Contig 005342:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF006K03Sequence566000042 (2)ref|XP_011075757.1|3e-11PREDICTED: DNA-binding protein SMUBP-2 [Sesamum indicum] ref|XP_011075758.1| PRE762005342 (2)ref|XP_009771939.1|3e-115PREDICTED: DNA-binding protein SMUBP-2 [Nicotiana sylvestris]
JMFF009K04Sequence597000042 (2)685005342 (2)ref|XP_009771939.1|3e-97PREDICTED: DNA-binding protein SMUBP-2 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMFF006K03+                           GTAAAGCCCACATGGATAACTCGGTGCCCACTGCTATTGCTTG
                      ____________________________________________________________
consensus                              GTAAAGCCCACATGGATAACTCGGTGCCCACTGCTATTGCTTG
 
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rJMFF009K04+                                      TACTGGTTGTGAAGAGCATTTAGACCCAGCTG
rJMFF006K03+          ATACAAGGATGCCCTATGGAAGTTTATCTACTGGTTGTGAAGAGCATTTAGACCCAGCTG
                      ____________________________________________________________
consensus             ATACAAGGATGCCCTATGGAAGTTTATCTACTGGTTGTGAAGAGCATTTAGACCCAGCTG
 
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rJMFF009K04+          GTACTGGTTCCTTTTACAATGAAGGGGAAGCAGACATTGTTGTTAAACACGTCCTGTCTC
rJMFF006K03+          GTACTGGTTCCTTTTACAATGAAGGGGAAGCAGACATTGTTGTTAAACACGTCCTGTCTC
                      ____________________________________________________________
consensus             GTACTGGTTCCTTTTACAATGAAGGGGAAGCAGACATTGTTGTTAAACACGTCCTGTCTC
 
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rJMFF009K04+          TAGTTTATTCTGGTGTTAGTCCTGTAGCCATTGCTGTGCAATCTCCATATGTTGCTCAAG
rJMFF006K03+          TAGTTTATTCTGGTGTTAGTCCTGTAGCCATTGCTGTGCAATCTCCATATGTTGCTCAAG
                      ____________________________________________________________
consensus             TAGTTTATTCTGGTGTTAGTCCTGTAGCCATTGCTGTGCAATCTCCATATGTTGCTCAAG
 
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rJMFF009K04+          TGCAGCTACTGAGAGACAGGCTTGATGAAATCCCAGTGACCACAGGTGTTGAGGTTGCGA
rJMFF006K03+          TGCAGCTACTGAGAGACAGGCTTGATGAAATCCCAGTGACCACAGGTGTTGAGGTTGCGA
                      ____________________________________________________________
consensus             TGCAGCTACTGAGAGACAGGCTTGATGAAATCCCAGTGACCACAGGTGTTGAGGTTGCGA
 
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rJMFF009K04+          CTATTGACAGCTTTCAAGGCCGTGAAGCAGATGCAGTGATCATATCAATGGTTCGTTCAA
rJMFF006K03+          CTATTGACAGCTTTCAAGGCCGTGAAGCAGATGCAGTGATCATATCAATGGTTCGTTCAA
                      ____________________________________________________________
consensus             CTATTGACAGCTTTCAAGGCCGTGAAGCAGATGCAGTGATCATATCAATGGTTCGTTCAA
 
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rJMFF009K04+          ACAATATGGGAGCGGTGGGGTTCTTGGGTGACAGCCGAAGAATGAATGTTGCCATAACAA
rJMFF006K03+          ACAATATGGGAGCGGTGGGGTTCTTGGGTGACAGCCGAAGAATGAATGTTGCCATAACAA
                      ____________________________________________________________
consensus             ACAATATGGGAGCGGTGGGGTTCTTGGGTGACAGCCGAAGAATGAATGTTGCCATAACAA
 
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rJMFF009K04+          GAGCACGCAAGCATGTAGCAGTGGTGTGTGACAGCTCCACCATATGCCACAACACCTTTT
rJMFF006K03+          GAGCACGCAAGCATGTAGCAGTGGTGTGTGACAGCTCCACCATATGCCACAACACCTTTT
                      ____________________________________________________________
consensus             GAGCACGCAAGCATGTAGCAGTGGTGTGTGACAGCTCCACCATATGCCACAACACCTTTT
 
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rJMFF009K04+          TGGCGAGGTTGCTGCGCCATATTAGATATTTTGGTCATGTGAAGAACGCAGAACCTGGCA
rJMFF006K03+          TGGCGAGGTTGCTGCGCCATATTAGATATTTTGGTCATGTGAAGAACGCAGAACCTGGCA
                      ____________________________________________________________
consensus             TGGCGAGGTTGCTGCGCCATATTAGATATTTTGGTCATGTGAAGAACGCAGAACCTGGCA
 
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rJMFF009K04+          GTTTCGGAGGATTTGGCCTTGGCATGGATCCCATGTTGCCTACTGCAAATTAAGCTCGCA
rJMFF006K03+          GTTTCGGAGGATTTGGCCTTGGCATGGATCCCATGTTGCCTACTGC-AATTAAGCTCGCA
                      ____________________________________________________________
consensus             GTTTCGGAGGATTTGGCCTTGGCATGGATCCCATGTTGCCTACTGCAAATTAAGCTCGCA
 
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rJMFF009K04+          GGTGTTACAATCAAGTTTCTTTTATTCACACACTTGAACATGGAGGACAACTCTCAGTGA
rJMFF006K03+          GGTGTTACAATCAAGTTTCTTTTATTCACACACTTGAACATGGAGGACAACTCTCAGTGA
                      ____________________________________________________________
consensus             GGTGTTACAATCAAGTTTCTTTTATTCACACACTTGAACATGGAGGACAACTCTCAGTGA
 
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rJMFF009K04+          TTTTTTTCCAAAAGCAACACATACTCATTATTGTTTATTGTATATAATAACTCAAAGAAA
rJMFF006K03+          TTTTTTTCCAAAAGCAACACATACTCATTATTGTTTATTGTATATAATAACTCAAAGAAA
                      ____________________________________________________________
consensus             TTTTTTTCCAAAAGCAACACATACTCATTATTGTTTATTGTATATAATAACTCAAAGAAA
 
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rJMFF009K04+          TTCCACAACAGTGTAAATATTCTCTATTCCTTTTTAAGAAACAAAA              
rJMFF006K03+          TTCCACAACAGTGTAAATATTCTCTATTCCTTTTTAAGAAACAAAATGAAAAGCACAGGT
                      ____________________________________________________________
consensus             TTCCACAACAGTGTAAATATTCTCTATTCCTTTTTAAGAAACAAAATGAAAAGCACAGGT