Contig 005349:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF008I07Sequence580005349 (4)emb|CDP16323.1|5e-60unnamed protein product [Coffea canephora]796005349 (4)emb|CDP16323.1|3e-83unnamed protein product [Coffea canephora]
JMSF047O20Sequence596005349 (4)emb|CDP16323.1|5e-59unnamed protein product [Coffea canephora]721005349 (4)emb|CDP16323.1|2e-93unnamed protein product [Coffea canephora]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF047O20- GAGTTTTCTAGTCGTCTACTATTCACACTTCATCGTCTTTACCTCGATCACCACCTCATT
JMFF008I07- ACACTTCATCGTCTTTACCTCGATCACCACCTCATT
                      ____________________________________________________________
consensus GAGTTTTCTAGTCGTCTACTATTCACACTTCATCGTCTTTACCTCGATCACCACCTCATT
 
. : . : . : . : . : . :
JMSF047O20- CCTCTTTATCTTCGTATGCAATATTTCCAGACCACTTCACTCTCTCCCTCACCTTAACAC
JMFF008I07- CCTCTTTATCTTCGTATGCAATATTTCCAGACCACTTCACTCTCTCCCTCACCTTAACAC
                      ____________________________________________________________
consensus CCTCTTTATCTTCGTATGCAATATTTCCAGACCACTTCACTCTCTCCCTCACCTTAACAC
 
. : . : . : . : . : . :
JMSF047O20- CACTTCCAGAAAAAAACAACATCATCGTAACAAAATATCAAACAGGTTATTCTTCCTTAA
JMFF008I07- CACTTCCAGAAAAAAACAACATCATCGTAACAAAATATCAAACAGGTTATTCTTCCTTAA
                      ____________________________________________________________
consensus CACTTCCAGAAAAAAACAACATCATCGTAACAAAATATCAAACAGGTTATTCTTCCTTAA
 
. : . : . : . : . : . :
JMSF047O20- TTTCCACGAAAATAATGGAGGTTTTCTTTCTCATAGCTTTGTTATTGTTTACGGTTCAAA
JMFF008I07- TTTCCACGAAAATAATGGAGGTTTTCTTTCTCATAGCTTTGTTATTGTTTACGGTTCAAA
                      ____________________________________________________________
consensus TTTCCACGAAAATAATGGAGGTTTTCTTTCTCATAGCTTTGTTATTGTTTACGGTTCAAA
 
. : . : . : . : . : . :
JMSF047O20- TGATGATCGAGCCGTCACGTGCCGCCATCGACACTTTCGTCTACGGCGGCTGCTCGCAGA
JMFF008I07- TGATGATCGAGCCGTCACGTGCCGCCATCGACACTTTCGTCTACGGCGGCTGCTCGCAGA
                      ____________________________________________________________
consensus TGATGATCGAGCCGTCACGTGCCGCCATCGACACTTTCGTCTACGGCGGCTGCTCGCAGA
 
. : . : . : . : . : . :
JMSF047O20- TTAAGTTCACGCCGGGGACGCCGTACGAGTCGAACGTCAACTCGGTCCTCACCTCGTTCG
JMFF008I07- TTAAGTTCACGCCGGGGACGCCGTACGAGTCGAACGTCAACTCGGTCCTCACCTCGTTCG
                      ____________________________________________________________
consensus TTAAGTTCACGCCGGGGACGCCGTACGAGTCGAACGTCAACTCGGTCCTCACCTCGTTCG
 
. : . : . : . : . : . :
JMSF047O20- TCAACTCAGCTGCCACCGCCAACTTCAACAACTACAAGATATCCGTGCCGGGCTCCTCCC
JMFF008I07- TCAACTCAGCTGCCACCGCCAACTTCAACAACTACAAGATATCCGTGCCGGGCTCCTCCC
rJMSF047O20+ TCCC
                      ____________________________________________________________
consensus TCAACTCAGCTGCCACCGCCAACTTCAACAACTACAAGATATCCGTGCCGGGCTCCTCCC
 
. : . : . : . : . : . :
JMSF047O20- AGAGCGACATTGTTTACGGCCTTTACCAGTGCCGCGGCGATCTGGGCAGCGCGGATTGCC
JMFF008I07- AGAGCGACATTGTTTACGGCCTTTACCAGTGCCGCGGCGATCTGGGCAGCGCGGATTGCC
rJMSF047O20+ AGAGCGACATTGTTTACGGCCTTTACCAGTGCCGCGGCGATCTGGGCAGCGCGGATTGCC
rJMFF008I07+ CAGCGCGGATTGCC
                      ____________________________________________________________
consensus AGAGCGACATTGTTTACGGCCTTTACCAGTGCCGCGGCGATCTGGGCAGCGCGGATTGCC
 
. : . : . : . : . : . :
JMSF047O20- GGAACTGCGTGGGCCGGGCGGTGAGTCAACTCGGGATGCTGTGCGTCGACACCTCCGGCG
JMFF008I07- GGAACTGCGTGGGCCGGGCGGTGAGTCAACTCGGGATGCTGTGCGTCGACACCTCCGGCG
rJMSF047O20+ GGAACTGCGTGGGCCGGGCGGTGAGTCAACTCGGGATGCTGTGCGTCGACACCTCCGGCG
rJMFF008I07+ GGAACTGCGTGGNCCGGGCGGTGAGTCAACTCGGGATGCTGTGCGTCGACACNTCCGGCG
                      ____________________________________________________________
consensus GGAACTGCGTGGGCCGGGCGGTGAGTCAACTCGGGATGCTGTGCGTCGACACCTCCGGCG
 
. : . : . : . : . : . :
JMSF047O20- GCGCGTTGCAGCTCGACGGGTGTTTCGTGAAGTACGATAACGTCTCGTTCCTCGGG
JMFF008I07- GCGCGTTGCAGCTCGACGGGTGTTTCGTGAAGTACGATAACGTCTCGTTCCTCGGGGCGG
rJMSF047O20+ GCGCGTTGCAGCTCGACGGGTGTTTCGTGAAGTACGATAACGTCTCGTTCCTCGGGGCGG
rJMFF008I07+ GCGCGTTGCAGCTCGACGGGTGTTTCGTGAAGTACGATAACGTCTCGTTCCTCGGGGCGG
                      ____________________________________________________________
consensus GCGCGTTGCAGCTCGACGGGTGTTTCGTGAAGTACGATAACGTCTCGTTCCTCGGGGCGG
 
. : . : . : . : . : . :
JMFF008I07- AGGA
rJMSF047O20+ AGGACAAGACGGTGGTGTCGCACAAGTGTGGGCCGCCGATCTCGTACGGCTCCGACGACG
rJMFF008I07+ AGGACAAGACGGTGGTGTCGCACAAGTGTGGGCCGCCGATCTCGTACGGCTCCGACGACG
                      ____________________________________________________________
consensus AGGACAAGACGGTGGTGTCGCACAAGTGTGGGCCGCCGATCTCGTACGGCTCCGACGACG
 
. : . : . : . : . : . :
rJMSF047O20+ AGACGCGCCGGGATGCCGTGCTGTCGTATCTGACGGCCGGGGGACAGTACTTCCGGGTCG
rJMFF008I07+ AGACGCGCCGGGATGCCGTGCTGTCGTATCTGACGGCCGGGGGACAGTACTTCCGGGTCG
                      ____________________________________________________________
consensus AGACGCGCCGGGATGCCGTGCTGTCGTATCTGACGGCCGGGGGACAGTACTTCCGGGTCG
 
. : . : . : . : . : . :
rJMSF047O20+ GTGGGTCGGGGCGGGTCCAGGGTGTGGCGCATTGCACGCAAGACCTGAGCCAAGCGGAGT
rJMFF008I07+ GTGGGTCGGGGCGGGTCCAGGGTGTGGCGCAGTGCACGCAAGACCTGAGCCAAGCGGAGT
                      ____________________________________________________________
consensus GTGGGTCGGGGCGGGTCCAGGGTGTGGCGCATTGCACGCAAGACCTGAGCCAAGCGGAGT
 
. : . : . : . : . : . :
rJMSF047O20+ GCCAGGATTGCTTGTCGGACGCCATCGGACGGCTGAGAAACGAGTGTGGCTCCGCGCCGT
rJMFF008I07+ GCCAGGATTGCTTGTCGGACGCCATCGGACGGCTGAGAAACGAGTGTGGCTCCGCGCCGT
                      ____________________________________________________________
consensus GCCAGGATTGCTTGTCGGACGCCATCGGACGGCTGAGAAACGAGTGTGGCTCCGCGCCGT
 
. : . : . : . : . : . :
rJMSF047O20+ GGGGAGATATGTTCCTGTCCAAGTGCTACGCGCGTTACTCGGAGCGTGGGTTCTCCTCAA
rJMFF008I07+ GGGGAGATATGTTCCTGTCCAAGTGCTACGCGCGTTACTCGGAGCGTGGGTTCTCCTCAA
                      ____________________________________________________________
consensus GGGGAGATATGTTCCTGTCCAAGTGCTACGCGCGTTACTCGGAGCGTGGGTTCTCCTCAA
 
. : . : . : . : . : . :
rJMSF047O20+ AAAGCGATGATAACGATGAAGAAGTTGAGAGAACACTTGCAATCACAATAGGACTCATTG
rJMFF008I07+ AAAGCGATGATAACGATGAAGAAGTTGAGAGAACACTTGCAATCACAATAGGACTCATTG
                      ____________________________________________________________
consensus AAAGCGATGATAACGATGAAGAAGTTGAGAGAACACTTGCAATCACAATAGGACTCATTG
 
. : . : . : . : . : . :
rJMSF047O20+ CTGGTGTGGCTGTACTGGTTGTTTTCCTCTCTGTTTTGAGCAAACTTTGTGAACCAAAAG
rJMFF008I07+ CTGGTGTGGCTGTACTGGTTGTTTTCCTCTCTGTTTTGAGCAAACTTTGTGAACCAAAAG
                      ____________________________________________________________
consensus CTGGTGTGGCTGTACTGGTTGTTTTCCTCTCTGTTTTGAGCAAACTTTGTGAACCAAAAG
 
. : . : . : . : . : . :
rJMSF047O20+ GTGGAAAATAAAGAGCATTTTGTGGATATACTAGTAAAGTGTATGTTGTTGCATCCTTTG
rJMFF008I07+ GTGGAAAATAAAGAGCATTTTGTGGATATACTAGTAAAGTGTATGTTGTTGCATCCTTTG
                      ____________________________________________________________
consensus GTGGAAAATAAAGAGCATTTTGTGGATATACTAGTAAAGTGTATGTTGTTGCATCCTTTG
 
. : . : . : . : . : . :
rJMSF047O20+ GGTAAATTGTTTTGCTTTAGGTGCTCTTTTGCTTTTGTATTAGTATTATTATTATTA
rJMFF008I07+ GGTAAATTGTTTTGCTTTAGGTGCTCTTTTGCTTTTGTATTAGTATTATTATTATTATTG
                      ____________________________________________________________
consensus GGTAAATTGTTTTGCTTTAGGTGCTCTTTTGCTTTTGTATTAGTATTATTATTATTATTG
 
. : . : . : . : . : . :
rJMFF008I07+ GCCTAGCTACTTTGCTCTTTTTAATGTGCTTTTTGAAGAGTTCCCCCTTAGCTTCTTGTA
                      ____________________________________________________________
consensus GCCTAGCTACTTTGCTCTTTTTAATGTGCTTTTTGAAGAGTTCCCCCTTAGCTTCTTGTA
 
. : . : . : . : . : . :
rJMFF008I07+ TGGACTGTAAAGAGGTACATTGAAACAAGTGAAGTAATTAAAGGCTGTGAAATAACACAT
                      ____________________________________________________________
consensus TGGACTGTAAAGAGGTACATTGAAACAAGTGAAGTAATTAAAGGCTGTGAAATAACACAT