Contig 005318:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF019N17-                                                         ATGTATGTATCTA
rJMSF052C14-                              GAAGGAAGAATTGAGTTTAAAAATGAAATGTATGTATCTA
                      ____________________________________________________________
consensus                                 GAAGGAAGAATTGAGTTTAAAAATGAAATGTATGTATCTA
 
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rJMSF019N17-          CCCCATAATCCCATTTACATCCCCACCCAAATATTGTCTTTGTACAAAAATGCTTTGAGT
rJMSF052C14-          CCCCATAATCCCATTTACATCCCCACCCAAATATTGTCTTTGTACAAAAATGCTTTGAGT
                      ____________________________________________________________
consensus             CCCCATAATCCCATTTACATCCCCACCCAAATATTGTCTTTGTACAAAAATGCTTTGAGT
 
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rJMSF019N17-          TCTTCACAGCAACCTTTGTCGCTTTTCGAGATGGGTATAACTGCTAGCCATGTTTGAGCC
rJMSF052C14-          TCTTCACAGCAACCTTTGTCGCTTTTCGAGATGGGTATAACTGCTAGCCATGTTTGAGCC
                      ____________________________________________________________
consensus             TCTTCACAGCAACCTTTGTCGCTTTTCGAGATGGGTATAACTGCTAGCCATGTTTGAGCC
 
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rJMSF019N17-          ACCAGACATCAACCTCTGGCTGCCAAGACAGGATCCAAAGTTCAACATAGGCATTGACAA
rJMSF052C14-          ACCAGACATCAACCTCTGGCTGCCAAGACAGGATCCAAAGTTCAACATAGGCATTGACAA
                      ____________________________________________________________
consensus             ACCAGACATCAACCTCTGGCTGCCAAGACAGGATCCAAAGTTCAACATAGGCATTGACAA
 
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rJMSF019N17-          CATTTGTGGAGACGGGCCAGGAATCTCGAAGCAAAGCTGTGAAAGTGTTCTTGATGAAGC
rJMSF052C14-          CATTTGTGGAGACGGGCCAGGAATCTCGAAGCAAAGCTGTGAAAGTGTTCTTGATGAAGC
                      ____________________________________________________________
consensus             CATTTGTGGAGACGGGCCAGGAATCTCGAAGCAAAGCTGTGAAAGTGTTCTTGATGAAGC
 
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rJMSF019N17-          CGCAACAGCAGGGCTGTGATGAGCAAAAATCTCAGCATCATTGCAGCCCCTGATGGAAAC
rJMSF052C14-          CGCAACAGCAGGGCTGTGATGAGCAAAAATCTCAGCATCATTGCAGCCCCTGATGGAAAC
                      ____________________________________________________________
consensus             CGCAACAGCAGGGCTGTGATGAGCAAAAATCTCAGCATCATTGCAGCCCCTGATGGAAAC
 
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rJMSF019N17-          CGGTGGGATATGGAAGGCCTTCAGCTGAGGCGGGTTGCGCCACCTGGGGAGCGGCCCCGC
rJMSF052C14-          CGGTGGGATATGGAAGGCCTTCAGCTGAGGCGGGTTGCGCCACCTGGGGAGCGGCCCCGC
                      ____________________________________________________________
consensus             CGGTGGGATATGGAAGGCCTTCAGCTGAGGCGGGTTGCGCCACCTGGGGAGCGGCCCCGC
 
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rJMSF019N17-          CACGAGCAGCGTCTGCAGAAGCGGCCCCGCCTCGAGCACGGCCTGCAGAAGCTTCCCCTT
rJMSF052C14-          CACGAGCAGCGTCTGCAGAAGCGGCCCCGCCTCGAGCACGGCCTGCAGAAGCTTCCCCTT
                      ____________________________________________________________
consensus             CACGAGCAGCGTCTGCAGAAGCGGCCCCGCCTCGAGCACGGCCTGCAGAAGCTTCCCCTT
 
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rJMSF019N17-          CTGAGGCAAACATTTCCCCTTCGCGAGACCCTCAATCGCCATCCCTGCCAGATCCACCGG
rJMSF052C14-          CTGAGGCAAACATTTCCCCTTCGCGAGACCCTCAATCGCCATCCCTGCCAGATCCACCGG
JMSF052C14+                                CGCGAGACCCTCAATCGCCATCCCTGCCAGATCCACCGG
                      ____________________________________________________________
consensus             CTGAGGCAAACATTTCCCCTTCGCGAGACCCTCAATCGCCATCCCTGCCAGATCCACCGG
 
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rJMSF019N17-          GGCAGAAACCAGGCTGTTCTGAACCATGGCACTAGAATCAACTGCACTGCTATTCAAGAG
rJMSF052C14-          GGCAGAAACCAGGCTGTTCTGAACCATGGCACTAGAATCAACTGCACTGCTATTCAAGAG
JMSF052C14+           GGCAGAAACCAGGCTGTTCTGAACCATGGCACTAGAATCAACTGCACTGCTATTCAAGAG
                      ____________________________________________________________
consensus             GGCAGAAACCAGGCTGTTCTGAACCATGGCACTAGAATCAACTGCACTGCTATTCAAGAG
 
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rJMSF019N17-          CTCGGGGGATGAAACTGCCTCGAGAAAGGACTCGACGGGGGATGAGCCCTGAGTGTTGTA
rJMSF052C14-          CTCGGGGGATGAAACTGCCTCGAGAAAGGACTCGACGGGGGATGAGCCCTGAGTGTTGTA
JMSF052C14+           CTCGGGGGATGAAACTGCCTCGAGAAAGGACTCGACGGGGGATGAGCCCTGAGTGTTGTA
                      ____________________________________________________________
consensus             CTCGGGGGATGAAACTGCCTCGAGAAAGGACTCGACGGGGGATGAGCCCTGAGTGTTGTA
 
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rJMSF019N17-          GGTCTCGGACAGGCTGTTCGATTCAGTAACACCCGAATTCGCCTTCGTTGCAGGCAACAG
rJMSF052C14-          GGTCTCGGACAGGCTGTTCGATTCAGTAACACCCGAATTCGCCTTCGTTGCAGGCAACAG
JMSF019N17+             TCTCGGACAGGCTGTTCGATTCAGTAACACCCGAATTCGCCTTCGTTGCAGGCAACAG
JMSF052C14+           GGTCTCGGACAGGCTGTTCGATTCAGTAACACCCGAATTCGCCTTCGTTGCAGGCAACAG
                      ____________________________________________________________
consensus             GGTCTCGGACAGGCTGTTCGATTCAGTAACACCCGAATTCGCCTTCGTTGCAGGCAACAG
 
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rJMSF019N17-          AACAACACTTCCTGTTCCCAGCAGCTTCTGAAGCTGATCTCTTGCTGCATCTCTCTCCTT
rJMSF052C14-          AACAACACTTCCTGTTCCCAGCAGCTTCTGAAGCTGATCTCTTGCTGCATCTCTCTCCTT
JMSF019N17+           AACAACACTTCCTGTTCCCAGCAGCTTCTGAAGCTGATCTCTTGCTGCATCTCTCTCCTT
JMSF052C14+           AACAACACTTCCTGTTCCCAGCAGCTTCTGAAGCTGATCTCTTGCTGCATCTCTCTCCTT
                      ____________________________________________________________
consensus             AACAACACTTCCTGTTCCCAGCAGCTTCTGAAGCTGATCTCTTGCTGCATCTCTCTCCTT
 
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rJMSF019N17-          ACAAGCAACCTTCAGA                                            
rJMSF052C14-          ACAAGCAACCTTCAGAAGCTGAACCAGTTGCTTCACATATTCTTTGCTCTTCCTCGTCTC
JMSF019N17+           ACAAGCAACCTTCAGAAGCTGAACCAGTTGCTTCACATATTCTTTGCTCTTCCTCGTCTC
JMSF052C14+           ACAAGCAACCTTCAGAAGCTGAACCAGTTGCTTCACATATTCTTTGCTCTTCCTCGTCTC
                      ____________________________________________________________
consensus             ACAAGCAACCTTCAGAAGCTGAACCAGTTGCTTCACATATTCTTTGCTCTTCCTCGTCTC
 
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rJMSF052C14-          CTCACTCGATTCCGCCTTAAACCTTTCCAGTTCAAACGTACTATACAAAA          
JMSF019N17+           CTCACTCGATTCCGCCTTAAACCTTTCCAGTTCAAACGTACTATACAAAA          
JMSF052C14+           CTCACTCGATTCCGCCTTAAACCTTTCCAGTTCAAACGTACTATACAAAAGCTTCTGCTT
                      ____________________________________________________________
consensus             CTCACTCGATTCCGCCTTAAACCTTTCCAGTTCAAACGTACTATACAAAAGCTTCTGCTT
 
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JMSF052C14+           CAGTTCATCCATTGTCTGCAAATTCATCACAATTTCAACAACTGAACAATCTTTTACAGA
                      ____________________________________________________________
consensus             CAGTTCATCCATTGTCTGCAAATTCATCACAATTTCAACAACTGAACAATCTTTTACAGA
 
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JMSF052C14+           AAAACAAACAAAACTGCAAAACATTCAAAAAAGCAAACTCAATTAACGTAGATTCTGCTT
                      ____________________________________________________________
consensus             AAAACAAACAAAACTGCAAAACATTCAAAAAAGCAAACTCAATTAACGTAGATTCTGCTT
 
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JMSF052C14+           CAGTTCATCCATTGTCTGTAAATTCATCAGAATTCAAGAACTGGCCAATCTTTTACAGAA
                      ____________________________________________________________
consensus             CAGTTCATCCATTGTCTGTAAATTCATCAGAATTCAAGAACTGGCCAATCTTTTACAGAA
 
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JMSF052C14+           AACAAACAAACATGAAACATTAAAAAAAAGAAAACTCAACCAATACAGTACATGCAATTC
                      ____________________________________________________________
consensus             AACAAACAAACATGAAACATTAAAAAAAAGAAAACTCAACCAATACAGTACATGCAATTC