Contig 005372:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF002K17Sequence323000008 (10)187005372 (9)
JMFF013B11Sequence294000008 (10)ref|XP_006345386.1|8e-08PREDICTED: zinc finger CCCH domain-containing protein 53-like isoform X3 [Solan288005372 (9)
JMFF017N12Sequence583000008 (10)ref|XP_006345386.1|1e-37PREDICTED: zinc finger CCCH domain-containing protein 53-like isoform X3 [Solan747005372 (9)ref|XP_006345385.1|1e-22PREDICTED: zinc finger CCCH domain-containing protein 53-like isoform X2 [Solan
JMFF035N20Sequence440000008 (10)ref|XP_010067777.1|6e-10PREDICTED: zinc finger CCCH domain-containing protein 53 [Eucalyptus grandis] r277005372 (9)
JMSF008P21Sequence218010950 (10)368005372 (9)ref|XP_006345385.1|2e-14PREDICTED: zinc finger CCCH domain-containing protein 53-like isoform X2 [Solan
JMSF012F20Sequence190010950 (10)506005372 (9)ref|XP_006345385.1|6e-23PREDICTED: zinc finger CCCH domain-containing protein 53-like isoform X2 [Solan
JMSF021P09Sequence103005372 (9)
JMSF029M13Sequence662000008 (10)ref|XP_006345386.1|6e-52PREDICTED: zinc finger CCCH domain-containing protein 53-like isoform X3 [Solan699005372 (9)ref|XP_006345385.1|3e-22PREDICTED: zinc finger CCCH domain-containing protein 53-like isoform X2 [Solan
JMSF052P21Sequence459010950 (10)890005372 (9)ref|XP_009793355.1|4e-52PREDICTED: zinc finger CCCH domain-containing protein 53-like isoform X2 [Nicot

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF052P21+ GAGGAGCAGGCGGATTTGCAGCAAGCCATCGAGCTTCAGAGCCGGAGGCTGATG
                      ____________________________________________________________
consensus GAGGAGCAGGCGGATTTGCAGCAAGCCATCGAGCTTCAGAGCCGGAGGCTGATG
 
. : . : . : . : . : . :
rJMSF052P21+ AATCTACAGNTTCTCGATGTGAAGAGGAGCAATCATCATCGTGCCTTTTCCACGGGAGCC
                      ____________________________________________________________
consensus AATCTACAGNTTCTCGATGTGAAGAGGAGCAATCATCATCGTGCCTTTTCCACGGGAGCC
 
. : . : . : . : . : . :
rJMFF017N12+ TTTCCCG
rJMSF029M13+ TTTCCCG
rJMSF012F20+ TTTCCCG
rJMSF008P21+ TCCCG
rJMSF052P21+ GTTATCTCGTCCCCGGTTCACTCCCCGGGATTCATTGGCCACAACAATGTTGTTTTCCCG
                      ____________________________________________________________
consensus GTTATCTCGTCCCCGGTTCACTCCCCGGGATTCATTGGCCACAACAATGTTGTTTTCCCG
 
. : . : . : . : . : . :
rJMFF017N12+ ACTAGTCAAGATTGCAGCAAAGTTCCCGAGAACGGTTTTGCGCCTAAAATGGTAAACCAA
rJMSF029M13+ ACTAGTCAAGATTGCAGCAAAGTTCCCGAGAACGGTTTTGCGCCTAAAATGGTAAACCAA
rJMSF012F20+ ANTAGTCAAGATTGCAGCAAAGTTCCCGAGAACGGTTTTGCGCCTAAAATGGTAAACCAA
rJMFF002K17+ AA
rJMSF021P09+ AACCAA
rJMSF008P21+ ACTAGTCAAGATTGCAGCAAAGTTCCCGAGAACGGTTTTGCGCCTAAAATGGTAAACCAA
rJMSF052P21+ ACTAGTCAAGATTGCAGCAAAGTTCCCGAGAACGGTTTTGCGCCTAAAATGGTAAACCAA
                      ____________________________________________________________
consensus ACTAGTCAAGATTGCAGCAAAGTTCCCGAGAACGGTTTTGCGCCTAAAATGGTAAACCAA
 
. : . : . : . : . : . :
rJMFF017N12+ GCAAGTATTGGGACCGAAAAGGAGGTGCAAGAAAGGGAGAAAGAACCATCCAAAGGGAAG
rJMSF029M13+ GCAAGTATTGGGACCGAAAAGGAGGTGCAAGAAAGGGAGAAAGAACCATCCAAAGGGAAG
rJMSF012F20+ GCAAGTATTGGGACCGAAAAGGAGGTGCAAGAAAGGGAGAAAGAACCATCCAAAGGGAAG
rJMFF002K17+ GCAAGTATTGGGCCCGAAAAGGAGGTGCAAGAAAGGGAGAAAGATCCATCCAAAGGGAAG
rJMSF021P09+ GCAGGTATNGNGACCGAAAAGGAGGTGCAAGAAAGGGAGAAAGAACCATCCAAAGGGAAG
rJMSF008P21+ GCAAGTATTGGGACCGAAAAGGAGGTGCAAGAAAGGGAGAAAGAACCATCCAAAGGGAAG
rJMSF052P21+ GCAAGTATTGGGACCGAAAAGGAGGTGCAAGAAAGGGAGAAAGAACCATCCAAAGGGAAG
                      ____________________________________________________________
consensus GCAAGTATTGGGACCGAAAAGGAGGTGCAAGAAAGGGAGAAAGAACCATCCAAAGGGAAG
 
. : . : . : . : . : . :
rJMFF017N12+ GATGAGAATGGTAATGGCAAAGAAAACAAGGGAGAAAACGAGTTACCCGAAAGTGTGGAA
rJMSF029M13+ GATGAGAATGGTAATGGCAAAGAAAACAAGGGAGAAAACGAGTTACCCGAAAGTGTGGAA
rJMSF012F20+ GATGAGAATGGTAATGGCAAAGAAAACAAGGGAGAAAACGAGTTACCCGAAAGTGTGGAA
rJMFF002K17+ GATGAGAATGGTAATGGCAAAGAAAACAAGGGAGAAAACGAGTTACCCGAAAGTGTGGAA
rJMSF021P09+ GATGAGAATGGTAATGGCAAAGAAAACAAGGGAGAA
rJMSF008P21+ GATGAGAATGGTAATGGCAAAGAAAACAAGGGAGAAAACGAGTTACCCGAAAGTGTGGAA
rJMSF052P21+ GATGAGAATGGTAATGGCAAAGAAAACAAGGGAGAAAACGAGTTACCCGAAAGTGTGGAA
                      ____________________________________________________________
consensus GATGAGAATGGTAATGGCAAAGAAAACAAGGGAGAAAACGAGTTACCCGAAAGTGTGGAA
 
. : . : . : . : . : . :
rJMFF017N12+ CACAATCTCCCCGATAGCCCGTTTGCATCGCCTAAAGCCGCTGGAGACTCGATGTCGTCT
rJMSF029M13+ CACAATCTCCCCGATAGCCCGTTTGCATCGCCTAAAGCCGCTGGAGACTCGATGTCGTCT
rJMSF012F20+ CACAATCTCCCCGATAGCCCGTTTGCATCGCCTAAAGCCGCTGGAGACTCGATGTCGTCT
rJMFF002K17+ CACAATCTCCCCGATAGCCCGTTTGCATCGCCTAAAGCCGCTGGAGACTCGATGTCGTCT
rJMSF008P21+ CACAATCTCCCCGATAGCCCGTTTGCATCGCCTAAAGCCGCTGGAGACTCGATGTCGTCT
rJMSF052P21+ CACAATCTCCCCGATAGCCCGTTTGCATCGCCTAAAGCCGCTGGAGACTCGATGTCGTCT
                      ____________________________________________________________
consensus CACAATCTCCCCGATAGCCCGTTTGCATCGCCTAAAGCCGCTGGAGACTCGATGTCGTCT
 
. : . : . : . : . : . :
rJMFF017N12+ GCTTTCTTGAACGACGTTGGAGAAGGCGAGAANCCATCTTCGGGCACCAACAACCTCATC
rJMSF029M13+ GCTTTCTTGAACGACGTTGGAGAAGGCGAGAANCCATCTTCGGGCACCAACAACCTCATC
rJMSF012F20+ GCTTTCTTGAACGACGTTGGAGAAGGCGAGAAACCATCTTCGGGCACCAACAACCTCATC
rJMFF002K17+ GCTTT
rJMSF008P21+ GCTTTCTTGAACGACGTTGGAGAAGGCGAGAAACCATCTTCGGGCACCAACAACCTCATC
rJMSF052P21+ GCTTTCTTGAACGACGTTGGAGAAGGCGAGAAACCATCTTCGGGCACCAACAACCTCATC
                      ____________________________________________________________
consensus GCTTTCTTGAACGACGTTGGAGAAGGCGAGAAACCATCTTCGGGCACCAACAACCTCATC
 
. : . : . : . : . : . :
rJMFF017N12+ GCCGCCTCGCCCTTGTTCCCCGCCAATGNTTCACTCGATATGACCCCATTGAAATCATGT
rJMSF029M13+ GCCGCCTCGCCCTTGTTCCCCGCCAATGCTTCACTCGATATGACCCCATTGAAATCATGT
rJMSF012F20+ GCCGCCTCGCCCTTGTTCCCCGCCAATGCTTCACTCGATATGACCCCATTGAAATCATGT
rJMSF008P21+ GCCGCCTCGCCCTTGTTCCCCGCCAATGCTTCACTCGATATGACCCCATTGAAATCANGT
rJMSF052P21+ GCCGCCTCGCCCTTGTTCCCCGCCAATGCTTCACTCGATATGACCCCATTGAAATCATGT
                      ____________________________________________________________
consensus GCCGCCTCGCCCTTGTTCCCCGCCAATGCTTCACTCGATATGACCCCATTGAAATCATGT
 
. : . : . : . : . : . :
rJMFF017N12+ TACCTTGAAGTTGCTAGGTTCCCTTCGGGATCCGGTGCAATTGGAATGTAAGCNTAAACC
rJMSF029M13+ TACCTNGAAGTTGCTAGGTTCCCTTCGGGATCCGGTGCAATTGGAATGTAAGCNTAAACC
rJMSF012F20+ TACCTTGAAGTTGCTAGGTTCCCTTCGGGATCCGGTGCAATTGGAATGTAAGCCTAAACC
rJMSF008P21+ TAC
rJMFF035N20+ GGGATCCGGTGCANTTGGAATGNAANCNTANCCC
rJMSF052P21+ TACCTTGAAGTTGCTAGGTTCCCTTCGGGATCCGGTGCAATTGGAATGTAAGCCTAAACC
                      ____________________________________________________________
consensus TACCTTGAAGTTGCTAGGTTCCCTTCGGGATCCGGTGCAATTGGAATGTAAGCCTAAACC
 
. : . : . : . : . : . :
rJMFF017N12+ AGCCCGTGACACAATTAGGCTTCCTTAGTTTAGGAAGTAAGAAGAGTATGTACAAGTATA
rJMSF029M13+ AGCCCGTGACACAATTAGGCTTCNTTAGTTTAGGAAGTAAGAAGAGTATGTACAAGTATA
rJMSF012F20+ AGCCCGTGACACAATTAGGCTTCCTTAGTTTAGGAAGTAAGAAGAGTATGTACAAGT
rJMFF035N20+ AGCCCGNGACACAANTAGGCTTCNNTAGTNTAGGAAGTAAGAAGAGTATGTACNAGTATN
rJMSF052P21+ AGCCCGTGACACAATTAGGCTTCCTTAGTTTAGGAAGTAAGAAGAGTATGTACAAGTATA
rJMFF013B11+ TAGTTTAGGAAGTAAGAAGAGTATGTACAAGTATA
                      ____________________________________________________________
consensus AGCCCGTGACACAATTAGGCTTCCTTAGTTTAGGAAGTAAGAAGAGTATGTACAAGTATA
 
. : . : . : . : . : . :
rJMFF017N12+ ACCACCACCACCACCACAACCACTGCCACCGCCTTCGCCTTGTGANTAAGTAACATCATC
rJMSF029M13+ ACCACCACCACCACCACAACCACTGCCACCGCCTTCGCCTTGTGANTAAGTAACATCATC
rJMFF035N20+ TCCNCCACCACCACCGCAACCACTGCCACCGCCTTCGCCTTGNGANTAAGTNACATCATC
rJMSF052P21+ ACCACCACCACCACCACAACCACTGCCACCGCCTTCGCCTTGTGACTAAGTAACATCATC
rJMFF013B11+ NCCNCCACCACCACCACAACCACTGCCACCGCCTTCGCCTTGTGANTAAGTAACATCATC
                      ____________________________________________________________
consensus ACCACCACCACCACCACAACCACTGCCACCGCCTTCGCCTTGTGACTAAGTAACATCATC
 
. : . : . : . : . : . :
rJMFF017N12+ AGACAACACATATATTACTATTTACTACCAATACAAATATGCATACATAGTAAAAAAAGA
rJMSF029M13+ AGACAACACATATATTACTATTTACTACCAATACAAATATGCATACATAGTAAAAAAAGA
rJMFF035N20+ AGACAACACATATATTACTATTTACTACCAATACAAATATGCATACATAGTAAAAAAAGA
rJMSF052P21+ AGACAACACATATATTACTATTTACTACCAATACAAATATGCATACATAGTAAAAAAAGA
rJMFF013B11+ AGACAACACATATATTACTATTTACTACCAATACAAATATGCATACATAGTAAAAAAAGA
                      ____________________________________________________________
consensus AGACAACACATATATTACTATTTACTACCAATACAAATATGCATACATAGTAAAAAAAGA
 
. : . : . : . : . : . :
rJMFF017N12+ AGTGGGACAGCCATTTTCCATTTTCCCTTGTTTTCTTGTGTTGTATTCTCCAGTCTCTCT
rJMSF029M13+ AGTGGGACAGCCATTTTCCATTTTCCCTNGTTTTCTTGTGTTGTATTCTCCAGTCTCTCT
rJMFF035N20+ AGTGGGACAGCCATTTTCCATTTTCCCTNGTTTTNTTGNGTTGTATTCTC
rJMSF052P21+ AGTGGGACAGCCATTTTCCATTTTCCCTTGTTTTCTTGTGTTGTATTCTCCAGTCTCTCT
rJMFF013B11+ AGTGGGACAGCCATTTTCCATTTTCCCTTGTTTTCTTGTGTTGTATTCTCCAGTCTCTCT
                      ____________________________________________________________
consensus AGTGGGACAGCCATTTTCCATTTTCCCTTGTTTTCTTGTGTTGTATTCTCCAGTCTCTCT
 
. : . : . : . : . : . :
rJMFF017N12+ CACATCTCTCTGTAGTAGAGGTTCTTGGT
rJMSF029M13+ CACATCTCTC
rJMSF052P21+ CACATCTCTCTGTAGTTGAGGTTCTTGGT
rJMFF013B11+ CACATCTCTCTGTAGTNGAGGTTCTTGGTTGGACCNCAGGTAGAGAAAGGAAAAAAGAAT
                      ____________________________________________________________
consensus CACATCTCTCTGTAGTTGAGGTTCTTGGTTGGACCNCAGGTAGAGAAAGGAAAAAAGAAT