clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF002O23 | Sequence | 715 | 005330 (5) | ref|XP_004230535.1| | 3e-96 | PREDICTED: phosphatidylserine decarboxylase proenzyme 2 isoform X2 [Solanum lyc | |||||
JMFF005B15 | Sequence | 442 | 008728 (2) | 760 | 005330 (5) | ref|XP_004230535.1| | 5e-115 | PREDICTED: phosphatidylserine decarboxylase proenzyme 2 isoform X2 [Solanum lyc | |||
JMFF010I16 | Sequence | 586 | 008728 (2) | ref|XP_009787986.1| | 5e-27 | PREDICTED: phosphatidylserine decarboxylase proenzyme 2-like [Nicotiana sylvest | 775 | 005330 (5) | ref|XP_004230535.1| | 6e-110 | PREDICTED: phosphatidylserine decarboxylase proenzyme 2 isoform X2 [Solanum lyc |
JMFF037K20 | Sequence | 716 | 005330 (5) | ref|XP_004230535.1| | 3e-98 | PREDICTED: phosphatidylserine decarboxylase proenzyme 2 isoform X2 [Solanum lyc | |||||
JMSF003I20 | Sequence | 314 | 009894 (15) | ref|XP_006361530.1| | 8e-30 | PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like isoform X1 [S | 725 | 005330 (5) | ref|XP_004230535.1| | 2e-113 | PREDICTED: phosphatidylserine decarboxylase proenzyme 2 isoform X2 [Solanum lyc |
This contig is upended
. : . : . : . : . : . :
rJMFF010I16+ G
____________________________________________________________
consensus G
. : . : . : . : . : . :
rJMFF010I16+ GTGCAAGACCAATTGCCTGCCCCAGAACGCAATGATATCGCTGTCTGTGCAGNTGATAGC
____________________________________________________________
consensus GTGCAAGACCAATTGCCTGCCCCAGAACGCAATGATATCGCTGTCTGTGCAGNTGATAGC
. : . : . : . : . : . :
rJMFF010I16+ CCGCACTATGGCATTCAACAATGTTACTGATGCTGCAAGATTTTGGATTAAGGGCCGAAA
rJMFF005B15+ CCGCACTATGGCATTCAACAATGTTACTGATGCTGCAAGATTTTGGATTAAGGGCCGAAA
rJMSF003I20+ CCGCACTATGGCATTCAACAATGTTACTGATGCTGCAAGATTTTGGATTAAGGGCCGAAA
rJMFF037K20+ GAAA
____________________________________________________________
consensus CCGCACTATGGCATTCAACAATGTTACTGATGCTGCAAGATTTTGGATTAAGGGCCGAAA
. : . : . : . : . : . :
rJMFF010I16+ ATTTTCCATCCAAGGCCTTTTGGGGGATGAAGCATGCTCCAGTGCATTCGTTGATGGAAG
rJMFF005B15+ ATTTTCCATCCAAGGCCTTTTGGGGGATGAAGCATGCTCCAGTGCATTCGTTGATGGAAG
rJMSF003I20+ ATTTTCCATCCAAGGCCTTTTGGGGGATGAAGCATGCTCCAGTGCATTCGTTGATGGAAG
rJMFF037K20+ ATTTTCCATCCAAGNCCTTTTGGGGGATGAAGCATGCTCCAGTGCATTCGTTGATGGAAG
rJMFF002O23+ TCCATCCAAGCCNTTTTGGGGGATGAAGCATGCTCCAGTGCATTCGTTGATGGAAG
____________________________________________________________
consensus ATTTTCCATCCAAGGCCTTTTGGGGGATGAAGCATGCTCCAGTGCATTCGTTGATGGAAG
. : . : . : . : . : . :
rJMFF010I16+ TTTGGTGATATTTAGGCTGGCACCCCAGGATTACCATCGTTTCCATCTTCCTGTCTCTGG
rJMFF005B15+ TTTGGTGATATTTAGGCTGGCACCCCAGGATTACCATCGTTTCCATCTTCCTGTCTCTGG
rJMSF003I20+ TTTGGTGATATTTAGGCTGGCACCCCAGGATTACCATCGTTTCCATCTTCCTGTCTCTGG
rJMFF037K20+ TTTGGTGATATTTAGGCTGGCACCCCAGGATTACCATCGTTTCCATCTTCCTGTCTCTGG
rJMFF002O23+ TTTGGTGATATTTAGGCTGGCACCCCAGGATTACCATCGTTTCCATCTTCCTGTCTCTGG
____________________________________________________________
consensus TTTGGTGATATTTAGGCTGGCACCCCAGGATTACCATCGTTTCCATCTTCCTGTCTCTGG
. : . : . : . : . : . :
rJMFF010I16+ AACTATTGAGAAATTTATAGACATACCTGGATGTTTATATACTGTAAATCCTATTGCTGT
rJMFF005B15+ AACTATTGAGAAATTTATAGACATACCTGGATGTTTATATACTGTAAATCCTATTGCTGT
rJMSF003I20+ AACTATTGAGAAATTTATAGACATACCTGGATGTTTATATACTGTAAATCCTATTGCTGT
rJMFF037K20+ AACTATTGAGAAATTTATAGACATACCTGGATGTTTATATACTGTAAATCCTATTGCTGT
rJMFF002O23+ AACTATTGAGAAATTTATAGACATACCTGGATGTTTATATACTGTAAATCCTATTGCTGT
____________________________________________________________
consensus AACTATTGAGAAATTTATAGACATACCTGGATGTTTATATACTGTAAATCCTATTGCTGT
. : . : . : . : . : . :
rJMFF010I16+ GAATAGCAAGTATTGTAATGTCTTCACAGAGAATAAGAGGGCTGTGTCAATAATATCAAC
rJMFF005B15+ GAATAGCAAGTATTGTAATGTCTTCACAGAGAATAAGAGGGCTGTGTCAATAATATCAAC
rJMSF003I20+ GAATAGCAAGTATTGTAATGTCTTCACAGAGAATAAGAGGGCTGTGTCAATAATATCAAC
rJMFF037K20+ GAATAGCAAGTATTGTAATGTCTTCACAGAGAATAAGAGGGCTGTGTCAATAATATCAAC
rJMFF002O23+ GAATAGCAAGTATTGTAATGTCTTCACAGAGAATAAGAGGGCTGTGTCAATAATATCAAC
____________________________________________________________
consensus GAATAGCAAGTATTGTAATGTCTTCACAGAGAATAAGAGGGCTGTGTCAATAATATCAAC
. : . : . : . : . : . :
rJMFF010I16+ AGAAGACTTTGGAAAGGTGGCCTTTGTTGCAATTGGAGCAACAATGGTTGGCAGCATTAC
rJMFF005B15+ AGAAGACTTTGGAAAGGTGGCCTTTGTTGCAATTGGAGCAACAATGGTTGGCAGCATTAC
rJMSF003I20+ AGAAGACTTTGGAAAGGTGGCCTTTGTTGCAATTGGAGCAACAATGGTTGGCAGCATTAC
rJMFF037K20+ AGAAGACTTTGGAAAGGTGGCCTTTGTTGCAATTGGAGCAACAATGGTTGGCAGCATTAC
rJMFF002O23+ AGAAGACTTTGGAAAGGTGGCCTTTGTTGCAATTGGAGCAACAATGGTTGGCAGCATTAC
____________________________________________________________
consensus AGAAGACTTTGGAAAGGTGGCCTTTGTTGCAATTGGAGCAACAATGGTTGGCAGCATTAC
. : . : . : . : . : . :
rJMFF010I16+ TTTTTCGAAGAAGGAGCGTGACTATGTCAACAAGGGTGACGAGTTTGGGTATTTCTCTTT
rJMFF005B15+ TTTTTCGAAGAAGGAGCGTGACTATGTCAACAAGGGTGACGAGTTTGGGTATTTCTCTTT
rJMSF003I20+ TTTTTCGAAGAAGGAGCGTGACTATGTCAACAAGGGTGACGAGTTTGGGTATTTCTCTTT
rJMFF037K20+ TTTTTCGAAGAAGGAGCGTGACTATGTCAACAAGGGTGACGAGTTTGGGTATTTCTCTTT
rJMFF002O23+ TTTTTCGAAGAAGGAGCGTGACTATGTCAACAAGGGTGACGAGTTTGGGTATTTCTCTTT
____________________________________________________________
consensus TTTTTCGAAGAAGGAGCGTGACTATGTCAACAAGGGTGACGAGTTTGGGTATTTCTCTTT
. : . : . : . : . : . :
rJMFF010I16+ TGGTGGAAGTACAGTGATTTGCGTCTTCGAAAAGGACTCGATAAGGATAGATGAGGACCT
rJMFF005B15+ TGGTGGAAGTACAGTGATTTGCGTCTTCGAAAAGGACTCGATAAGGATAGATGAGGACCT
rJMSF003I20+ TGGTGGAAGTACAGTGATTTGCGTCTTCGAAAAGGACTCGATAAGGATAGATGAGGACCT
rJMFF037K20+ TGGTGGAAGTACAGTGATTTGCGTCTTCGAAAAGGACTCGATAAGGATAGATGAGGACCT
rJMFF002O23+ TGGTGGAAGTACAGTGATTTGCGTCTTCGAAAAGGACTCGATAAGGATAGATGAGGACCT
____________________________________________________________
consensus TGGTGGAAGTACAGTGATTTGCGTCTTCGAAAAGGACTCGATAAGGATAGATGAGGACCT
. : . : . : . : . : . :
rJMFF010I16+ CTTGGAAAATAGTGCACGATCTCTTGAGACATTAGTAACGGTGGGAATGCAGTTGGGGGT
rJMFF005B15+ CTTGGAAAATAGTGCACGATCTCTTGAGACATTAGTAACGGTGGGAATGCAGTTGGGGGT
rJMSF003I20+ CTTGGAAAATAGTGCACGATCTCTTGAGACATTAGTAACGGTGGGAATGCAGTTGGGGGT
rJMFF037K20+ CTTGGAAAATAGTGCACGATCTCTTGAGACATTAGTAACGGTGGGAATGCAGTTGGGGGT
rJMFF002O23+ CTTGGAAAATAGTGCACGATCTCTTGAGACATTAGTAACGGTGGGAATGCAGTTGGGGGT
____________________________________________________________
consensus CTTGGAAAATAGTGCACGATCTCTTGAGACATTAGTAACGGTGGGAATGCAGTTGGGGGT
. : . : . : . : . : . :
rJMFF010I16+ GTCCATAAAGAAACAGGCAGATGTTAAGTCGAAGTTGGAAAATCTTTCTTTATAAACATG
rJMFF005B15+ GTCCATAAAGAAACAGGCAGATGTTAAGTCGAAGTTGGAAAATCTTTCTTTATAAACATG
rJMSF003I20+ GTCCATAAAGAAACAGGCAGATGTGAAGTCGAAGTTGGAAAATCTTTCTTTATAAACATG
rJMFF037K20+ GTCCATAAAGAAACAGGCAGATGTGAAGTCGAAGTTGGAAAATCTTTCTTTATAAACATG
rJMFF002O23+ GTCCATAAAGAAACAGGCAGATGTGAAGTCGAAGTTGGAAAATCTTTCTTTATAAACATG
____________________________________________________________
consensus GTCCATAAAGAAACAGGCAGATGTGAAGTCGAAGTTGGAAAATCTTTCTTTATAAACATG
. : . : . : . : . : . :
rJMFF010I16+ ATCAGTTTGCTTTCCTTGCATGTTTATTTCATTTGGTCTTGTCCTAAATGTGTAGAAACA
rJMFF005B15+ ATCAGTTTGCTTTCCTTGCATGTTTATTTCATTTGGTCTTGTCCTAAATGTGTAGAAACA
rJMSF003I20+ ATCAGTTTGCTTTCCTTGCATGTTTATTTCATTTGGTCTTGTCCTAAATGTGTAGAAACA
rJMFF037K20+ ATCAGTTTGCTTTCCTTGCATGTTTATTTCATTTGGTCTTGTCCTAAATGTGTAGAAACA
rJMFF002O23+ ATCAGTTTGCTTTCCTTGCATGTTTATTTCATTTGGTCTTGTCCTAAATGTGTAGAAACA
____________________________________________________________
consensus ATCAGTTTGCTTTCCTTGCATGTTTATTTCATTTGGTCTTGTCCTAAATGTGTAGAAACA
. : . : . : . : . : . :
rJMFF010I16+ AAATAAATAA-CAGTGGGGGAGTTCATGTTCTTAGTTACATT
rJMFF005B15+ AAATAAATAA-CAGTGGGGGAGTTCATGTTCTTAGTTACATT
rJMSF003I20+ AAATAAATAACCAGTGGGGGAGTTCATGTTCTTAGTTACATTCAAGGAA
rJMFF037K20+ AAATAAATAA-CAGTGGGGGAGTTCATGTTCTTAGTTACATTCAAGGAATCCAGGTCAGT
rJMFF002O23+ AAATAAATAA-CAGTGGGGGAGTTCATGTTCTTAGTTACATTCAAGGAATCCAGGTCAGT
____________________________________________________________
consensus AAATAAATAA-CAGTGGGGGAGTTCATGTTCTTAGTTACATTCAAGGAATCCAGGTCAGT
. : . : . : . : . : . :
rJMFF037K20+ GTTTTTGATGTATCATAGGCTATGTTCTCATTAGTGGAGCTTTTGTGGGT
rJMFF002O23+ GTTTTTGATGTATCATAGGCTATGTTCTCATTAGTGGAGCTTTTGTGGGTGTTTTCTTTA
____________________________________________________________
consensus GTTTTTGATGTATCATAGGCTATGTTCTCATTAGTGGAGCTTTTGTGGGTGTTTTCTTTA