Contig 005439:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF002D06Sequence565000393 (6)ref|XP_009790737.1|216PREDICTED: transmembrane 9 superfamily member 4 [Nicotiana sylvestris]695005439 (3)ref|XP_009602688.1|280PREDICTED: transmembrane 9 superfamily member 4 [Nicotiana tomentosiformis]
JMFF027K23Sequence681005439 (3)ref|XP_009602688.1|284PREDICTED: transmembrane 9 superfamily member 4 [Nicotiana tomentosiformis]
JMFF027M07Sequence531000393 (6)ref|XP_009790737.1|213PREDICTED: transmembrane 9 superfamily member 4 [Nicotiana sylvestris]627005439 (3)gb|AEW08260.1|1e-47hypothetical protein 2_4562_01, partial [Pinus radiata] gb|AFG69277.1| hypotheti

Alignment

This contig is upended


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rJMFF027K23+                CCAGATTCCTAGGGAGATCCCAGCACGNAAATATCCATCATGGCTTCTTGTTCT
rJMFF002D06+              ANCCAGATTCCTAGGGAGATCCCAGCACGCAAATATCCATCATGGCTTCTTGTTCT
                      ____________________________________________________________
consensus                 ANCCAGATTCCTAGGGAGATCCCAGCACGCAAATATCCATCATGGCTTCTTGTTCT
 
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rJMFF027K23+          TGGGGCTGGAACTCTTCCTTTCGGAACCCTCTTTATTGAGCTTTTCTTTATCCTCTCTAG
rJMFF002D06+          TGGGGCTGGAACTCTTCCTTTCGGAACCCTCTTTATTGAGCTTTTCTTTATCCTCTCTAG
                      ____________________________________________________________
consensus             TGGGGCTGGAACTCTTCCTTTCGGAACCCTCTTTATTGAGCTTTTCTTTATCCTCTCTAG
 
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rJMFF027K23+          TATCTGGTTTGGACGGTTCTATTATGTCTTTGGATTTCTGCTCATTGTCCTCCTCCTGTT
rJMFF002D06+          TATCTGGTTTGGACGGTTCTATTATGTCTTTGGATTTCTGCTCATTGTCCTCCTCCTGTT
                      ____________________________________________________________
consensus             TATCTGGTTTGGACGGTTCTATTATGTCTTTGGATTTCTGCTCATTGTCCTCCTCCTGTT
 
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rJMFF027K23+          GGTGATCGTTTGTGCGGAAGTTTCTGTTGTCCTCACTTACATGCATCTTTGTGTTGAGGA
rJMFF002D06+          GGTGATCGTTTGTGCGGAAGTTTCTGTTGCCCTCACTTACATGCATCTTTGTGTTGAGGA
rJMFF027M07+                                           CACTTACATGCATCTTTGTGTTGAGGA
                      ____________________________________________________________
consensus             GGTGATCGTTTGTGCGGAAGTTTCTGTTGTCCTCACTTACATGCATCTTTGTGTTGAGGA
 
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rJMFF027K23+          CTGGATGTGGTGGTGGAAAGCATTCTTTGCCTCAGGCTCTGTTGCCCTCTATGTGTTCTT
rJMFF002D06+          CTGGATGTGGTGGTGGAAAGCATTCTTTGCCTCAGGCTCTGTTGCCCTCTATGTGTTCTT
rJMFF027M07+          CTGGATGTGGTGGTGGAAAGCATTCTTTGCCTCAGGCTCTGTTGCCCTCTATGTGTTCTT
                      ____________________________________________________________
consensus             CTGGATGTGGTGGTGGAAAGCATTCTTTGCCTCAGGCTCTGTTGCCCTCTATGTGTTCTT
 
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rJMFF027K23+          ATACTCCGTGAATTACCTTGTGTTCGATCTCCAGAGTCTGAGCGGGCCAGTCTCTGCCAT
rJMFF002D06+          ATACTCCGTGAATTACCTTGTGTTCGATCTCCAGAGTCTGAGCGGGCCAGTCTCTGCCAT
rJMFF027M07+          ATACTCCGTGAATTACCTTGTGTTCGATCTCCAGAGTCTGAGCGGGCCAGTCTCTGCCAT
                      ____________________________________________________________
consensus             ATACTCCGTGAATTACCTTGTGTTCGATCTCCAGAGTCTGAGCGGGCCAGTCTCTGCCAT
 
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rJMFF027K23+          ACTTTATATCGGCTACTCTTTGTTAATGGCAGTTGCAATCATGCTTGCTACTGGCTCTAT
rJMFF002D06+          ACTTTATATCGGCTACTCTTTGTTAATGGCAGTTGCAATCATGCTTGCTACTGGCTCTAT
rJMFF027M07+          ACTTTATATCGGCTACTCTTTGTTAATGGCAGTTGCAATCATGCTTGCTACTGGCTCTAT
                      ____________________________________________________________
consensus             ACTTTATATCGGCTACTCTTTGTTAATGGCAGTTGCAATCATGCTTGCTACTGGCTCTAT
 
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rJMFF027K23+          CGGTTTCCTGACATCATTCTACTTTGTCCATTACCTCTTCTCGTCAGTGAAGATTGACTG
rJMFF002D06+          CGGTTTCCTGACATCATTCTACTTTGTCCATTACCTCTTCTCGTCAGTGAAGATTGACTG
rJMFF027M07+          CGGTTTCCTGACATCATTCTACTTTGTCCATTACCTCTTCTCGTCAGTGAAGATTGACTG
                      ____________________________________________________________
consensus             CGGTTTCCTGACATCATTCTACTTTGTCCATTACCTCTTCTCGTCAGTGAAGATTGACTG
 
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rJMFF027K23+          AGTAATTAGATAGCAATTATATTGTTATTGGGTAGTAGTTAAGGAGCTTTGCTCATGCAT
rJMFF002D06+          AGTAATTAGATAGCAATTATATTGTTATTGGGTAGTAGTTAAGGAGCTTTGCTCATGCAT
rJMFF027M07+          AGTAATTAGATAGCAATTATATTGTTATTGGGTAGTAGTTAAGGAGCTTTGCTCATGCAT
                      ____________________________________________________________
consensus             AGTAATTAGATAGCAATTATATTGTTATTGGGTAGTAGTTAAGGAGCTTTGCTCATGCAT
 
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rJMFF027K23+          AGTTGGAAGTTTTCTTGTTCCCCCCGCTTTTCATTTACACACAGACTGACAGATGCTCCG
rJMFF002D06+          AGTTGGAAGTTTTCTTGTTCCCCCCGCTTTTCATTTACACACAGACTGACAGATGCTCCG
rJMFF027M07+          AGTTGGAAGTTTTCTTGTTCCCCCCGCTTTTCATTTACACACAGACTGACAGATGCTCCG
                      ____________________________________________________________
consensus             AGTTGGAAGTTTTCTTGTTCCCCCCGCTTTTCATTTACACACAGACTGACAGATGCTCCG
 
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rJMFF027K23+          AATCTCAGGTTGCTATGAATTTGTTTTCTTGGCCTTTATGTTTTTGCAGCTATAGATTTA
rJMFF002D06+          AATCTCAGGTTGCTATGAATTTGTTTTCTTGGCCTTTATGTTTTTGCAGCTATAGATTTA
rJMFF027M07+          AATCTCAGGTTGCTATGAATTTGTTTTCTTGGCCTTTATGTTTTTGCAGCTATAGATTTA
                      ____________________________________________________________
consensus             AATCTCAGGTTGCTATGAATTTGTTTTCTTGGCCTTTATGTTTTTGCAGCTATAGATTTA
 
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rJMFF027K23+          TGTATTATCAAACTTGTGATTTAGT                                   
rJMFF002D06+          TGTATTATCAAACTTGTGATTTAGTTGTTTTGTCTTTGT                     
rJMFF027M07+          TGTATTATCAAACTTGTGATTTAGTTGTTTTGTCTTTGTTGTGTAATACATTTTTCATTT
                      ____________________________________________________________
consensus             TGTATTATCAAACTTGTGATTTAGTTGTTTTGTCTTTGTTGTGTAATACATTTTTCATTT
 
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rJMFF027M07+          TGTTTCTGCACCTTTTGTATTTTGATTACCACCTACCCCCGTTTATTCTGCCTGCCTGCC
                      ____________________________________________________________
consensus             TGTTTCTGCACCTTTTGTATTTTGATTACCACCTACCCCCGTTTATTCTGCCTGCCTGCC
 
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rJMFF027M07+          ATTGTCACATCTCTTATTAGAGAACTGAAATGTTCATAAAGAAATAGATGTTTGGGGAAG
                      ____________________________________________________________
consensus             ATTGTCACATCTCTTATTAGAGAACTGAAATGTTCATAAAGAAATAGATGTTTGGGGAAG