACGTTGAACGTTTATTTGGAATCTCGAGATAAACTTGTA
                      ____________________________________________________________
consensus             TAGATTAATAGTTACTTCTT-ACGTTGAACGTTTATTTGGAATCTCGAGATAAACTTGTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF007B13+          AGGCTTTG                                                    
rJMSF039P12+          AGGCTTTGTGTATCTTAAACTTCTT                                   
rJMSF046I18+          AGGCTTTGTGTATCTTAAACTTCTT                                   
rJMFF027O20+          AGGCTTTGTGTATCTTAAACTTCTTTGCTGCTTTAGTGATTGATGATGGAATTTTCACAT
                      ____________________________________________________________
consensus             AGGCTTTGTGTATCTTAAACTTCTTTGCTGCTTTAGTGATTGATGATGGAATTTTCACAT