Contig 005348:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF008H15Sequence622000032 (14)ref|XP_009772632.1|4e-95PREDICTED: phosphomethylpyrimidine synthase, chloroplastic [Nicotiana sylvestri769005348 (9)ref|XP_009627036.1|8e-111PREDICTED: phosphomethylpyrimidine synthase, chloroplastic [Nicotiana tomentosi
JMFF012L24Sequence604000032 (14)ref|XP_009772632.1|2e-81PREDICTED: phosphomethylpyrimidine synthase, chloroplastic [Nicotiana sylvestri775005348 (9)ref|XP_009627036.1|2e-121PREDICTED: phosphomethylpyrimidine synthase, chloroplastic [Nicotiana tomentosi
JMFF024J20Sequence450000032 (14)ref|XP_009772632.1|3e-53PREDICTED: phosphomethylpyrimidine synthase, chloroplastic [Nicotiana sylvestri697005348 (9)ref|XP_009627036.1|1e-96PREDICTED: phosphomethylpyrimidine synthase, chloroplastic [Nicotiana tomentosi
JMFF031K17Sequence608000032 (14)ref|XP_009772632.1|6e-92PREDICTED: phosphomethylpyrimidine synthase, chloroplastic [Nicotiana sylvestri706005348 (9)ref|XP_009627036.1|2e-90PREDICTED: phosphomethylpyrimidine synthase, chloroplastic [Nicotiana tomentosi
JMFF031N16Sequence505000032 (14)ref|XP_009772632.1|1e-63PREDICTED: phosphomethylpyrimidine synthase, chloroplastic [Nicotiana sylvestri745005348 (9)ref|XP_009627036.1|4e-93PREDICTED: phosphomethylpyrimidine synthase, chloroplastic [Nicotiana tomentosi
JMFF032L17Sequence529000032 (14)ref|XP_009772632.1|1e-72PREDICTED: phosphomethylpyrimidine synthase, chloroplastic [Nicotiana sylvestri767005348 (9)ref|XP_009627036.1|7e-121PREDICTED: phosphomethylpyrimidine synthase, chloroplastic [Nicotiana tomentosi
JMSF003P12Sequence242000032 (14)ref|XP_009772632.1|4e-14PREDICTED: phosphomethylpyrimidine synthase, chloroplastic [Nicotiana sylvestri748005348 (9)ref|XP_009627036.1|8e-118PREDICTED: phosphomethylpyrimidine synthase, chloroplastic [Nicotiana tomentosi
JMSF032A07Sequence653000032 (14)ref|XP_009772632.1|2e-105PREDICTED: phosphomethylpyrimidine synthase, chloroplastic [Nicotiana sylvestri737005348 (9)ref|XP_009627036.1|9e-119PREDICTED: phosphomethylpyrimidine synthase, chloroplastic [Nicotiana tomentosi
JMSF041H21Sequence758000032 (14)ref|XP_009772632.1|2e-129PREDICTED: phosphomethylpyrimidine synthase, chloroplastic [Nicotiana sylvestri767005348 (9)ref|XP_009627036.1|4e-120PREDICTED: phosphomethylpyrimidine synthase, chloroplastic [Nicotiana tomentosi

Alignment

This contig is upended


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rJMFF032L17+                                                            CAACTGACAT
rJMFF031N16+                                                                 GACAT
rJMSF041H21+                                                                 GACAT
rJMFF012L24+                                                                 GACAT
                      ____________________________________________________________
consensus                                                               CAACTGACAT
 
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rJMSF032A07+              CCCGGATATGATCACATAACCTCAGCCATT-GGAGCTGCTAATATTGGAGCACTTG
rJMFF032L17+          AGCTCCCGGATATGATCACATAACCTCAGCCATT-GGAGCTGCTAATATTGGAGCACTTG
rJMFF031N16+          AGCTNCCGGATATGATCACATAACNTCAGCCATT-GGAGCTGCTAATATTGGAGCACTTG
rJMSF003P12+            CTCCCGGATATGATCACATAACNTCAGCCATN-GGAGCTGCTAATATTGGAGCACTTG
rJMSF041H21+          AGCTCCCGGATATGATCACATAACNTCAGCCATN-GGAGCTGCTAATATTGGAGCACTTG
rJMFF031K17+                                                               GCACTTG
rJMFF012L24+          AGCTCCCGGATATGATCACATAACNTCAGCCATT-GGAGCTGCTAATATTGGAGCACTTG
rJMFF008H15+                   ATATGATCACATAACCTCAGCCATTGGGAGCTGCTAATATTGGAGCACTTG
                      ____________________________________________________________
consensus             AGCTCCCGGATATGATCACATAACCTCAGCCATT-GGAGCTGCTAATATTGGAGCACTTG
 
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rJMSF032A07+          GCACTGCACTGTTGTGTTATGTGACTCCAAAAGAGCATCTTGGGTTGCCTAATC-GGGAT
rJMFF032L17+          GCACTGCACTGTTGTGTTATGTGACTCCAAAAGAGCATCTTGGGTTGCCTAATC-GGGAT
rJMFF031N16+          GCACTGCACTGTTGTGTTATGTGACTCCAAAAGAGCATCTTGGGTNGCCTAATC-GGGAT
rJMSF003P12+          GCACTGCACTGTTGTGTTATGTGACTCCAAAAGAGCATCTTGGGTTGCCTAATC-GGGAT
rJMSF041H21+          GCACTGCACTGTTGTGTTATGTGACTCCAAAAGAGCATCTTGGGTTGCCTAATC-GGGAT
rJMFF031K17+          GCACTGCACTGTTGTGTTATGTGACTCCAAAAGAGCATCTTGGGTTGCNTAATCGGGGAT
rJMFF012L24+          GCACTGCACTGTTGTGTTATGTGACTCCAAAAGAGCATCTTGGGTTGCCTAATC-GGGAT
rJMFF024J20+                                   TCCAAAAGAGCATCTNGGGTTGCCTAATC-GGGAN
rJMFF008H15+          GCACTGCACTGTTGTGTTATGTGACTCCAAAAGAGCATCTTGGGTTGCCTAATC-GGGAT
                      ____________________________________________________________
consensus             GCACTGCACTGTTGTGTTATGTGACTCCAAAAGAGCATCTTGGGTTGCCTAATC-GGGAT
 
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rJMSF032A07+          GATGTGAAGGCTGGAGTTATAGCATATAAGATAGCGGCTCATGCTGCTGATCTAGCAAAA
rJMFF032L17+          GATGTGAAGGCTGGAGTTATAGCATATAAGATAGCGGCTCATGCTGCTGATCTAGCAAAA
rJMFF031N16+          GATGTGAAGGCTGGAGTTATAGCATATAAGATAGCGGCTCATGCTGCTGATNTAGCAAAA
rJMSF003P12+          GATGTGAAGGCTGGAGTTATAGCATATAAGATAGCGGCTCATGCTGCTGATCTAGCAAAA
rJMSF041H21+          GATGTGAAGGCTGGAGTTATAGCATATAAGATAGCGGCTCATGCTGCTGATCTAGCAAAA
rJMFF031K17+          GATGTGAAGGCTGGAGTTATAGCATATAAGATAGCGGCTCATGCTGCTGATCTAGCAAAA
rJMFF012L24+          GATGTGAAGGCTGGAGTTATAGCATATAAGATAGCGGCTCATGCTGCTGATCTAGCAAAA
rJMFF024J20+          GATGTGAAGGCNGGAGTTATAGCATATAAGATAGCGGCTCATGCTGCTGATCTAGCAAAA
rJMFF008H15+          GATGTGAAGGCTGGAGTTATAGCATATAAGATAGCGGCTCATGCTGCTGATCTAGCAAAA
                      ____________________________________________________________
consensus             GATGTGAAGGCTGGAGTTATAGCATATAAGATAGCGGCTCATGCTGCTGATCTAGCAAAA
 
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rJMSF032A07+          GGTCACCCTCTGGCACAAACCTGGGATGATACGCTAAGCAAGGCAAGATTTGAGTTCCGA
rJMFF032L17+          GGTCACCCTCTGGCACAAACCTGGGATGATACGCTAAGCAAGGCAAGATTTGAGTTCCGA
rJMFF031N16+          GGTCACCCTCTGGCACAAACCTGGGATGATACGCTAAGCAAGGCAAGATTTGAGTTCCGA
rJMSF003P12+          GGTCACCCTCTGGCACAAACCTGGGATGATACGCTAAGCAAGGCAAGATTTGAGTTCCGA
rJMSF041H21+          GGTCACCCTCTGGCACAAACCTGGGATGATACGCTAAGCAAGGCAAGATTTGAGTTCCGA
rJMFF031K17+          GGTCACCCTCTGGCACAAACCTGGGATGATACGCTAAGCAAGGCAAGATTTGAGTTCCGA
rJMFF012L24+          GGTCACCCTCTGGCACAAACCTGGGATGATACGCTAAGCAAGGCAAGATTTGAGTTCCGA
rJMFF024J20+          GGTCACCCTCTGGCACAAACNTGGGATGATACGCTAAGCAAGGCAAGATTTGAGTTCCGA
rJMFF008H15+          GGTCACCCTCTGGCACAAACCTGGGATGATACGCTAAGCAAGGCAAGATTTGAGTTCCGA
                      ____________________________________________________________
consensus             GGTCACCCTCTGGCACAAACCTGGGATGATACGCTAAGCAAGGCAAGATTTGAGTTCCGA
 
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rJMSF032A07+          TGGATAGACCAGTTTGCTTTGTCACTCGACCCCATGACTGCCATGTCCTTCCATGATGAA
rJMFF032L17+          TGGATAGACCAGTTTGCTTTGTCACTCGACCCCATGACTGCCATGTCCTTCCATGATGAA
rJMFF031N16+          TGGATAGACCAGTTTGCTTTGTCACTCGACCCCATGACTGCCATGTCCTTCCATGATGAA
rJMSF003P12+          TGGATAGACCAGTTTGCTTTGTCACTCGACCCCATGACTGCCATGTCCTTCCATGATGAA
rJMSF041H21+          TGGATAGACCAGTTTGCTTTGTCACTCGACCCCATGACTGCCATGTCCTTCCATGATGAA
rJMFF031K17+          TGGATAGACCAGTTTGCTTTGTCACTCGACCCCATGACTGCCATGTCCTTCCATGATGAA
rJMFF012L24+          TGGATAGACCAGTTTGCTTTGTCACTCGACCCCATGACTGCCATGTCCTTCCATGATGAA
rJMFF024J20+          TGGATAGACCAGTTTGCTTTGTCACTCGACCCCATGACTGCCATGTCCTTCCATGATGAA
rJMFF008H15+          TGGATAGACCAGTTTGCTTTGTCACTCGACCCCATGACTGCCATGTCCTTCCATGATGAA
                      ____________________________________________________________
consensus             TGGATAGACCAGTTTGCTTTGTCACTCGACCCCATGACTGCCATGTCCTTCCATGATGAA
 
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rJMSF032A07+          ACTCTACCGTCTGATGGTGCTAAAGTGGCCCATTTCTGCTCCATGTGTGGGCCTAAATTC
rJMFF032L17+          ACTCTACCGTCTGATGGTGCTAAAGTGGCCCATTTCTGCTCCATGTGTGGGCCTAAATTC
rJMFF031N16+          ACTCTACCGTCTGATGGTGCTAAAGTGGCCCATTTCTGCTCCATGTGTGGGCCTAAATTC
rJMSF003P12+          ACTCTACCGTCTGATGGTGCTAAAGTGGCCCATTTCTGCTCCATGTGTGGGCCTAAATTC
rJMSF041H21+          ACTCTACCGTCTGATGGTGCTAAAGTGGCCCATTTCTGCTCCATGTGTGGGCCTAAATTC
rJMFF031K17+          ACTCTACCGTCTGATGGTGCTAAAGTGGCCCATTTCTGCTCCATGTGTGGGCCTAAATTC
rJMFF012L24+          ACTCTACCGTCTGATGGTGCTAAAGTGGCCCATTTCTGCTCCATGTGTGGGCCTAAATTC
rJMFF024J20+          ACTCTACCGTCTGATGGTGCTAAAGTGGCCCATTTCTGCTCCATGTGTGGGCCTAAATTC
rJMFF008H15+          ACTCTACCGTCTGATGGTGCTAAAGTGGCCCATTTCTGCTCCATGTGTGGGCCTAAATTC
                      ____________________________________________________________
consensus             ACTCTACCGTCTGATGGTGCTAAAGTGGCCCATTTCTGCTCCATGTGTGGGCCTAAATTC
 
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rJMSF032A07+          TGTTCGATGAAGATTACTGAAGATATACGGAAGTATGCTGAGGATCACGGGTATGGAAGT
rJMFF032L17+          TGTTCGATGAAGATTACTGAAGATATACGGAAGTATGCTGAGGATCACGGGTATGGAAGT
rJMFF031N16+          TGTTCGATGAAGATTACTGAAGATATACGGAAGTATGCTGAGGATCACGGGTATGGAAGT
rJMSF003P12+          TGTTCGATGAAGATTACTGAAGATATACGGAAGTATGCTGAGGATCACGGGTATGGAAGT
rJMSF041H21+          TGTTCGATGAAGATTACTGAAGATATACGGAAGTATGCTGAGGATCACGGGTATGGAAGT
rJMFF031K17+          TGTTCGATGAAGATTACTGAAGATATACGGAAGTATGCTGAGGATCACGGGTATGGAAGT
rJMFF012L24+          TGTTCGATGAAGATTACTGAAGATATACGGAAGTATGCTGAGGATCACGGGTATGGAAGT
rJMFF024J20+          TGTTCGATGAAGATTACTGAAGATATACGGAAGTATGCTGAGGATCACGGGTATGGAAGT
rJMFF008H15+          TGTTCGATGAAGATTACTGAAGATATACGGAAGTATGCTGAGGATCACGGGTATGGAAGT
                      ____________________________________________________________
consensus             TGTTCGATGAAGATTACTGAAGATATACGGAAGTATGCTGAGGATCACGGGTATGGAAGT
 
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rJMSF032A07+          GCAGAGGAAGCCATCCGACGTGGGATGGATGCTATGAGTGCTGAGTTCCAAGCTGCAAAG
rJMFF032L17+          GCAGAGGAAGCCATCCGACGTGGGATGGATGGTATGAGTGCTGAGTTCCAAGCTGCAAAG
rJMFF031N16+          GCAGAGGAAGCCATCCGACGTGGGATGGATGCTATGAGTGCTGAGTTCCAAGCTGCAAAG
rJMSF003P12+          GCAGAGGAAGCCATCCGACGTGGGATGGATGCTATGAGTGCTGAGTTCCAAGCTGCAAAG
rJMSF041H21+          GCAGAGGAAGCCATCCGACGTGGGATGGATGCTATGAGTGCTGAGTTCCAAGCTGCAAAG
rJMFF031K17+          GCAGAGGAAGCCATCCGACGTGGGATGGATGCTATGAGTGCTGAGTTCCAAGCTGCAAAG
rJMFF012L24+          GCAGAGGAAGCCATCCGACGTGGGATGGATGCTATGAGTGCTGAGTTCCAAGCTGCAAAG
rJMFF024J20+          GCAGAGGAAGCCATCCGACGTGGGATGGATGCTATGAGTGCTGAGTTCCAAGCTGCAAAG
rJMFF008H15+          GCAGAGGAAGCCATCCGACGTGGGATGGATGCTATGAGTGCTGAGTTCCAAGCTGCAAAG
                      ____________________________________________________________
consensus             GCAGAGGAAGCCATCCGACGTGGGATGGATGCTATGAGTGCTGAGTTCCAAGCTGCAAAG
 
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rJMSF032A07+          AAAACTGTGAGTGGTGAACAACACGGTGAGGTTGGAGGGGAAATCTATCTGCCAACAAAT
rJMFF032L17+          AAAACTGTGAGTGGTGAACAACACGGTGAGGTTGGAGGGGAAATCTATCTGCCAACAAAT
rJMFF031N16+          AAAACTGTGAGTGGTGAACANCACGGTGAGGTTGGAGGGGAAATCTATCTGCCAACAAAT
rJMSF003P12+          AAAACTGTGAGTGGTGAACAACACGGTGAGGTTGGAGGGGAAATCTATCTGCCAACAAAT
rJMSF041H21+          GAAACTGTGAGTGGTGAACAACACGGTGAGGTTGGAGGGGAAATCTATCTGCCAACAAAT
rJMFF031K17+          AAAACTGTGAGTGGTGAACAACACGGTGAGGTTGGAGGGGAAATCTATCTGCCAACAAAT
rJMFF012L24+          AAAACTGTGAGTGGTGAACAACACGGTGAGGTTGGAGGGGAAATCTATCTGCCAACAAAT
rJMFF024J20+          AAAACTGTGAGTGGTGAACAACACGGTGAGGTTGGAGGGGAAATCTATCTGCCAACAAAT
rJMFF008H15+          AAAACTGTGAGTGGTGAACAACACGGTGAGGTTGGAGGGGAAATCTATCTGCCAACAAAT
                      ____________________________________________________________
consensus             AAAACTGTGAGTGGTGAACAACACGGTGAGGTTGGAGGGGAAATCTATCTGCCAACAAAT
 
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rJMSF032A07+          TACGTAAACTCTTTGAAGATCTAA-----------AGGATGATAAGGACACATGAAGAAC
rJMFF032L17+          TACGTAAACTCTTTGAAGATCTAA-----------AGGATGATAAGGACACATGAAGAAC
rJMFF031N16+          TACGTAAACTCTTTGAAGATCTAA-----------AGGATGATAAGGACACATGAAGAAC
rJMSF003P12+          TACGTAAACTCTTTGAAGATCTAAAGGGGCTTTGCAGGATGATAAGGACACATGAAGAAC
rJMSF041H21+          TACGTAAACTCTTTGAAGATCTAAAGGGGCTTTGCAGGATGATAAGGACACATGAAGAAC
rJMFF031K17+          TACGTAAACTCTTTGAAGATCTAA-----------AGGATGATAAGGACACATGAAGAAC
rJMFF012L24+          TACGTAAACTCTTTGAAGATCTAA-----------AGGATGATAAGGACACATGAAGAAC
rJMFF024J20+          TACGTAAACTCTTTGAAGATCTAAAGGGGCTTTGCAGGATGATAAGGACACATGAAGAAC
rJMFF008H15+          TACGTAAACTCTTTGAAGATCTAAAGGGGCTTTGCAGGATGATAAGGACACATGAAGAAC
                      ____________________________________________________________
consensus             TACGTAAACTCTTTGAAGATCTAA-----------AGGATGATAAGGACACATGAAGAAC
 
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rJMSF032A07+          TAACTGGTTTGGAACTTGTATGAGACATCCAGGCAATTCAGGCCAGTCTAGCAAGAATCT
rJMFF032L17+          TAACTGGTTTGGAACTTGTATGAGACATCCAGGCAATTCAGGCCAGTCTAGCAAGAATCT
rJMFF031N16+          TAACTGGTTTGGAACTTGTATGAGACATCCAGGCAATTCAGGCCAGTCTAGCAAGAATCT
rJMSF003P12+          TAACTGGTTTGGAACTTGTATGAGACATCCAGGCAATTCAGGCCAGTCTAGCAAGAATCT
rJMSF041H21+          TAACTGGTTTGGAACTTGTATGAGACATCCAGGCAATTCAGGCCAGTCTAGCAAGAATCT
rJMFF031K17+          TAACTGGTTTGGAACTTGTATGAGACATCCAGGCAATTCAGGCCAGTCTAGCAAGAATCT
rJMFF012L24+          TAACTGGTTTGGAACTTGTATGAGACATCCAGGCAATTCAGGCCAGTCTAGCAAGAATCT
rJMFF024J20+          TAACTGGTTTGGAACTTGTATGAGACATCCAGGCAATTCAGGCCAGTCTAGCAAGAATCT
rJMFF008H15+          TAACTGGTTTGGAACTTGTATGAGACATCCAGGCAATTCAGGCCAGTCTAGCAAGAATCT
                      ____________________________________________________________
consensus             TAACTGGTTTGGAACTTGTATGAGACATCCAGGCAATTCAGGCCAGTCTAGCAAGAATCT
 
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rJMSF032A07+          CAAGATCTTCATCCCCCCATCATGATAGGTAAGTATTTACTAGTTTTGGCTAGTGTTGAA
rJMFF032L17+          CAAGATCTTCATCCCCCCATCATGATAGGTAAGTATTTACTAGTTTTGGCTAGTGTTGAA
rJMFF031N16+          CAAGATCTTCATCCCCCCATCATGATAGGTAAGTATTTACTAGTTTTGGCTAGTGTTGAA
rJMSF003P12+          CAAGATCTTCATCCCCCCATCATGATAGGTAAGTATTTACTAGTTTTGGCTAGTGTTGAA
rJMSF041H21+          CAAGATCTTCATCCCCCCATCATGATAGGTAAGTATTTACTAGTTTTGGCTAGTGTTGAA
rJMFF031K17+          CAAGATCTTCATCCCCCCATCATGATAGGTAAGTATTTACTAGTTTTGGCTAGTGTTGAA
rJMFF012L24+          CAAGATCTTCATCCCCCCATCATGATAGGTAAGTATTTACTAGTTTTGGCTAGTGTTGAA
rJMFF024J20+          CAAGATCTTCATCCCCCCATCATGATAGGTAAGTATTTACTAGTTTTGGCTAGTGTTGAA
rJMFF008H15+          CAAGATCTTCATCCCCCCATCATGATAGGTAAGTATTTACTAGTTTTGGCTAGTGTTGAA
                      ____________________________________________________________
consensus             CAAGATCTTCATCCCCCCATCATGATAGGTAAGTATTTACTAGTTTTGGCTAGTGTTGAA
 
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rJMSF032A07+          TAAAAATATCTAGAC                                             
rJMFF032L17+          TAAAAATATCTAGA-CAATGTCATGTTCAAGAATGTCTCTTTTTATCAGTA         
rJMFF031N16+          TAAAAATATCTAGA-CAATGTCATGTTCAAGAAT                          
rJMSF003P12+          TAAAAATATCTAGAC                                             
rJMSF041H21+          TAAAAATATCTAGACCAATGTCATGTTCAAGAATGTCTCTT                   
rJMFF031K17+          TAAAAATATCTAGA-CAATGTCATGTTCAAGAATGTCTCTTTTTATCAGTA         
rJMFF012L24+          TAAAAATATCTAGA-CAATGTCATGTTCAAGAATGTCTCTTTTTATCAGTAATGAAAA  
rJMFF024J20+          TAAAAATATCTAGA-CAATGTCATGTTCAAGAATGTCTCTTTTTATCAGTAATGAAAA  
rJMFF008H15+          TAAAAATATCTAGA-CAATGTCATGTTCAAGAATGTCTCTTTTTATCAGTAATGAAAACC
                      ____________________________________________________________
consensus             TAAAAATATCTAGA-CAATGTCATGTTCAAGAATGTCTCTTTTTATCAGTAATGAAAACC