Contig 005429:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF018F16Sequence540010340 (5)emb|CDP06673.1|8e-84unnamed protein product [Coffea canephora]776005429 (4)ref|WP_037052485.1|1e-08hypothetical protein [Pseudomonas oleovorans]
JMFF026D08Sequence539010340 (5)ref|XP_009593629.1|1e-80PREDICTED: serine/arginine-rich splicing factor RS2Z33 isoform X1 [Nicotiana to788005429 (4)emb|CDM39172.1|1e-04hypothetical protein BN5_0560 [Pseudomonas pseudoalcaligenes CECT 5344] emb|CDR
JMFF028D16Sequence483010340 (5)emb|CDP06673.1|5e-67unnamed protein product [Coffea canephora]690005429 (4)ref|WP_037052485.1|1e-08hypothetical protein [Pseudomonas oleovorans]
JMFF050O07Sequence626010340 (5)ref|XP_009765001.1|2e-79PREDICTED: serine/arginine-rich splicing factor RS2Z33-like isoform X1 [Nicotia581005429 (4)ref|WP_017519164.1|2e-05hypothetical protein [Pseudomonas nitroreducens]

Alignment

This contig is upended


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rJMFF018F16+                                                                CTATAG
                      ____________________________________________________________
consensus                                                                   CTATAG
 
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rJMFF018F16+          CCGGTCAAGATCGCNTGCAACGGCTGCAAGGAGAGAACAAGTTGAGCACGAGAGAAGATC
                      ____________________________________________________________
consensus             CCGGTCAAGATCGCNTGCAACGGCTGCAAGGAGAGAACAAGTTGAGCACGAGAGAAGATC
 
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rJMFF018F16+          CAGGAGCCCTGCAATCAGCAGAAGCCCCGAGCGAAGAAGTGCTACTCCCTNTAAAACACA
                      ____________________________________________________________
consensus             CAGGAGCCCTGCAATCAGCAGAAGCCCCGAGCGAAGAAGTGCTACTCCCTNTAAAACACA
 
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rJMFF018F16+          GAAGCGCAGCCCAAACCCCATTGAGGCCAGCCCCCCAAGCCGGAGGGAAGAGAGTCCTTC
rJMFF028D16+                                GAGGCCAGCCCCCCAAGCCGGAGGGAAGAGAGTCNTTN
                      ____________________________________________________________
consensus             GAAGCGCAGCCCAAACCCCATTGAGGCCAGCCCCCCAAGCCGGAGGGAAGAGAGTCCTTC
 
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rJMFF018F16+          TAAGAGGGGAAAGGTGATGACAGACCAAGATGGCTATGACAGAAGCCCTCCTTCTAAGAG
rJMFF028D16+          TAAGAGGGGAAAGGTGATGACAGACCAAGATGGCTATGACAGAAGCCCTCCTTTTAAGAG
rJMFF026D08+          TAAGAGGGGAAAGNTGATGACAGACCAAGATGGCTATGACAGAAGCCNTCCTTNTAAGAG
                      ____________________________________________________________
consensus             TAAGAGGGGAAAGGTGATGACAGACCAAGATGGCTATGACAGAAGCCCTCCTTTTAAGAG
 
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rJMFF018F16+          GGCAAAGGCAATGACAGAACAAGATGGCTATGACAGAAGTCCTCCTTCTAAGAGGGCAAA
rJMFF028D16+          GGCAAAGGCAATGACAGAACAAGATGGCTATGACAGAAGTCCTCCTTCTAAGAGGGCAAA
rJMFF050O07+                                                               GGGCAAA
rJMFF026D08+          GGCAAAGGCAATGACAGAACAAGATGNCTATGACAGAAGTCCTCCTTCTAAGAGGGCAAA
                      ____________________________________________________________
consensus             GGCAAAGGCAATGACAGAACAAGATGGCTATGACAGAAGTCCTCCTTCTAAGAGGGCAAA
 
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rJMFF018F16+          GGCAATGACAGAACAAGATGACTATGACAGAAGCCCTCCTTCTAAGAGGGAAAAGGTGAT
rJMFF028D16+          GGCAATGACAGAACAAGATGACTATGACAGAAGCCCTCCTTCTAAGAGGGAAAAGGTGAT
rJMFF050O07+          GGCAATGACAGAACAAGATGACTATGACAGAAGCCCTCCTTCTAAGAGGGAAAAGGTGAT
rJMFF026D08+          GGCAATGACAGAACAAGATGACTATGACAGAAGCCCTCCTTCTAAGAGGGAAAAGGTGAT
                      ____________________________________________________________
consensus             GGCAATGACAGAACAAGATGACTATGACAGAAGCCCTCCTTCTAAGAGGGAAAAGGTGAT
 
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rJMFF018F16+          GACAGAAGAAGATGGCTATGGCAGAAGCCCTAAGGGGAAAAGAAGCCATAGTCCTTCTAA
rJMFF028D16+          GACAGAAGAAGATGGCTATGGCAGAAGCCCTAAGGGGAAAAGAAGCCATAGTCCTTCTAA
rJMFF050O07+          GACAGAAGAAGATGGCTATGGCAGAAGCCCTAAGGGGAAAAGAAGCCATAGTCCTTCTAA
rJMFF026D08+          GACAGAAGAAGATGGCTATGGCAGAAGCCCTAAGGGGAAAAGAAGCCATAGTCCTTCTAA
                      ____________________________________________________________
consensus             GACAGAAGAAGATGGCTATGGCAGAAGCCCTAAGGGGAAAAGAAGCCATAGTCCTTCTAA
 
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rJMFF018F16+          GAGGGAAAAGGTGATGACAGAAGAAGATGGCTATGACAGAAGCCCTAAGGGGAAACGAAG
rJMFF028D16+          GAGGGAAAAGGTGATGACAGAAGAAGATGGCTATGACAGAAGCCCTAAGGGGAAACGAAG
rJMFF050O07+          GAGGGAAAAGGTGATGACAGAAGAAGATGGCTATGACAGAAGCCCTAAGGGGAAACGAAG
rJMFF026D08+          GAGGGAAAAGGTGATGACAGAAGAAGATGGCTATGACAGAAGCCCTAAGGGGAAACGAAG
                      ____________________________________________________________
consensus             GAGGGAAAAGGTGATGACAGAAGAAGATGGCTATGACAGAAGCCCTAAGGGGAAACGAAG
 
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rJMFF018F16+          CCATATTCCTTCTAAGAGGGAAAAGGTGATGACAGAAGAAGATGGCTATGACAGAAGCCC
rJMFF028D16+          CCATATTCCTTCTAAGAGGGAAAAGGTGATGACAGAAGAAGATGGCTATGACAGAAGCCC
rJMFF050O07+          CCATATTCCTTCTAAGAGGGAAAAGGTGATGACAGAAGAAGATGGCTATGACAGAAGCCC
rJMFF026D08+          CCATATTCCTTCTAAGAGGGAAAAGGTGATGACAGAAGAAGATGGCTATGACAGAAGCCN
                      ____________________________________________________________
consensus             CCATATTCCTTCTAAGAGGGAAAAGGTGATGACAGAAGAAGATGGCTATGACAGAAGCCC
 
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rJMFF018F16+          TAAGGGGAAAAGAAGCCATAGTCCTTCGAGCCCTGAAAGAGGGAGCATAGCTCCTAGGAA
rJMFF028D16+          TAAGGGGAAAAGAAGCCATAGTCCTTCGAGCCCTGAAAGAGGGAGCATAGCTCCTAGGAA
rJMFF050O07+          TAAGGGGAAAAGAAGCCATAGTCCTTCGAGCCCTGAAAGAGGGAGCATAGCTCCTAGGAA
rJMFF026D08+          TAAGGGGAAAAGAAGCCATAGTCCTTCGAGCCCTGAAAGAGGGAGCATAGCTCCTAGGAA
                      ____________________________________________________________
consensus             TAAGGGGAAAAGAAGCCATAGTCCTTCGAGCCCTGAAAGAGGGAGCATAGCTCCTAGGAA
 
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rJMFF018F16+          GTATGATGAGAGCCCTTTCGAAGCTAATGGTCGCAGTGGCAGCAGCCCAAGTCCAAGGTA
rJMFF028D16+          GTATGATGAGAGCCCTTTCGAAGCTAATGGTCGCAGTGGCAGCAGCCCAAGTCCAAGGTA
rJMFF050O07+          GTATGATGAGAGCCCTTTCGAAGCTAATGGTCGCAGTGGCAGCAGCCCAAGTCCAAGGTA
rJMFF026D08+          GTATGATGAGAGCCCTTTCGAAGCTAATGGTCGCAGTGGCAGCAGCCCAAGTCCAAGGTA
                      ____________________________________________________________
consensus             GTATGATGAGAGCCCTTTCGAAGCTAATGGTCGCAGTGGCAGCAGCCCAAGTCCAAGGTA
 
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rJMFF018F16+          TGAAAGGAGCCCTGCTGATGACCGGGATGATAATTAGCTATCGCAATAGGCAGCCTGTTC
rJMFF028D16+          TGAAAGGAGCCCTGCTGATGACCGGGATGATAATTAGCTATCGCAATAGGCAGCCTGTTC
rJMFF050O07+          TGAAAGGAGCCCTGCTGATGACCGGGATGATAATTAGCTATCGCAATAGGCAGCCTGTTC
rJMFF026D08+          TGAAAGGAGCCCTGCTGATGACCGGGATGATAATTAGCTATCGCAATAGGCAGCCTGTTC
                      ____________________________________________________________
consensus             TGAAAGGAGCCCTGCTGATGACCGGGATGATAATTAGCTATCGCAATAGGCAGCCTGTTC
 
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rJMFF018F16+          CCATTGTTTGAAGTCAGAATGATCAATATCTTTATGGGAGAGAAACTTTT          
rJMFF028D16+          CCATTGTTTGAAGTCAGAATGATCAATATCTTTATGGGAGAGAAACTTTTGTCCTTAACA
rJMFF050O07+          CCATTGTTTGAAGTCAGAATGATCAATATCTTTATGGGAGAGAAACTTTTGTCCTTAACA
rJMFF026D08+          CCATTGTTTGAAGTCAGAATGATCAATATCTTTATGGGAGAGAAACTTTTGTCCTTAACA
                      ____________________________________________________________
consensus             CCATTGTTTGAAGTCAGAATGATCAATATCTTTATGGGAGAGAAACTTTTGTCCTTAACA
 
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rJMFF028D16+          ATGCATTTATTTCTTTTACAATTTCTCTGGTCTTTAGACCTTGTGAACACTA        
rJMFF050O07+          ATGCATTTATTTCTTTTACAATTTCTCTGGTCTTTAGACCTTGTGAACACTATGTTATGA
rJMFF026D08+          ATGCATTTATTTCTTTTACAATTTCTCTGGTCTTTAGACCTTGTGAACACTATGTTATGA
                      ____________________________________________________________
consensus             ATGCATTTATTTCTTTTACAATTTCTCTGGTCTTTAGACCTTGTGAACACTATGTTATGA
 
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rJMFF050O07+          AATGTACTGCAGGCAGTTAAGACTTCATTGACCC                          
rJMFF026D08+          AATGTACTGCAGGCAGTTAAGACTTCATTGACCCATACAATGCTCTATTTTACTCATCTG
                      ____________________________________________________________
consensus             AATGTACTGCAGGCAGTTAAGACTTCATTGACCCATACAATGCTCTATTTTACTCATCTG
 
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rJMFF026D08+          TTTAAATNGAAAGATGGGTAAGACCATTTGTATTGGCGTATTGGATAGTCTAGACAAAGG
                      ____________________________________________________________
consensus             TTTAAATNGAAAGATGGGTAAGACCATTTGTATTGGCGTATTGGATAGTCTAGACAAAGG