Contig 005323:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP002G10Sequence559005323 (3)ref|XP_009789110.1|1e-32PREDICTED: nuA4 complex subunit EAF3 homolog isoform X1 [Nicotiana sylvestris]
JMSF052P18Sequence665005323 (3)ref|XP_009789110.1|1e-38PREDICTED: nuA4 complex subunit EAF3 homolog isoform X1 [Nicotiana sylvestris]871005323 (3)ref|XP_009789111.1|2e-96PREDICTED: nuA4 complex subunit EAF3 homolog isoform X2 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF052P18-                       TATTAATAACAGCAAAAAAGGAGCCTGGGATTGAAGCCTTTTGAAGG
                      ____________________________________________________________
consensus                          TATTAATAACAGCAAAAAAGGAGCCTGGGATTGAAGCCTTTTGAAGG
 
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rJMSF052P18-          TGCAGAGTTTCAACTGTATAAAACGAGCATTACAAAATAACAGCACCTGCTGTTGCTATT
                      ____________________________________________________________
consensus             TGCAGAGTTTCAACTGTATAAAACGAGCATTACAAAATAACAGCACCTGCTGTTGCTATT
 
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rJMSF052P18-          CACCAGACAAAAGCAACATGTACAATGCAACCAACCAATTTCTTAGAACAAATGGGGTGG
                      ____________________________________________________________
consensus             CACCAGACAAAAGCAACATGTACAATGCAACCAACCAATTTCTTAGAACAAATGGGGTGG
 
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rJMSF052P18-          AGGGAGGGGGCTTGAGGGCAAGATGGAGGCACTTATACAGAGCATAAGTTTCACTACGTT
                      ____________________________________________________________
consensus             AGGGAGGGGGCTTGAGGGCAAGATGGAGGCACTTATACAGAGCATAAGTTTCACTACGTT
 
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rJMSF052P18-          TTGAGCTCAGTCATCTCCTTTCTTGTTGACAACATCTGAACCTTCTGGATCAATGTATGA
                      ____________________________________________________________
consensus             TTGAGCTCAGTCATCTCCTTTCTTGTTGACAACATCTGAACCTTCTGGATCAATGTATGA
 
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rJMSF052P18-          TGATAGGAAAAATGAGCTTTGATTCTTCTGTAGGAACCTGAGGAAGTCCTGCAATTTCTG
                      ____________________________________________________________
consensus             TGATAGGAAAAATGAGCTTTGATTCTTCTGTAGGAACCTGAGGAAGTCCTGCAATTTCTG
 
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rJMSF052P18-          TCGCAACTCAGTTACTGTCTCATCCTCAATATTTGCATGGTGCAATATTTCAGGAAATTT
                      ____________________________________________________________
consensus             TCGCAACTCAGTTACTGTCTCATCCTCAATATTTGCATGGTGCAATATTTCAGGAAATTT
 
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rJMSF052P18-          AACAAACAAACGTAATAGATGCTCAGCACCATACACAGATGAAGGAAAGACTCCATCTGT
                      ____________________________________________________________
consensus             AACAAACAAACGTAATAGATGCTCAGCACCATACACAGATGAAGGAAAGACTCCATCTGT
 
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rJMSF052P18-          AATTGCTTCTTGATATTGCTCGCGCTCATTCTTGTAAAGGAGCATAGCAGACAATGCTTT
                      ____________________________________________________________
consensus             AATTGCTTCTTGATATTGCTCGCGCTCATTCTTGTAAAGGAGCATAGCAGACAATGCTTT
 
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rJMSF052P18-          GTCAAAGTAACATTGCAATCCACTAAGAATTTCGCTTACTGAATCAGCAATTATTCCATC
                      ____________________________________________________________
consensus             GTCAAAGTAACATTGCAATCCACTAAGAATTTCGCTTACTGAATCAGCAATTATTCCATC
 
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rJMSF052P18-          CTTTTTTAGGCGATAGTCACTATACTTGCTTAGTATTTCATTTACACTCGGAGAACGAGG
                      ____________________________________________________________
consensus             CTTTTTTAGGCGATAGTCACTATACTTGCTTAGTATTTCATTTACACTCGGAGAACGAGG
 
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rJMSF052P18-          AAGTTGGACAAGCTTGCCCAAATGGGTAATAAATTCACAATCATCAACCAGCTGCTTCTT
JMSF052P18+                                                                 CTTCTT
                      ____________________________________________________________
consensus             AAGTTGGACAAGCTTGCCCAAATGGGTAATAAATTCACAATCATCAACCAGCTGCTTCTT
 
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rJMSF052P18-          TAATGAGGATGGAATTTGAATGTTAAAACCAAGCTTCTCTGAAGGTAGGACACCTTTGTC
JMCP002G10+                                                           GACACCTTTGTC
JMSF052P18+           TAATGAGGATGGAATTTGAATGTTAAAACCAAGCTTCTCTGAAGGTAGGACACCTTTGTC
                      ____________________________________________________________
consensus             TAATGAGGATGGAATTTGAATGTTAAAACCAAGCTTCTCTGAAGGTAGGACACCTTTGTC
 
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rJMSF052P18-          CTTTTGAACATCTTTCTTTTGCCTTTTAGCTCTTGTCCCAGTAGAACATTTTGCTTTTAA
JMCP002G10+           CTTTTGAACATCTTTCTTTTGCCTTTTAGCTCTTGTCCCAGTAGAACATTTTGCTTTTAA
JMSF052P18+           CTTTTGAACATCTTTCTTTTGCCTTTTAGCTCTTGTCCCAGTAGAACATTTTGCTTTTAA
                      ____________________________________________________________
consensus             CTTTTGAACATCTTTCTTTTGCCTTTTAGCTCTTGTCCCAGTAGAACATTTTGCTTTTAA
 
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rJMSF052P18-          TTGTGATCCACGCCTGGNCCTTTTCGTTCTTCTTCATGTCATAT                
JMCP002G10+           TTGTGATCCACGCCTGG-CCTTTTCGTTCTTCTTCATGTCATATTTATTATTAAGCTCCT
JMSF052P18+           TTGTGATCCACGCCTGG-CCTTTTCGTTCTTCTTCATGTCATATTTATTATTAAGCTCCT
                      ____________________________________________________________
consensus             TTGTGATCCACGCCTGG-CCTTTTCGTTCTTCTTCATGTCATATTTATTATTAAGCTCCT
 
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JMCP002G10+           GCTGTTTTCGTAAGTTCTCCTCAGTGACTTTCATCAATCGATCTATGCCCAACCATTCAT
JMSF052P18+           GCTGTTTTCGTAAGTTCTCTTCAGTGACTTTCATCAATCGATCTATGCCCAACCATTCAT
                      ____________________________________________________________
consensus             GCTGTTTTCGTAAGTTCTCTTCAGTGACTTTCATCAATCGATCTATGCCCAACCATTCAT
 
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JMCP002G10+           CCCAGTTTTTGTTCCAACCGGTATAGTGAACAAAATACTCCCATTCTGCCTTCACAAATC
JMSF052P18+           CCCAGTTTTTGTTCCAACCGGTATAGTGAACAAAATACTCCCATTCTGCCTTCACAAATC
                      ____________________________________________________________
consensus             CCCAGTTTTTGTTCCAACCGGTATAGTGAACAAAATACTCCCATTCTGCCTTCACAAATC
 
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JMCP002G10+           GAGTCTTTTGAAagaTAGCTTTGTACACACATTGGTTGTGATAAGCAAGGACTTCTTCTC
JMSF052P18+           GAGTCTTTTGAATCTTAGCTTTGTACACACATTGGTTGTGATAAGCAAGGACTTCTTCTC
                      ____________________________________________________________
consensus             GAGTCTTTTGAATCTTAGCTTTGTACACACATTGGTTGTGATAAGCAAGGACTTCTTCTC
 
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JMCP002G10+           CTagaTCGAAGGGGCCGGAGAGGGATGACGAATGTGGAGGCGGCGATGACGATGGCGAGT
JMSF052P18+           CTTCTTCGAAGGGGCCGGAGAGGGATGACGAATGTGGAGGCGGCGATGACGATGGCGAGT
                      ____________________________________________________________
consensus             CTTCTTCGAAGGGGCCGGAGAGGGATGACGAATGTGGAGGCGGCGATGACGATGGCGAGT
 
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JMCP002G10+           CAGTAACAGTGcacGCGCCGTCATCGTCCGAAACGGTGTCGGAATCGTCCGTAACCATCG
JMSF052P18+           CAGTAACAGTGGTGGCGCCGTCATCGTCCGAAACGGTGTCGGAATCGTCCGTAACCATCG
                      ____________________________________________________________
consensus             CAGTAACAGTGGTGGCGCCGTCATCGTCCGAAACGGTGTCGGAATCGTCCGTAACCATCG
 
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JMCP002G10+           CCTTTAAGTTCCCCATTTTACGAGCTTCTCcaacAATTTTTGTTTATGGAAAAAAAGAAA
JMSF052P18+           CCTTTAAGTTCCCCATTTTACGAGCTTCTCGTTGAATTTTTGTTTATGGAAAAAAAGAAA
                      ____________________________________________________________
consensus             CCTTTAAGTTCCCCATTTTACGAGCTTCTCGTTGAATTTTTGTTTATGGAAAAAAAGAAA
 
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JMCP002G10+           TTAAAGAGTCTCAAAAAGGTTCTTCTGGAACAATCGGTAAAGGATCAAAGCACTTCGCTC
JMSF052P18+           TTAAAGAGTCTCAAAAAGGTTCTTCTGGAACAATCGGTAAAGGATCAAAGCACTTCGCTC
                      ____________________________________________________________
consensus             TTAAAGAGTCTCAAAAAGGTTCTTCTGGAACAATCGGTAAAGGATCAAAGCACTTCGCTC
 
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JMCP002G10+           TCCTGAAC                                                    
JMSF052P18+           TCCTGAACTTATCAATTGAGAGAAACGGCGGATACTAGTGGTGGCGTACGGCCACTAGCC
                      ____________________________________________________________
consensus             TCCTGAACTTATCAATTGAGAGAAACGGCGGATACTAGTGGTGGCGTACGGCCACTAGCC