Contig 005377:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014H20Sequence550005959 (2)ref|XP_006349816.1|8e-26PREDICTED: ubiquitin-like-specific protease ESD4-like [Solanum tuberosum]762005377 (2)ref|XP_009612677.1|5e-73PREDICTED: ubiquitin-like-specific protease ESD4 isoform X2 [Nicotiana tomentos
JMFF020F18Sequence525005959 (2)ref|XP_006342802.1|4e-19PREDICTED: ubiquitin-like-specific protease ESD4-like isoform X2 [Solanum tuber716005377 (2)ref|XP_009612677.1|2e-63PREDICTED: ubiquitin-like-specific protease ESD4 isoform X2 [Nicotiana tomentos

Alignment

This contig is upended


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rJMFF020F18+                                                   ATGTGACAAAATTTTNGTC
rJMFF014H20+                            AAATTAGGATACTGCCTATTTGAATGTGACAAAATTTTNGTC
                      ____________________________________________________________
consensus                               AAATTAGGATACTGCCTATTTGAATGTGACAAAATTTTNGTC
 
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rJMFF020F18+          CCCATTCACAAAGAAATACATTGGTGTTTAGCTGTCATCAACAAGAAGGATGAAAAGTTC
rJMFF014H20+          CCCATTCACAAAGAAATACATTGGTGTTTAGCTGTCATCAACAAGAAGGATGAAAAGTTC
                      ____________________________________________________________
consensus             CCCATTCACAAAGAAATACATTGGTGTTTAGCTGTCATCAACAAGAAGGATGAAAAGTTC
 
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rJMFF020F18+          CAGTATCTTGATTCTCTAAGGGGAAGAGATTCTAAAGTTCTGAAAGCATTGGCTAGGTAC
rJMFF014H20+          CAGTATCTTGATTCTCTAAGGGGAAGAGATTCTAAAGTTCTGAAAGCATTGGCTAGGTAC
                      ____________________________________________________________
consensus             CAGTATCTTGATTCTCTAAGGGGAAGAGATTCTAAAGTTCTGAAAGCATTGGCTAGGTAC
 
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rJMFF020F18+          TATGCTGATGAAGTGAAGGACAAGAGTGGTGAAGCCATTGATGTTAGTTCATGGGAACAA
rJMFF014H20+          TATGCTGATGAAGTGAAGGACAAGAGTGGTGAAGCCATTGATGTTAGTTCATGGGAACAA
                      ____________________________________________________________
consensus             TATGCTGATGAAGTGAAGGACAAGAGTGGTGAAGCCATTGATGTTAGTTCATGGGAACAA
 
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rJMFF020F18+          GAATTTGTTGAAGACCTTCCTGAGCAAGAAAATGGGTTTGACTGTGGAATGTTCATGATT
rJMFF014H20+          GAATTTGTTGAAGACCTTCCTGAGCAAGAAAATGGGTTTGACTGTGGAATGTTCATGATT
                      ____________________________________________________________
consensus             GAATTTGTTGAAGACCTTCCTGAGCAAGAAAATGGGTTTGACTGTGGAATGTTCATGATT
 
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rJMFF020F18+          AAGTATGCTGATTTCTACAGCAGAAATATAGGGCTCTGTTTTAACCAGGAACACATGCAG
rJMFF014H20+          AAGTATGCTGATTTCTACAGCAGAAATATAGGGCTCTGTTTTAACCAGGAACACATGCAG
                      ____________________________________________________________
consensus             AAGTATGCTGATTTCTACAGCAGAAATATAGGGCTCTGTTTTAACCAGGAACACATGCAG
 
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rJMFF020F18+          TATTTTCGGTTGAGGACTGCAAAGGAGA-TTTGAGGTTGAAAGCAGACTGATCAAGCTTG
rJMFF014H20+          TATTTTCGGTTGAGGACTGCAAAGGAGATTTTGAGGTTGAAAGCAGACTGATCAAGCTTG
                      ____________________________________________________________
consensus             TATTTTCGGTTGAGGACTGCAAAGGAGATTTTGAGGTTGAAAGCAGACTGATCAAGCTTG
 
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rJMFF020F18+          AACACGCTCTCCCGCGTTCTAATTACCGATAATGAATCTTACAAAACAATCAACAGATAA
rJMFF014H20+          AACACGCTCTCCCGCGTTCTAATTACCGATAATGAATCTTACAAAACAATCAACAGATAA
                      ____________________________________________________________
consensus             AACACGCTCTCCCGCGTTCTAATTACCGATAATGAATCTTACAAAACAATCAACAGATAA
 
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rJMFF020F18+          TTGATTAGTGTGCAGATATGATATGATGTTTCTTCTCTCCATTCAAAATTACGCACTATA
rJMFF014H20+          TTGATTAGTGTGCAGATATGATATGATGTTTCTTCTCTCCATTCAAAATTACGCACTATA
                      ____________________________________________________________
consensus             TTGATTAGTGTGCAGATATGATATGATGTTTCTTCTCTCCATTCAAAATTACGCACTATA
 
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rJMFF020F18+          GCTCTAGCCAGTGGATGCCAGTTTTGCAGTTACTTTCGATTGAGTGAGGTGTATTGTTTT
rJMFF014H20+          GCTCTAGCCAGTGGATGCCAGTTTTGCAGTTACTTTCGATTGAGTGAGGTGTATTGTTTT
                      ____________________________________________________________
consensus             GCTCTAGCCAGTGGATGCCAGTTTTGCAGTTACTTTCGATTGAGTGAGGTGTATTGTTTT
 
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rJMFF020F18+          GTTTGTAAAAACCTGGTAAGCCATGGTTTGTCCTTGTACATGAATTTCTAGGGATCCTAT
rJMFF014H20+          GTTTGTAAAAACCTGGTAAGCCATGGTTTGTCCTTGTACATGAATTTCTAGGGATCCTAT
                      ____________________________________________________________
consensus             GTTTGTAAAAACCTGGTAAGCCATGGTTTGTCCTTGTACATGAATTTCTAGGGATCCTAT
 
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rJMFF020F18+          CCAAGTGTTGATGGTTAGCTTTTTCTTCCTACAGAATTTTGACCTCTATTTAGGCACAAG
rJMFF014H20+          CCAAGTGTTGATGGTTAGCTTTTTCTTCCTACAGAATTTTGACCTCTATTTAGGCACAAG
                      ____________________________________________________________
consensus             CCAAGTGTTGATGGTTAGCTTTTTCTTCCTACAGAATTTTGACCTCTATTTAGGCACAAG
 
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rJMFF020F18+          TCTATATGCCTTGTGAAGATTAAATCTGATTGCTGCTT                      
rJMFF014H20+          TCTATATGCCTTGTGAAGATTAAATCTGATTGCTGCTTTGTCCTTAGTTTTCTGAGTAAA
                      ____________________________________________________________
consensus             TCTATATGCCTTGTGAAGATTAAATCTGATTGCTGCTTTGTCCTTAGTTTTCTGAGTAAA