Contig 005359:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF010N20Sequence492005359 (7)ref|XP_009588260.1|1e-54PREDICTED: 60S ribosomal protein L31-like [Nicotiana tomentosiformis] ref|XP_009460005359 (7)ref|XP_009588260.1|6e-55PREDICTED: 60S ribosomal protein L31-like [Nicotiana tomentosiformis] ref|XP_009
JMFF034J17Sequence567005359 (7)ref|XP_009588260.1|3e-54PREDICTED: 60S ribosomal protein L31-like [Nicotiana tomentosiformis] ref|XP_009524005359 (7)ref|XP_009588260.1|2e-54PREDICTED: 60S ribosomal protein L31-like [Nicotiana tomentosiformis] ref|XP_009
JMFF043J18Sequence611005359 (7)ref|XP_009588260.1|5e-54PREDICTED: 60S ribosomal protein L31-like [Nicotiana tomentosiformis] ref|XP_009504024405
JMFN020A13Sequence543005359 (7)ref|XP_009588260.1|7e-55PREDICTED: 60S ribosomal protein L31-like [Nicotiana tomentosiformis] ref|XP_009
JMFN029E20Sequence496005359 (7)ref|XP_004965340.1|5e-39PREDICTED: 60S ribosomal protein L31-like [Setaria italica]

Alignment

This contig is upended


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JMFN029E20+                               AAGAACGATGNAGCACAAGCTCTGGCAAAAGCTTTAACAA
                      ____________________________________________________________
consensus                                 AAGAACGATGNAGCACAAGCTCTGGCAAAAGCTTTAACAA
 
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JMFN029E20+           AAACACCCTAAGCAACCGAGATCTTNTAAAATTGTGGAGACAAATAAAAACGAAAAAGGA
JMFF034J17+                                                            ACGAAAAAGGA
                      ____________________________________________________________
consensus             AAACACCCTAAGCAACCGAGATCTTNTAAAATTGTGGAGACAAATAAAAACGAAAAAGGA
 
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JMFN029E20+           TGCTGGAGTCTAGTGTCTGAAAACAATGCAAAAAGATATTTAGACTGTAGAACAACAAAA
rJMFF034J17-                                        AAAAGATATTTAGACTGTAGAACAACAAAA
JMFF034J17+           TGCTGGAGTCTAGTGTCTGAAAACAATGCAAAAAGATATTTAGACTGTAGAACAACAAAA
JMFF010N20+                                                            GAACAACAAAA
                      ____________________________________________________________
consensus             TGCTGGAGTCTAGTGTCTGAAAACAATGCAAAAAGATATTTAGACTGTAGAACAACAAAA
 
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JMFN029E20+           AAGTTCTGTATCATTTCCATTCCTCTCAATTAATAACAACCTACTCATCATCATCATCGA
rJMFF034J17-          AAGTTCTGTATCATTTCCATTCCTCTCAATTAATAACAACCTACTCATCATCATCATCGA
JMFF034J17+           AAGTTCTGTATCATTTCCATTCCTCTCAATTAATAACAACCTACTCATCATCATCATCGA
JMFF010N20+           AAGTTCTGTATCATTTCCATTCCTCTCAATTAATAACAACCTACTCATCATCATCATCGA
rJMFF010N20-                                      ATTAATAACAACCTACTCATCATCATCATCGA
                      ____________________________________________________________
consensus             AAGTTCTGTATCATTTCCATTCCTCTCAATTAATAACAACCTACTCATCATCATCATCGA
 
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JMFN029E20+           TGATCGCTGTACCAAGGCCCTTCAATCCTTCGGGTGGGATCTCAGCAACTGTAACAAGAG
JMFF043J18+                               TTCAATCCTTCGGGTGGGATCTCAGCAACTGTAACAAGAG
rJMFF034J17-          TGATCGCTGTACCAAGGCCCTTCAATCCTTCGGGTGGGATCTCAGCAACTGTAACAAGAG
JMFN020A13-                               TTCAACCCTTCCGGTGGGATTTCAGAAACAGTAACAAGAG
JMFF034J17+           TGATCGCTGTACCAAGGCCCTTCAATCCTTCGGGTGGGATCTCAGCAACTGTAACAAGAG
JMFF010N20+           TGATCGCTGTACCAAGGCCCTTCAATCCTTCGGGTGGGATCTCAGCAACTGTAACAAGAG
rJMFF010N20-          TGATCGCTGTACCAAGGCCCTTCAATCCTTCGGGTGGGATCTCAGCAACTGTAACAAGAG
                      ____________________________________________________________
consensus             TGATCGCTGTACCAAGGCCCTTCAATCCTTCGGGTGGGATCTCAGCAACTGTAACAAGAG
 
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JMFN029E20+           AATAGAGCTCCTCCTTTGCATCCTCATCGTCATTCCTCTTACGAGCAATGCGAACTCTTA
JMFF043J18+           AATAGAGCTCCTCCTTTGCATCCTCATCGTCATTCCTCTTACGAGCAATGCGAACTCTTA
rJMFF034J17-          AATAGAGCTCCTCCTTTGCATCCTCATCGTCATTCCTCTTACGAGCAATGCGAACTCTTA
JMFN020A13-           AATAAAGCTCCTCCTCTGCATCCTCATCATCATTCCTCTTGCGAGCAATGCGAACTCTAA
JMFF034J17+           AATAGAGCTCCTCCTTTGCATCCTCATCGTCATTCCTCTTACGAGCAATGCGAACTCTTA
JMFF010N20+           AATAGAGCTCCTCCTTTGCATCCTCATCGTCATTCCTCTTACGAGCAATGCGAACTCTTA
rJMFF010N20-          AATAGAGCTCCTCCTTTGCATCCTCATCGTCATTCCTCTTACGAGCAATGCGAACTCTTA
                      ____________________________________________________________
consensus             AATAGAGCTCCTCCTTTGCATCCTCATCGTCATTCCTCTTACGAGCAATGCGAACTCTTA
 
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JMFN029E20+           CACGCCTTGGGACACTACGGATTCCTCTGCTCCAGATATGCTTGTTCAGCTTCACATCCA
JMFF043J18+           CACGCCTTGGGACACTACGGATTCCTCTGCTCCAGATATGCTTGTTCAGCTTCACATCCA
rJMFF034J17-          CACGCCTTGGGACACTACGGATTCCTCTGCTCCAGATATGCTTGTTCAGCTTCACATCCA
JMFN020A13-           CACGTCTTGGGACACTTCGGATTCCTCTGCTCCATATGTGCTTGTTCAGCTTCACGTCAA
JMFF034J17+           CACGCCTTGGGACACTACGGATTCCTCTGCTCCAGATATGCTTGTTCAGCTTCACATCCA
JMFF010N20+           CACGCCTTGGGACACTACGGATTCCTCTGCTCCAGATATGCTTGTTCAGCTTCACATCCA
rJMFF010N20-          CACGCCTTGGGACACTACGGATTCCTCTGCTCCAGATATGCTTGTTCAGCTTCACATCCA
                      ____________________________________________________________
consensus             CACGCCTTGGGACACTACGGATTCCTCTGCTCCAGATATGCTTGTTCAGCTTCACATCCA
 
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JMFN029E20+           CTCTCACATCAGTTGTACCCATGGCTTTCTGTGCAAATTTCCTGATCTCCTTGATGGCGT
JMFF043J18+           CTCTCACATCAGTTGTACCCATGGCTTTCTGTGCAAATTTCCTGATCTCCTTGATGGCGT
rJMFF034J17-          CTCTCACATCAGTTGTACCCATGGCTTTCTGTGCAAATTTCCTGATCTCCTTGATGGCGT
JMFN020A13-           CTCTCACATCTGTCGTCCCAATAGCTTTCTGTGCAAATTTCCTGATCTCCTTGATGGCAT
JMFF034J17+           CTCTCACATCAGTTGTACCCATGGCTTTCTGTGCAAATTTCCTGATCTCCTTGATGGCGT
JMFF010N20+           CTCTCACATCAGTTGTACCCATGGCTTTCTGTGCAAATTTCCTGATCTCCTTGATGGCGT
rJMFF010N20-          CTCTCACATCAGTTGTACCCATGGCTTTCTGTGCAAATTTCCTGATCTCCTTGATGGCGT
                      ____________________________________________________________
consensus             CTCTCACATCAGTTGTACCCATGGCTTTCTGTGCAAATTTCCTGATCTCCTTGATGGCGT
 
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JMFN029E20+           TAGGTGCCTTCTTCTTGAATGTGCATCCGTGGAGGC                        
JMFF043J18+           TAGGTGCCTTCTTCTTGAATGTGCATCCGTGGAGGCGCTTGTGGAGGTTGATGGTGTACT
rJMFF034J17-          TAGGTGCCTTCTTCTTGAATGTGCATCCGTGGAGGCGCTTGTGGAGGTTGATGGTGTACT
JMFN020A13-           TAGGTGCCTTCTTCTTGAATGTGCAGCCATGAAGACGCTTATGTAAATTGATTGTGTACT
JMFF034J17+           TAGGTGCCTTCTTCTTGAATGTGCATCCGTGGAGGCGCTTGTGGAGGTTGATGGTGTACT
JMFF010N20+           TAGGTGCCTTCTTCTTGAATGTGCATCCGTGGAGGCGCTTGTGGAGGTTGATGGTGTACT
rJMFF010N20-          TAGGTGCCTTCTTCTTGAATGTGCATCCGTGGAGGCGCTTGTGGAGGTTGATGGTGTACT
                      ____________________________________________________________
consensus             TAGGTGCCTTCTTCTTGAATGTGCATCCGTGGAGGCGCTTGTGGAGGTTGATGGTGTACT
 
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JMFF043J18+           CCCTGGTAACCACCTCCTCCTTTCTGGCTTTAGCCTTCTCCGACATTTCCAATCTCTAC 
rJMFF034J17-          CCCTGGTAACCACCTCCTCCTTTCTGGCTTTAGCCTTCTCCGACATTTCCAATCTCTACT
JMFN020A13-           CTCTGGTAACAACCTCCTCTTTTCTAGCTTT                             
JMFF034J17+           CCCTGGTAACCACCTCCTCCTTTCTGGCTTTAGCCTTCTCCGACATTTCCAATCTCTACT
JMFF010N20+           CCCTGGTAACCACCTCCTCCTTTCTGGCTTTAGCCTTCTCCGACATTTCCAATCTCTACT
rJMFF010N20-          CCCTGGTAACCACCTCCTCCTTTCTGGCTTTAGCCTTCTCCGACATTTCCAATCTCTACT
                      ____________________________________________________________
consensus             CCCTGGTAACCACCTCCTCCTTTCTGGCTTTAGCCTTCTCCGACATTTCCAATCTCTACT
 
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rJMFF034J17-          A                                                           
JMFF034J17+           AGGGTACGGA                                                  
JMFF010N20+           AGGGTACGGAGCTAGGGAGAGATGGAGGTGCGTAGGAGGGATGGTAGAGTAAAGAGACGC
rJMFF010N20-          AGGGTACGGAGCTAGGGAGAGATGGAGGTGCGTAGGAGGGATGGTAGAGTAAAGAGACGC
                      ____________________________________________________________
consensus             AGGGTACGGAGCTAGGGAGAGATGGAGGTGCGTAGGAGGGATGGTAGAGTAAAGAGACGC