clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF002K17 | Sequence | 323 | 000008 (10) | 187 | 005372 (9) | ||||||
JMFF013B11 | Sequence | 294 | 000008 (10) | ref|XP_006345386.1| | 8e-08 | PREDICTED: zinc finger CCCH domain-containing protein 53-like isoform X3 [Solan | 288 | 005372 (9) | |||
JMFF017N12 | Sequence | 583 | 000008 (10) | ref|XP_006345386.1| | 1e-37 | PREDICTED: zinc finger CCCH domain-containing protein 53-like isoform X3 [Solan | 747 | 005372 (9) | ref|XP_006345385.1| | 1e-22 | PREDICTED: zinc finger CCCH domain-containing protein 53-like isoform X2 [Solan |
JMFF035N20 | Sequence | 440 | 000008 (10) | ref|XP_010067777.1| | 6e-10 | PREDICTED: zinc finger CCCH domain-containing protein 53 [Eucalyptus grandis] r | 277 | 005372 (9) | |||
JMSF008P21 | Sequence | 218 | 010950 (10) | 368 | 005372 (9) | ref|XP_006345385.1| | 2e-14 | PREDICTED: zinc finger CCCH domain-containing protein 53-like isoform X2 [Solan | |||
JMSF012F20 | Sequence | 190 | 010950 (10) | 506 | 005372 (9) | ref|XP_006345385.1| | 6e-23 | PREDICTED: zinc finger CCCH domain-containing protein 53-like isoform X2 [Solan | |||
JMSF021P09 | Sequence | 103 | 005372 (9) | ||||||||
JMSF029M13 | Sequence | 662 | 000008 (10) | ref|XP_006345386.1| | 6e-52 | PREDICTED: zinc finger CCCH domain-containing protein 53-like isoform X3 [Solan | 699 | 005372 (9) | ref|XP_006345385.1| | 3e-22 | PREDICTED: zinc finger CCCH domain-containing protein 53-like isoform X2 [Solan |
JMSF052P21 | Sequence | 459 | 010950 (10) | 890 | 005372 (9) | ref|XP_009793355.1| | 4e-52 | PREDICTED: zinc finger CCCH domain-containing protein 53-like isoform X2 [Nicot |
This contig is upended
. : . : . : . : . : . :
rJMSF052P21+ GAGGAGCAGGCGGATTTGCAGCAAGCCATCGAGCTTCAGAGCCGGAGGCTGATG
____________________________________________________________
consensus GAGGAGCAGGCGGATTTGCAGCAAGCCATCGAGCTTCAGAGCCGGAGGCTGATG
. : . : . : . : . : . :
rJMSF052P21+ AATCTACAGNTTCTCGATGTGAAGAGGAGCAATCATCATCGTGCCTTTTCCACGGGAGCC
____________________________________________________________
consensus AATCTACAGNTTCTCGATGTGAAGAGGAGCAATCATCATCGTGCCTTTTCCACGGGAGCC
. : . : . : . : . : . :
rJMFF017N12+ TTTCCCG
rJMSF029M13+ TTTCCCG
rJMSF012F20+ TTTCCCG
rJMSF008P21+ TCCCG
rJMSF052P21+ GTTATCTCGTCCCCGGTTCACTCCCCGGGATTCATTGGCCACAACAATGTTGTTTTCCCG
____________________________________________________________
consensus GTTATCTCGTCCCCGGTTCACTCCCCGGGATTCATTGGCCACAACAATGTTGTTTTCCCG
. : . : . : . : . : . :
rJMFF017N12+ ACTAGTCAAGATTGCAGCAAAGTTCCCGAGAACGGTTTTGCGCCTAAAATGGTAAACCAA
rJMSF029M13+ ACTAGTCAAGATTGCAGCAAAGTTCCCGAGAACGGTTTTGCGCCTAAAATGGTAAACCAA
rJMSF012F20+ ANTAGTCAAGATTGCAGCAAAGTTCCCGAGAACGGTTTTGCGCCTAAAATGGTAAACCAA
rJMFF002K17+ AA
rJMSF021P09+ AACCAA
rJMSF008P21+ ACTAGTCAAGATTGCAGCAAAGTTCCCGAGAACGGTTTTGCGCCTAAAATGGTAAACCAA
rJMSF052P21+ ACTAGTCAAGATTGCAGCAAAGTTCCCGAGAACGGTTTTGCGCCTAAAATGGTAAACCAA
____________________________________________________________
consensus ACTAGTCAAGATTGCAGCAAAGTTCCCGAGAACGGTTTTGCGCCTAAAATGGTAAACCAA
. : . : . : . : . : . :
rJMFF017N12+ GCAAGTATTGGGACCGAAAAGGAGGTGCAAGAAAGGGAGAAAGAACCATCCAAAGGGAAG
rJMSF029M13+ GCAAGTATTGGGACCGAAAAGGAGGTGCAAGAAAGGGAGAAAGAACCATCCAAAGGGAAG
rJMSF012F20+ GCAAGTATTGGGACCGAAAAGGAGGTGCAAGAAAGGGAGAAAGAACCATCCAAAGGGAAG
rJMFF002K17+ GCAAGTATTGGGCCCGAAAAGGAGGTGCAAGAAAGGGAGAAAGATCCATCCAAAGGGAAG
rJMSF021P09+ GCAGGTATNGNGACCGAAAAGGAGGTGCAAGAAAGGGAGAAAGAACCATCCAAAGGGAAG
rJMSF008P21+ GCAAGTATTGGGACCGAAAAGGAGGTGCAAGAAAGGGAGAAAGAACCATCCAAAGGGAAG
rJMSF052P21+ GCAAGTATTGGGACCGAAAAGGAGGTGCAAGAAAGGGAGAAAGAACCATCCAAAGGGAAG
____________________________________________________________
consensus GCAAGTATTGGGACCGAAAAGGAGGTGCAAGAAAGGGAGAAAGAACCATCCAAAGGGAAG
. : . : . : . : . : . :
rJMFF017N12+ GATGAGAATGGTAATGGCAAAGAAAACAAGGGAGAAAACGAGTTACCCGAAAGTGTGGAA
rJMSF029M13+ GATGAGAATGGTAATGGCAAAGAAAACAAGGGAGAAAACGAGTTACCCGAAAGTGTGGAA
rJMSF012F20+ GATGAGAATGGTAATGGCAAAGAAAACAAGGGAGAAAACGAGTTACCCGAAAGTGTGGAA
rJMFF002K17+ GATGAGAATGGTAATGGCAAAGAAAACAAGGGAGAAAACGAGTTACCCGAAAGTGTGGAA
rJMSF021P09+ GATGAGAATGGTAATGGCAAAGAAAACAAGGGAGAA
rJMSF008P21+ GATGAGAATGGTAATGGCAAAGAAAACAAGGGAGAAAACGAGTTACCCGAAAGTGTGGAA
rJMSF052P21+ GATGAGAATGGTAATGGCAAAGAAAACAAGGGAGAAAACGAGTTACCCGAAAGTGTGGAA
____________________________________________________________
consensus GATGAGAATGGTAATGGCAAAGAAAACAAGGGAGAAAACGAGTTACCCGAAAGTGTGGAA
. : . : . : . : . : . :
rJMFF017N12+ CACAATCTCCCCGATAGCCCGTTTGCATCGCCTAAAGCCGCTGGAGACTCGATGTCGTCT
rJMSF029M13+ CACAATCTCCCCGATAGCCCGTTTGCATCGCCTAAAGCCGCTGGAGACTCGATGTCGTCT
rJMSF012F20+ CACAATCTCCCCGATAGCCCGTTTGCATCGCCTAAAGCCGCTGGAGACTCGATGTCGTCT
rJMFF002K17+ CACAATCTCCCCGATAGCCCGTTTGCATCGCCTAAAGCCGCTGGAGACTCGATGTCGTCT
rJMSF008P21+ CACAATCTCCCCGATAGCCCGTTTGCATCGCCTAAAGCCGCTGGAGACTCGATGTCGTCT
rJMSF052P21+ CACAATCTCCCCGATAGCCCGTTTGCATCGCCTAAAGCCGCTGGAGACTCGATGTCGTCT
____________________________________________________________
consensus CACAATCTCCCCGATAGCCCGTTTGCATCGCCTAAAGCCGCTGGAGACTCGATGTCGTCT
. : . : . : . : . : . :
rJMFF017N12+ GCTTTCTTGAACGACGTTGGAGAAGGCGAGAANCCATCTTCGGGCACCAACAACCTCATC
rJMSF029M13+ GCTTTCTTGAACGACGTTGGAGAAGGCGAGAANCCATCTTCGGGCACCAACAACCTCATC
rJMSF012F20+ GCTTTCTTGAACGACGTTGGAGAAGGCGAGAAACCATCTTCGGGCACCAACAACCTCATC
rJMFF002K17+ GCTTT
rJMSF008P21+ GCTTTCTTGAACGACGTTGGAGAAGGCGAGAAACCATCTTCGGGCACCAACAACCTCATC
rJMSF052P21+ GCTTTCTTGAACGACGTTGGAGAAGGCGAGAAACCATCTTCGGGCACCAACAACCTCATC
____________________________________________________________
consensus GCTTTCTTGAACGACGTTGGAGAAGGCGAGAAACCATCTTCGGGCACCAACAACCTCATC
. : . : . : . : . : . :
rJMFF017N12+ GCCGCCTCGCCCTTGTTCCCCGCCAATGNTTCACTCGATATGACCCCATTGAAATCATGT
rJMSF029M13+ GCCGCCTCGCCCTTGTTCCCCGCCAATGCTTCACTCGATATGACCCCATTGAAATCATGT
rJMSF012F20+ GCCGCCTCGCCCTTGTTCCCCGCCAATGCTTCACTCGATATGACCCCATTGAAATCATGT
rJMSF008P21+ GCCGCCTCGCCCTTGTTCCCCGCCAATGCTTCACTCGATATGACCCCATTGAAATCANGT
rJMSF052P21+ GCCGCCTCGCCCTTGTTCCCCGCCAATGCTTCACTCGATATGACCCCATTGAAATCATGT
____________________________________________________________
consensus GCCGCCTCGCCCTTGTTCCCCGCCAATGCTTCACTCGATATGACCCCATTGAAATCATGT
. : . : . : . : . : . :
rJMFF017N12+ TACCTTGAAGTTGCTAGGTTCCCTTCGGGATCCGGTGCAATTGGAATGTAAGCNTAAACC
rJMSF029M13+ TACCTNGAAGTTGCTAGGTTCCCTTCGGGATCCGGTGCAATTGGAATGTAAGCNTAAACC
rJMSF012F20+ TACCTTGAAGTTGCTAGGTTCCCTTCGGGATCCGGTGCAATTGGAATGTAAGCCTAAACC
rJMSF008P21+ TAC
rJMFF035N20+ GGGATCCGGTGCANTTGGAATGNAANCNTANCCC
rJMSF052P21+ TACCTTGAAGTTGCTAGGTTCCCTTCGGGATCCGGTGCAATTGGAATGTAAGCCTAAACC
____________________________________________________________
consensus TACCTTGAAGTTGCTAGGTTCCCTTCGGGATCCGGTGCAATTGGAATGTAAGCCTAAACC
. : . : . : . : . : . :
rJMFF017N12+ AGCCCGTGACACAATTAGGCTTCCTTAGTTTAGGAAGTAAGAAGAGTATGTACAAGTATA
rJMSF029M13+ AGCCCGTGACACAATTAGGCTTCNTTAGTTTAGGAAGTAAGAAGAGTATGTACAAGTATA
rJMSF012F20+ AGCCCGTGACACAATTAGGCTTCCTTAGTTTAGGAAGTAAGAAGAGTATGTACAAGT
rJMFF035N20+ AGCCCGNGACACAANTAGGCTTCNNTAGTNTAGGAAGTAAGAAGAGTATGTACNAGTATN
rJMSF052P21+ AGCCCGTGACACAATTAGGCTTCCTTAGTTTAGGAAGTAAGAAGAGTATGTACAAGTATA
rJMFF013B11+ TAGTTTAGGAAGTAAGAAGAGTATGTACAAGTATA
____________________________________________________________
consensus AGCCCGTGACACAATTAGGCTTCCTTAGTTTAGGAAGTAAGAAGAGTATGTACAAGTATA
. : . : . : . : . : . :
rJMFF017N12+ ACCACCACCACCACCACAACCACTGCCACCGCCTTCGCCTTGTGANTAAGTAACATCATC
rJMSF029M13+ ACCACCACCACCACCACAACCACTGCCACCGCCTTCGCCTTGTGANTAAGTAACATCATC
rJMFF035N20+ TCCNCCACCACCACCGCAACCACTGCCACCGCCTTCGCCTTGNGANTAAGTNACATCATC
rJMSF052P21+ ACCACCACCACCACCACAACCACTGCCACCGCCTTCGCCTTGTGACTAAGTAACATCATC
rJMFF013B11+ NCCNCCACCACCACCACAACCACTGCCACCGCCTTCGCCTTGTGANTAAGTAACATCATC
____________________________________________________________
consensus ACCACCACCACCACCACAACCACTGCCACCGCCTTCGCCTTGTGACTAAGTAACATCATC
. : . : . : . : . : . :
rJMFF017N12+ AGACAACACATATATTACTATTTACTACCAATACAAATATGCATACATAGTAAAAAAAGA
rJMSF029M13+ AGACAACACATATATTACTATTTACTACCAATACAAATATGCATACATAGTAAAAAAAGA
rJMFF035N20+ AGACAACACATATATTACTATTTACTACCAATACAAATATGCATACATAGTAAAAAAAGA
rJMSF052P21+ AGACAACACATATATTACTATTTACTACCAATACAAATATGCATACATAGTAAAAAAAGA
rJMFF013B11+ AGACAACACATATATTACTATTTACTACCAATACAAATATGCATACATAGTAAAAAAAGA
____________________________________________________________
consensus AGACAACACATATATTACTATTTACTACCAATACAAATATGCATACATAGTAAAAAAAGA
. : . : . : . : . : . :
rJMFF017N12+ AGTGGGACAGCCATTTTCCATTTTCCCTTGTTTTCTTGTGTTGTATTCTCCAGTCTCTCT
rJMSF029M13+ AGTGGGACAGCCATTTTCCATTTTCCCTNGTTTTCTTGTGTTGTATTCTCCAGTCTCTCT
rJMFF035N20+ AGTGGGACAGCCATTTTCCATTTTCCCTNGTTTTNTTGNGTTGTATTCTC
rJMSF052P21+ AGTGGGACAGCCATTTTCCATTTTCCCTTGTTTTCTTGTGTTGTATTCTCCAGTCTCTCT
rJMFF013B11+ AGTGGGACAGCCATTTTCCATTTTCCCTTGTTTTCTTGTGTTGTATTCTCCAGTCTCTCT
____________________________________________________________
consensus AGTGGGACAGCCATTTTCCATTTTCCCTTGTTTTCTTGTGTTGTATTCTCCAGTCTCTCT
. : . : . : . : . : . :
rJMFF017N12+ CACATCTCTCTGTAGTAGAGGTTCTTGGT
rJMSF029M13+ CACATCTCTC
rJMSF052P21+ CACATCTCTCTGTAGTTGAGGTTCTTGGT
rJMFF013B11+ CACATCTCTCTGTAGTNGAGGTTCTTGGTTGGACCNCAGGTAGAGAAAGGAAAAAAGAAT
____________________________________________________________
consensus CACATCTCTCTGTAGTTGAGGTTCTTGGTTGGACCNCAGGTAGAGAAAGGAAAAAAGAAT