| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF005C23 | Sequence | 487 | 001823 (4) | ref|XP_009782733.1| | 4e-52 | PREDICTED: glycerophosphodiester phosphodiesterase GDE1-like [Nicotiana sylvest | 708 | 005336 (3) | ref|XP_004492997.1| | 2e-73 | PREDICTED: glycerophosphodiester phosphodiesterase GDE1-like [Cicer arietinum] |
| JMFF007O06 | Sequence | 589 | 001823 (4) | ref|XP_009782733.1| | 2e-69 | PREDICTED: glycerophosphodiester phosphodiesterase GDE1-like [Nicotiana sylvest | 739 | 005336 (3) | ref|XP_006373136.1| | 2e-74 | hypothetical protein POPTR_0017s09050g [Populus trichocarpa] gb|ERP50933.1| hypo |
| JMFF021B07 | Sequence | 486 | 001823 (4) | ref|XP_009782733.1| | 9e-53 | PREDICTED: glycerophosphodiester phosphodiesterase GDE1-like [Nicotiana sylvest | 634 | 005336 (3) | ref|XP_009124822.1| | 1e-64 | PREDICTED: glycerophosphodiester phosphodiesterase GDE1 [Brassica rapa] |
This contig is upended
. : . : . : . : . : . :
rJMFF007O06+ CTCCAAGAAGCCTTCGAGGGAGTGAACTGT
____________________________________________________________
consensus CTCCAAGAAGCCTTCGAGGGAGTGAACTGT
. : . : . : . : . : . :
rJMFF007O06+ GTTCTGGGCTTCAACATTGAGCTCAAGTTCGACGATTACGTAGTTTACCAACAAGACCAC
____________________________________________________________
consensus GTTCTGGGCTTCAACATTGAGCTCAAGTTCGACGATTACGTAGTTTACCAACAAGACCAC
. : . : . : . : . : . :
rJMFF007O06+ CTCGTCCCGTGTTCTTCGCGACGTGTTGGAGGTTGTGATTGCTCATGCCAAGGATCGGCC
rJMFF005C23+ TCTTCGCGACGTGTTGGAGGTTGTGATTGCTCATGCCAAGGATCGGCC
____________________________________________________________
consensus CTCGTCCCGTGTTCTTCGCGACGTGTTGGAGGTTGTGATTGCTCATGCCAAGGATCGGCC
. : . : . : . : . : . :
rJMFF007O06+ TATCATCTTTTCGTCTTTCCACCCCGACGCGGCCCTGCTTGTCAAGAAACTTCAGAGTGT
rJMFF021B07+ TTTCGTCTTTCCACCCCGACGCGGCCCTGCTTGTCAAGAAACTTCAGAGTGT
rJMFF005C23+ TATCATCTTTTCGTCTTTCCACCCCGACGCGGCCCTGCTTGTCAAGAAACTTCAGAGTGT
____________________________________________________________
consensus TATCATCTTTTCGTCTTTCCACCCCGACGCGGCCCTGCTTGTCAAGAAACTTCAGAGTGT
. : . : . : . : . : . :
rJMFF007O06+ TTATCCAGTCTTTTTCCTCACCAACGGGGGCACCGAGGTGTACGATGATCCTAGGAGGAA
rJMFF021B07+ TTATCCAGTCTTTTTCCTCACCAACGGGGGCACCGAGGTGTACGATGATCCTAGGAGGAA
rJMFF005C23+ TTATCCAGTCTTTTTCCTCACCAACGGGGGCACCGAGGTGTACGATGATCCTAGGAGGAA
____________________________________________________________
consensus TTATCCAGTCTTTTTCCTCACCAACGGGGGCACCGAGGTGTACGATGATCCTAGGAGGAA
. : . : . : . : . : . :
rJMFF007O06+ CTCCTTGGAGGCGGCCATGAAAGTGTGTTTGGAAGGTGGCCTGGAAGGGATTGTTTCTGA
rJMFF021B07+ CTCCTTGGAGGCGGCCATGAAAGTGTGTTTGGAAGGTGGCCTGGAAGGGATTGTTTCTGA
rJMFF005C23+ CTCCTTGGAGGCGGCCATGAAAGTGTGTTTGGAAGGTGGCCTGGAAGGGATTGTTTCTGA
____________________________________________________________
consensus CTCCTTGGAGGCGGCCATGAAAGTGTGTTTGGAAGGTGGCCTGGAAGGGATTGTTTCTGA
. : . : . : . : . : . :
rJMFF007O06+ AGTAAAAGCCATATTTAGAAACCCGGCGGCGGTTAACAAGATCAAGGAGTCTGATCTCTC
rJMFF021B07+ AGTAAAAGCCATATTTAGAAACCCGGCGGCGGTTAACAAGATCAAGGAGTCTGATCTCTC
rJMFF005C23+ AGTAAAAGCCATATTTAGAAACCCGGCGGCGGTTAACAAGATCAAGGAGTCTGATCTCTC
____________________________________________________________
consensus AGTAAAAGCCATATTTAGAAACCCGGCGGCGGTTAACAAGATCAAGGAGTCTGATCTCTC
. : . : . : . : . : . :
rJMFF007O06+ ACTCCTCACATATGGCAAGCTCAACAATGTGGTGGAAGCGGTGTATATGCAGCACATGAT
rJMFF021B07+ ACTCCTCACATATGGCAAGCTCAACAATGTGGTGGAAGCGGTGTATATGCAGCACATGAT
rJMFF005C23+ ACTCCTCACATATGGCAAGCTCAACAATGTGGTGGAAGCGGTGTATATGCAGCACATGAT
____________________________________________________________
consensus ACTCCTCACATATGGCAAGCTCAACAATGTGGTGGAAGCGGTGTATATGCAGCACATGAT
. : . : . : . : . : . :
rJMFF007O06+ GGGCATTGATGGAGTGATTGTGGATTTTGTTGAGGAAATAGGAGGGGCTGTTTGGGAGAT
rJMFF021B07+ GGGCATTGATGGAGTGATTGTGGATTTTGTTGAGGAAATAGGAGGGGCTGTTTGGGAGAT
rJMFF005C23+ GGGCATTGATGGAGTGATTGTGGATTTTGTTGAGGAAATAGGAGGGGCTGTTTGGGAGAT
____________________________________________________________
consensus GGGCATTGATGGAGTGATTGTGGATTTTGTTGAGGAAATAGGAGGGGCTGTTTGGGAGAT
. : . : . : . : . : . :
rJMFF007O06+ GTTGAAGCCATCGAAGGAGGAGGAAGAAGAAGAATTAATGAAAGGGGAGGCAGTTCAGAA
rJMFF021B07+ GTTGAAGCCATCGAAGGAGGAGGAAGAAGAAGAATTAATGAAAGGGGAGGCAGTTCAAAA
rJMFF005C23+ GTTGAAGCCATCGAAGGAGGAGGAAGAAGAAGAATTAATGAAAGGGGAGGCAGTTCAAAA
____________________________________________________________
consensus GTTGAAGCCATCGAAGGAGGAGGAAGAAGAAGAATTAATGAAAGGGGAGGCAGTTCAAAA
. : . : . : . : . : . :
rJMFF007O06+ GCCCAAATTCTCACAGAGGGAGTTGACATTTTTGCTTAAACTCATACCTCAATTGATACA
rJMFF021B07+ GCCCAAATTCTCACAGAGGGAGTTGACATTTTTGCTTAAACTCATACCTCAATTGATACA
rJMFF005C23+ GCCCAAATTCTCACAGAGGGAGTTGACATTTTTGCTTAAACTCATACCTCAATTGATACA
____________________________________________________________
consensus GCCCAAATTCTCACAGAGGGAGTTGACATTTTTGCTTAAACTCATACCTCAATTGATACA
. : . : . : . : . : . :
rJMFF007O06+ ACAATAACATTATTAGCCGACGCCCAAAGGTTGTATATAAGATGTTTGATTTGAAGATGA
rJMFF021B07+ ACAATAACATTATTAGCCGACGCCCAAAGGTTGTATATAAGATGTTTGATTTGAAGATGA
rJMFF005C23+ ACAATAACATTATTAGCCGACGCCCAAAGGTTGTATATAAGATGTTTGATTTGAAGATGA
____________________________________________________________
consensus ACAATAACATTATTAGCCGACGCCCAAAGGTTGTATATAAGATGTTTGATTTGAAGATGA
. : . : . : . : . : . :
rJMFF007O06+ GTCATTCAGTACATGGAAGTATGTATGTATGTATTACCGGTTAGGGATT
rJMFF021B07+ GTCATTCAGTACATGGAAGTATGTATGTATGTATTACCGGTTAGGGATTAATTGAAGGGC
rJMFF005C23+ GTCATTCAGTACATGGAAGTATGTATGTATGTATTACCGGTTAGGGATTAATTGAAGGGC
____________________________________________________________
consensus GTCATTCAGTACATGGAAGTATGTATGTATGTATTACCGGTTAGGGATTAATTGAAGGGC
. : . : . : . : . : . :
rJMFF021B07+ ATTCTCATCTGTTTCTGCTCTATAATGGATGACGTTGTACTT
rJMFF005C23+ ATTCTCATCTGTTTCTGCTCTATAATGGATGACGTTGTACTTTATATACATGGTGAAACC
____________________________________________________________
consensus ATTCTCATCTGTTTCTGCTCTATAATGGATGACGTTGTACTTTATATACATGGTGAAACC