Contig 005309:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS028D03Sequence649005309 (7)ref|XP_011041943.1|9e-93PREDICTED: probable methionine--tRNA ligase [Populus euphratica] ref|XP_01104194
JMFS110C07Sequence627005309 (7)ref|XP_004242831.1|3e-131PREDICTED: probable methionine--tRNA ligase [Solanum lycopersicum]
JMSF007K20Sequence350005309 (7)ref|XP_009779530.1|2e-20PREDICTED: probable methionine--tRNA ligase [Nicotiana sylvestris]743005838 (5)ref|XP_009797160.1|6e-93PREDICTED: probable methionine--tRNA ligase [Nicotiana sylvestris]
JMSF026B18Sequence638005309 (7)ref|XP_004166160.1|3e-91PREDICTED: probable methionine--tRNA ligase-like, partial [Cucumis sativus]709005838 (5)ref|XP_006361630.1|2e-95PREDICTED: probable methionine--tRNA ligase-like [Solanum tuberosum]
JMSF045N21Sequence741005309 (7)ref|XP_009779530.1|4e-91PREDICTED: probable methionine--tRNA ligase [Nicotiana sylvestris]711005838 (5)ref|XP_006361630.1|1e-93PREDICTED: probable methionine--tRNA ligase-like [Solanum tuberosum]
JMSF048I16Sequence682005309 (7)ref|XP_011041943.1|5e-102PREDICTED: probable methionine--tRNA ligase [Populus euphratica] ref|XP_01104194799005838 (5)ref|XP_006361630.1|4e-114PREDICTED: probable methionine--tRNA ligase-like [Solanum tuberosum]
JMSF050H23Sequence677005309 (7)ref|XP_004166160.1|1e-89PREDICTED: probable methionine--tRNA ligase-like, partial [Cucumis sativus]728005838 (5)ref|XP_006361630.1|9e-96PREDICTED: probable methionine--tRNA ligase-like [Solanum tuberosum]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS110C07+ GAAAATTACAGTATGAAAAGGCACATTGTCCTTGCCCAT
                      ____________________________________________________________
consensus GAAAATTACAGTATGAAAAGGCACATTGTCCTTGCCCAT
 
. : . : . : . : . : . :
JMFS110C07+ AAATTGATACAGCTCCACATTTTCAGGATTCTTCCACCATTTCTCCCAATCAGCTGTGTA
                      ____________________________________________________________
consensus AAATTGATACAGCTCCACATTTTCAGGATTCTTCCACCATTTCTCCCAATCAGCTGTGTA
 
. : . : . : . : . : . :
JMFS110C07+ GCATGAAGTGATGGATACATAACCAATAGGTGCATCAAACCATACATAGAAAACCTTGTC
                      ____________________________________________________________
consensus GCATGAAGTGATGGATACATAACCAATAGGTGCATCAAACCATACATAGAAAACCTTGTC
 
. : . : . : . : . : . :
JMFS110C07+ CTTGTATTTCTCGTGTGGAACTGGAACCCCCCATTTCAAATCTCTAGTGATACACCTTGA
                      ____________________________________________________________
consensus CTTGTATTTCTCGTGTGGAACTGGAACCCCCCATTTCAAATCTCTAGTGATACACCTTGA
 
. : . : . : . : . : . :
JMFS110C07+ CTTCAGCCCTTCTCTAAGCCATGCATGAGTTGTGTGAATAGCATTCTGACTCCATCCTCC
                      ____________________________________________________________
consensus CTTCAGCCCTTCTCTAAGCCATGCATGAGTTGTGTGAATAGCATTCTGACTCCATCCTCC
 
. : . : . : . : . : . :
JMFS110C07+ AGCCACTGACATACTGTTTACATAGCTCTCTAATTTATCCTTCAGCAAAGGGAGCTCAAG
                      ____________________________________________________________
consensus AGCCACTGACATACTGTTTACATAGCTCTCTAATTTATCCTTCAGCAAAGGGAGCTCAAG
 
. : . : . : . : . : . :
JMFS110C07+ GAACAAATGGTCTGTATCTTTAATGCATGGGGTGTTACGACAGACCTTGCATCTTGGCTC
                      ____________________________________________________________
consensus GAACAAATGGTCTGTATCTTTAATGCATGGGGTGTTACGACAGACCTTGCATCTTGGCTC
 
. : . : . : . : . : . :
JMFS110C07+ CTTTAGTTCTGTAGGATTTAAAAGCTTCCCGCACTTTTCACATTGATCTCCTCGTGCAGA
JMSF045N21+ GTTCTGTAGGATTTAAAAGCTTCCCGCACTTTTCACATTGATCTCCTCGTGCAGA
JMSF048I16+ TCGTGCAGA
                      ____________________________________________________________
consensus CTTTAGTTCTGTAGGATTTAAAAGCTTCCCGCACTTTTCACATTGATCTCCTCGTGCAGA
 
. : . : . : . : . : . :
JMFS110C07+ ATCATAGTTACAACCCGGTGTTGGACAGGTACCCTCTACAAGGCGGTCAGCTAAAAACTT
JMSF045N21+ ATCATAGTTACAACCCGGTGTTGGACAGGTACCCTCTACAAGGCGGTCAGCTAA-AACTT
JMFS028D03+ GACAGGTACCCTCTACAAGGCGGTCAGCTAANAACTT
JMSF048I16+ ATCATAGTTACAACCCGGTGTTGGACAGGTACCCTCTACAAGGCGGTCAGCTAAAAACTT
JMSF026B18+ CTACAAGGCGGTCAGCTAAAAACTT
JMSF050H23+ GGCGGTCAGCTAAAAACTT
                      ____________________________________________________________
consensus ATCATAGTTACAACCCGGTGTTGGACAGGTACCCTCTACAAGGCGGTCAGCTAAAAACTT
 
. : . : . : . : . : . :
JMFS110C07+ TTTGCATGTATCACAGTAAGGCTGCTGCATTGTATTCTCAGTAAGCCAGTTGTTATCCAA
JMSF045N21+ TTTGCATGTATCACAGTAAGGCTGCTGCATTGTATTCTCAGTAAGCCAGTTGTTATCCAA
JMFS028D03+ TNTGCATGTATCACAGTAAGGCTGCTGCATTGTATTCTCAGTAAGCCAGTTGTTATCCAA
JMSF048I16+ TTTGCATGTATCACAGTAAGGCTGCTGCATTGTATTCTCAGTAAGCCAGTTGTTATCCAA
JMSF026B18+ TTTGCATGTATCACAGTAAGGCTGCTGCATTGTATTCTCAGTAAGCCAGTTGTTATCCAA
JMSF050H23+ TTTGCATGTATCACAGTAAGGCTGCTGCATTGTATTCTCAGTAAGCCAGTTGTTATCCAA
                      ____________________________________________________________
consensus TTTGCATGTATCACAGTAAGGCTGCTGCATTGTATTCTCAGTAAGCCAGTTGTTATCCAA
 
. : . : . : . : . : . :
JMFS110C07+ TAGTTTCTTGAAAATGGACTGGCAAACCTCAGTTTGTTGAGGAGTGGA
JMSF045N21+ TAGTTTCTTGAAAATGGACTGGCAAACCTCAGTTTGTTGAGGAGTGGATGTCCGTCCAAA
JMFS028D03+ TAGTTTCTTGAAAATGGACTGGCAAACCTCAGTTTGTTGAGGAGTGGATGTCCGTCCAAA
JMSF048I16+ TAGTTTCTTGAAAATGGACTGGCAAACCTCAGTTTGTTGAGGAGTGGATGTCCGTCCAAA
JMSF026B18+ TAGTTTCTTGAAAATGGACTGGCAAACCTCAGTTTGTTGAGGAGTGGATGTCCGTCCAAA
JMSF050H23+ TAGTTTCTTGAAAATGGACTGGCAAACCTCAGTTTGTTGAGGAGTGGATGTCCGTCCAAA
                      ____________________________________________________________
consensus TAGTTTCTTGAAAATGGACTGGCAAACCTCAGTTTGTTGAGGAGTGGATGTCCGTCCAAA
 
. : . : . : . : . : . :
JMSF045N21+ CTTATCAAAACTTATGTCAAACCATTGATAGACTTGTTTATGGATTTCATGATATTTGTC
JMFS028D03+ CTTATCAAAACTTATGTCAAACCATTGATAGACTTGTTTATGGATTTCATGATATTTGTC
JMSF048I16+ CTTATCAAAACTTATGTCAAACCATTGATAGACTTGTTTATGGATTTCATGATATTTGTC
JMSF026B18+ CTTATCAAAACTTATGTCAAACCATTGATAGACTTGTTTATGGATTTCATGATATTTGTC
JMSF050H23+ CTTATCAAAACTTATGTCAAACCATTGATAGACTTGTTTATGGATTTCATGATATTTGTC
                      ____________________________________________________________
consensus CTTATCAAAACTTATGTCAAACCATTGATAGACTTGTTTATGGATTTCATGATATTTGTC
 
. : . : . : . : . : . :
JMSF045N21+ GCATATTTGCTGAGGACTAGAATTCTCCTCCAAGGCTTTCGTCTCAGTGGCTGTCCCGTA
JMFS028D03+ GCATATTTGCTGAGGACTAGAATTCTCCTCCAAGGCTTTCGTCTCAGTGGCTGTCCCGTA
JMSF048I16+ GCATATTTGCTGAGGACTAGAATTCTCCTCCAAGGCTTTCGTCTCAGTGGCTGTCCCGTA
JMSF026B18+ GCATATTTGCTGAGGACTAGAATTCTCCTCCAAGGCTTTCGTCTCAGTGGCTGTCCCGTA
JMSF050H23+ GCATATTTGCTGAGGACTAGAATTCTCCTCCAAGGCTTTCGTCTCAGTGGCTGTCCCGTA
                      ____________________________________________________________
consensus GCATATTTGCTGAGGACTAGAATTCTCCTCCAAGGCTTTCGTCTCAGTGGCTGTCCCGTA
 
. : . : . : . : . : . :
JMSF045N21+ CTCATCCGTTCCGCATATGTATATGGCATTGTAGCCTCTGAGCCTACAATACCGAGCAAA
JMFS028D03+ CTCATCCGTTCCGCATATGTATATGGCATTGTAGCCTCTGAGCCTACAATACCGAGCAAA
JMSF048I16+ CTCATCCGTTCCGCATATGTATATGGCATTGTAGCCTCTGAGCCTACAATACCGAGCAAA
JMSF007K20+ ACCGAGCAAA
JMSF026B18+ CTCATCCGTTCCGCATATGTATATGGCATTGTAGCCTCTGAGCCTACAATACCGAGCAAA
JMSF050H23+ CTCATCCGTTCCGCATATGTATATGGCATTGTAGCCTCTGAGCCTACAATACCGAGCAAA
                      ____________________________________________________________
consensus CTCATCCGTTCCGCATATGTATATGGCATTGTAGCCTCTGAGCCTACAATACCGAGCAAA
 
. : . : . : . : . : . :
JMSF045N21+ CACATCGGCACTCAACACACAGCCGATGATATTGCCGAGATGAGGGACGTTGTTGACGTA
JMFS028D03+ CACATCGGCACTCAACACACAGCCGATGATATTGCCGAGATGAGGGACGTTGTTGACGTA
JMSF048I16+ CACATCGGCACTCAACACACAGCCGATGATATTGCCGAGATGAGGGACGTTGTTGACGTA
JMSF007K20+ CACATCGGCACTCAACACACAGCCGATGATATTGCCGAGATGAGGGACGTTGTTGACGTA
JMSF026B18+ CACATCGGCACTCAACACACAGCCGATGATATTGCCGAGATGAGGGACGTTGTTGACGTA
JMSF050H23+ CACATCGGCACTCAACACACAGCCGATGATATTGCCGAGATGAGGGACGTTGTTGACGTA
                      ____________________________________________________________
consensus CACATCGGCACTCAACACACAGCCGATGATATTGCCGAGATGAGGGACGTTGTTGACGTA
 
. : . : . : . : . : . :
JMSF045N21+ AGGCAGCGCACTAGTGATTAGGATATTTCTTTTGCCTGGGATTGGCACTTTCGGAGCTTT
JMFS028D03+ AGGCAGCGCACTAGTGATTAGGATATTTCTTTTGCCTGGGATTGGCACTTTCGGAGCTTT
JMSF048I16+ AGGCAGCGCACTAGTGATTAGGATATTTCTTTTGCCTGGGATTGGCACTTTCGGAGCTTT
JMSF007K20+ AGGCAGCGCACTAGTGATTAGGATATTTCTTTTGCCTGGGATTGGCACTTTCGGAACTTT
JMSF026B18+ AGGCAGCGCACTAGTGATTAGGATATTTCTTTTGCCTGGGATTGGCACTTTCGGAGCTTT
JMSF050H23+ AGGCAGCGCACTAGTGATTAGGATATTTCTTTTGCCTGGGATTGGCACTTTCGGAGCTTT
                      ____________________________________________________________
consensus AGGCAGCGCACTAGTGATTAGGATATTTCTTTTGCCTGGGATTGGCACTTTCGGAGCTTT
 
. : . : . : . : . : . :
JMSF045N21+ CTCACTAATTTCACCCATCTGAAAGAGCTTATTAGCAGTTCGGGGAGTTTTACAGCGGTG
JMFS028D03+ CTCACTAATTTCACCCATCTGAAAGAGCTTATTAGCAGTTCGGGGAGTTTTACAGCGGTG
JMSF048I16+ CTCACTAATTTCACCCATCTGAAAGAGCTTATTAGCAGTTCGGGGAGTTTTACAGCGGTG
JMSF007K20+ CTCGCTAACTTCACCCATCTGAAAGAGCTTATTAGCAGTTCGGGGAGTTTTACAGCGGTG
JMSF026B18+ CTCACTAATTTCACCCATCTGAAAGAGCTTATTAGCAGTTCGGGGAGTTTTACAGCGGTG
JMSF050H23+ CTCACTAATTTCACCCATCTGAAAGAGCTTATTAGCAGTTCGGGGAGTTTTACAGCGGTG
                      ____________________________________________________________
consensus CTCACTAATTTCACCCATCTGAAAGAGCTTATTAGCAGTTCGGGGAGTTTTACAGCGGTG
 
. : . : . : . : . : . :
JMSF045N21+ GCGCAAACGTATGACAGAGGAGAAAACTGATAATCAGACTGGTAACGGTAGGCTGGCC--
JMFS028D03+ GCGCAAACGTATGACAGAGGAGAAAACTGATAATCAGACTGGTAACGGTAGGCTGGCC--
JMSF048I16+ GCGCAAACGTATGACAGAGGAGAAAACTGATAATCAGACTGGTAACGGTAGGCTGGCC--
JMSF007K20+ GCGCAAACGTATGACAGAGGAGAAAACTGATAATCAGACTGGTAACGGTGGTTGGCCTGG
JMSF026B18+ GCGCAAACGTATGACAGAGGAGAAAACTGATAATCAGACTGGTAACGGTAGGCTGGCC--
JMSF050H23+ GCGCAAACGTATGACAGAGGAGAAAACTGATAATCAGACTGGTAACGGTAGGCTGGCC--
                      ____________________________________________________________
consensus GCGCAAACGTATGACAGAGGAGAAAACTGATAATCAGACTGGTAACGGTAGGCTGGCC--
 
. : . : . : . : . : . :
JMSF045N21+ TGGCGGCGGCGGAGGAGGAGGAAAGTATATAAATTAGAAGGGTTGAGATTACTGCGCCTG
JMFS028D03+ TGGCGGCGGCGGAGGAGGAGGAAAGTATATAAATTAGAAGGGTT-AGATTACTGCGCCTG
JMSF048I16+ TGGCGGCGGCGGAGGAGGAGGAAAGTATATAAATTAGAAGGGTTGAGATTACTGCGCCTG
JMSF007K20+ CGGCGGCGGCGGTGGAGGAGGAAAGTATATATATTAGAAGTGTTGAGATTACTGCGCCTG
JMSF026B18+ TGGCGGCGGCGGAGGAGGAGGAAAGTATATAAATTAGAAGGGTTGAGATTACTGCGCCTG
JMSF050H23+ TGGCGGCGGCGGAGGAGGAGGAAAGTATATAAATTAGAAGGGTTGAGATTACTGCGCCTG
                      ____________________________________________________________
consensus TGGCGGCGGCGGAGGAGGAGGAAAGTATATAAATTAGAAGGGTTGAGATTACTGCGCCTG
 
. : . : . : . : . : . :
JMSF045N21+ AGA
JMFS028D03+ AGACCTGAGTCCTG
JMSF048I16+ AGACCTGAGTCCTG
JMSF007K20+ AGA
JMSF026B18+ AGACCTGAGTCCTG
JMSF050H23+ AGACCTGAGTCCTGAGATAGAATGAGTTGAGGACTTGAGGTAACTAATCAGAGATTCTGC
                      ____________________________________________________________
consensus AGACCTGAGTCCTGAGATAGAATGAGTTGAGGACTTGAGGTAACTAATCAGAGATTCTGC