Contig 005395:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005E13Sequence487001995 (3)ref|XP_009592826.1|1e-33PREDICTED: zinc finger CCCH domain-containing protein 22-like isoform X3 [Nicot500005395 (2)ref|XP_006365191.1|6e-13PREDICTED: zinc finger CCCH domain-containing protein 53-like isoform X1 [Solan
JMFF017P13Sequence580001995 (3)ref|XP_009592826.1|2e-33PREDICTED: zinc finger CCCH domain-containing protein 22-like isoform X3 [Nicot744005395 (2)ref|XP_010313262.1|3e-33PREDICTED: zinc finger CCCH domain-containing protein 22 isoform X4 [Solanum ly

Alignment

This contig is upended


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rJMFF017P13+                                              CCTACAAGGAAAAGGGGAATATCC
                      ____________________________________________________________
consensus                                                 CCTACAAGGAAAAGGGGAATATCC
 
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rJMFF017P13+          CGGACAAAAANCAACAGCATCATATGGANGGAGCAAAGTTCGGGACATGCTTGAGCCCGT
                      ____________________________________________________________
consensus             CGGACAAAAANCAACAGCATCATATGGANGGAGCAAAGTTCGGGACATGCTTGAGCCCGT
 
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rJMFF017P13+          CCGGTCTTGATTCGTTGGAGCCCCATGACCTTCCTTTCGGACCGAGAATGTTTTATAATT
                      ____________________________________________________________
consensus             CCGGTCTTGATTCGTTGGAGCCCCATGACCTTCCTTTCGGACCGAGAATGTTTTATAATT
 
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rJMFF017P13+          CACGGGAGGCGATACTCAGAAGAAAATTGGAGCAGGAGGCTGAGTTGCAGCAGGCCGTCG
                      ____________________________________________________________
consensus             CACGGGAGGCGATACTCAGAAGAAAATTGGAGCAGGAGGCTGAGTTGCAGCAGGCCGTCG
 
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rJMFF005E13+                                                GACCAGAAGAATCATCCGAATT
rJMFF017P13+          AGCTTCAAGAACGAAGGCTGATGAATATGCAACTTGTGGACCAGAAGAATCATCCGAATT
                      ____________________________________________________________
consensus             AGCTTCAAGAACGAAGGCTGATGAATATGCAACTTGTGGACCAGAAGAATCATCCGAATT
 
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rJMFF005E13+          ATCATCNNTTCCAGCCCGGCGGCTCATATCCCGGTATCCCGGTTCCTTCCATGAGCAACC
rJMFF017P13+          ATCATCACTTCCAGCCCGGCGGCTCATATCCCGGTATCCCGGTTCCTTCCATGAGCAACC
                      ____________________________________________________________
consensus             ATCATCACTTCCAGCCCGGCGGCTCATATCCCGGTATCCCGGTTCCTTCCATGAGCAACC
 
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rJMFF005E13+          CGCTATCGCAAAACAATCAGGTTGTCCTCCTAGACAATGTGAAGCTTCCGCCCTGGGAAG
rJMFF017P13+          CGCTATCGCAAAACAATCAGGTTGTCCTCCTAGACAATGTGAAGCTTCCGCCCTGGGAAG
                      ____________________________________________________________
consensus             CGCTATCGCAAAACAATCAGGTTGTCCTCCTAGACAATGTGAAGCTTCCGCCCTGGGAAG
 
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rJMFF005E13+          CGGGTGAAGTCCAAGAGAATGACGGTGGAAACGAAACTAGCAAGGAACCGAGCGCTAATC
rJMFF017P13+          CGGGTGAAGTCCAAGAGAATGACGGTGGGACCGAAACTAGCAAGGAACCGAGCGCTAATC
                      ____________________________________________________________
consensus             CGGGTGAAGTCCAAGAGAATGACGGTGGGACCGAAACTAGCAAGGAACCGAGCGCTAATC
 
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rJMFF005E13+          ATGATGACCCGGAGCTAAACAAGAGCATGGAAAACATCCTTCCCGACAACCTTTTCGCTT
rJMFF017P13+          ATGATGACCCGGAGCTAAACAAGAGCATGGAAAACATCCTTCCCGACAACCTTTTCGCTT
                      ____________________________________________________________
consensus             ATGATGACCCGGAGCTAAACAAGAGCATGGAAAACATCCTTCCCGACAACCTTTTCGCTT
 
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rJMFF005E13+          TCCCTACAAAATCCCCCGCTCCCGCAAATGCTGATGATGATAGCCCCTCGGATACACCTT
rJMFF017P13+          TCCCTACAAAATCCCCCGCTCCCGCAAATGCTGATGATGATAGCCCCTCGGATACACCTT
                      ____________________________________________________________
consensus             TCCCTACAAAATCCCCCGCTCCCGCAAATGCTGATGATGATAGCCCCTCGGATACACCTT
 
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rJMFF005E13+          CTAATGACATCCCCGCGCTCTCTGCTACCTCCACCCTCAACATGGCGTCTCTTCAATCAT
rJMFF017P13+          CTAATGACATCCCCGCGCTCTCTGCTACCTCCACCCTCAACATGGCGTCTCTTCAATCAT
                      ____________________________________________________________
consensus             CTAATGACATCCCCGCGCTCTCTGCTACCTCCACCCTCAACATGGCGTCTCTTCAATCAT
 
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rJMFF005E13+          GCGCCCTGAAGATGCCAAAGTTGACTTCCGGCCAAGAAGCCATCGAAGTGTAGGAAGAAG
rJMFF017P13+          GCGCCCTGAAGATGCCAAAGTTGACTTCCGGCCAAGAAGCCATCGAAGTGTAGGAAGAAG
                      ____________________________________________________________
consensus             GCGCCCTGAAGATGCCAAAGTTGACTTCCGGCCAAGAAGCCATCGAAGTGTAGGAAGAAG
 
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rJMFF005E13+          TTCGATCTGGTCGATGGTTTATGGTTTAAAGTAAATCGCTCTCCCCCCCACTCTACCA  
rJMFF017P13+          TTCGATCTGGTCGATGGTTTATGGTTTAAAGTAAATCGCTCTCCCCCCCACTCTACCATT
                      ____________________________________________________________
consensus             TTCGATCTGGTCGATGGTTTATGGTTTAAAGTAAATCGCTCTCCCCCCCACTCTACCATT