| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF002J10 | Sequence | 543 | 005299 (7) | ref|XP_009783913.1| | 2e-25 | PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer homolog 2-like [Nicotian | |||||
| JMFF037A21 | Sequence | 509 | 005299 (7) | ref|XP_009783913.1| | 1e-16 | PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer homolog 2-like [Nicotian | 743 | 008667 (5) | gb|KJB61696.1| | 8e-53 | hypothetical protein B456_009G374900 [Gossypium raimondii] |
| JMFS008A05 | Sequence | 607 | 005299 (7) | ref|XP_009783913.1| | 8e-49 | PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer homolog 2-like [Nicotian | |||||
| JMFS078C04 | Sequence | 627 | 005299 (7) | ref|XP_009783913.1| | 2e-34 | PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer homolog 2-like [Nicotian | |||||
| JMFS160E02 | Sequence | 434 | 005299 (7) | gb|AFD22619.1| | 1e-12 | dicer-like 2 protein [Nicotiana attenuata] | |||||
| JMSF022H20 | Sequence | 653 | 005299 (7) | ref|XP_009783913.1| | 2e-32 | PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer homolog 2-like [Nicotian | 788 | 008667 (5) | ref|XP_002514810.1| | 7e-60 | ATP binding protein, putative [Ricinus communis] gb|EEF47364.1| ATP binding prot |
| JMSF049B02 | Sequence | 679 | 005299 (7) | ref|XP_009783913.1| | 2e-32 | PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer homolog 2-like [Nicotian | 719 | 008667 (5) | gb|KJB61693.1| | 2e-39 | hypothetical protein B456_009G374900 [Gossypium raimondii] |
This contig is upended
. : . : . : . : . : . :
JMFS160E02+ ACCAA
JMFS008A05+ GATTGCCATTATGAGGCGTCGATACCAA
____________________________________________________________
consensus GATTGCCATTATGAGGCGTCGATACCAA
. : . : . : . : . : . :
JMFS160E02+ AGAGCTTTCCAACAGGCAACTGAAAAGCAAACCGTTCTTTGTGTGCATTGGCCTGCAACC
JMFS008A05+ AGAGCTTTCCAACAGGCAACTGAAAAGCAAACCGTTCTTTGTGTGCATTGGCCTGCAACC
____________________________________________________________
consensus AGAGCTTTCCAACAGGCAACTGAAAAGCAAACCGTTCTTTGTGTGCATTGGCCTGCAACC
. : . : . : . : . : . :
JMFS160E02+ ATGTCTAGAACTACAAGAATCTGAATGCCTATGTTCCGGTTTTTGGTACGAAAATAACAC
JMFS008A05+ ATGTCTAGAACTACAAGAATCTGAATGCCTATGTTCCGGTTTTTGGTACGAAAATAACAC
____________________________________________________________
consensus ATGTCTAGAACTACAAGAATCTGAATGCCTATGTTCCGGTTTTTGGTACGAAAATAACAC
. : . : . : . : . : . :
JMFS160E02+ CGAGGAAATAATGTTCCAATCGATCTTTGGAACATCACTCGGGTCCATCGATGATGGGAG
JMFS008A05+ CGAGGAAATAATGTTCCAATCGATCTTTGGAACATCACTCGGGTCCATCGATGATGGGAG
JMFS078C04+ ATGTTCCAATCGATCTTTGGAACATCACTCGGGTCCATCGATGATGGGAG
JMSF022H20+ TCGGGTCCATCGATGATGGGAG
JMSF049B02+ GGAACATCACTCGGGTCCATCGATGATGGGAG
____________________________________________________________
consensus CGAGGAAATAATGTTCCAATCGATCTTTGGAACATCACTCGGGTCCATCGATGATGGGAG
. : . : . : . : . : . :
JMFS160E02+ AAGGAGATAATCAATAACTGCAGAACCATCAACCAGATTTAATCTGCCCAATGCTTCGTC
JMFS008A05+ AAGGAGATAATCAATAACTGCAGAACCATCAACCAGATTTAATCTGCCCAATGCTTCGTC
JMFF002J10+ TAATCTGCCCAATGCTTCGTC
JMFS078C04+ AAGGAGATAATCAATAACTGCAGAACCATCAACCAGATTTAATCTGCCCAATGCTTCGTC
JMSF022H20+ AAGGAGATAATCAATAACTGCAGAACCATCAACCAGATTTAATCTGCCCAATGCTTCGTC
JMSF049B02+ AAGGAGATAATCAATAACTGCAGAACCATCAACCAGATTTAATCTGCCCAATGCTTCGTC
____________________________________________________________
consensus AAGGAGATAATCAATAACTGCAGAACCATCAACCAGATTTAATCTGCCCAATGCTTCGTC
. : . : . : . : . : . :
JMFS160E02+ GAGTGT-CCCAGATTATGCTCGAATAAAACTCTAAGAACAGTTACTTGAAACCTCCGACA
JMFS008A05+ GAGTGTATTCAGATTATGCTCGAATAAAACTCTAAGAACAGTTACTTGAAACCTCCGACA
JMFF002J10+ GAGTGTATTCAGATTATGCTCGAATAAAACTCTAAGAACAGTTACTTGAAACCTCCGACA
JMFS078C04+ GAGTGTATTCAGATTATGCTCGAATAAAACTCTAAGAACAGTTACTTGAAACCTCCGACA
JMSF022H20+ GAGTGTATTCAGATTATGCTCGAATAAAACTCTAAGAACAGTTACTTGAAACCTCCGACA
JMSF049B02+ GAGTGTATTCAGATTATGCTCGAATAAAACTCTAAGAACAGTTACTTGAAACCTCCGACA
____________________________________________________________
consensus GAGTGTATTCAGATTATGCTCGAATAAAACTCTAAGAACAGTTACTTGAAACCTCCGACA
. : . : . : . : . : . :
JMFS160E02+ CCTAAGTAT
JMFS008A05+ CCTAAGTATTTGTTCGTTAGATAGTCCAACATCCCCAATGTACACTGTCTGGCCTACCCA
JMFF002J10+ CCTAAGTATTTGTTCGTTAGATAGTCCAACATCCCCAATGTACACTGTCTGGCCTACCCA
JMFS078C04+ CCTAAGTATTTGTTCGTTAGATAGTCCAACATCCCCAATGTACACTGTCTGGCCTACCCA
JMSF022H20+ CCTAAGTATTTGTTCGTTAGATAGTCCAACATCCCCAATGTACACTGTCTGGCCTACCCA
JMFF037A21+ CTAAGTATTTGTTCGTTAGATAGTCCAACATCCCCAATGTACACTGTCTGGCCTACCCA
JMSF049B02+ CCTAAGTATTTGTTCGTTAGATAGTCCAACATCCCCAATGTACACTGTCTGGCCTACCCA
____________________________________________________________
consensus CCTAAGTATTTGTTCGTTAGATAGTCCAACATCCCCAATGTACACTGTCTGGCCTACCCA
. : . : . : . : . : . :
JMFS008A05+ GTTGCCTCCCTCAATGTTCAACTCAAAAGACAAATTCTCGTCATCAGATTCAAGCCTTGT
JMFF002J10+ GTTGCCTCCCTCAATGTTCAACTCAAAAGACAAATTCTCGTCATCAGATTCAAGCCTTGT
JMFS078C04+ GTTGCCTCCCTCAATGTTCAACTCAAAAGACAAATTCTCGTCATCAGATTCAAGCCTTGT
JMSF022H20+ GTTGCCTCCCTCAATGTTCAACTCAAAAGACAAATTCTCGTCATCAGATTCAAGCCTTGT
JMFF037A21+ GTTGCCTCCCTCAATGTTCAACTCAAAAGACAAATTCTCGTCATCAGATTCAAGCCTTGT
JMSF049B02+ GTTGCCTCCCTCAATGTTCAACTCAAAAGACAAATTCTCGTCATCAGATTCAAGCCTTGT
____________________________________________________________
consensus GTTGCCTCCCTCAATGTTCAACTCAAAAGACAAATTCTCGTCATCAGATTCAAGCCTTGT
. : . : . : . : . : . :
JMFS008A05+ CCTCAAAGCAAGGATTATGTTTTGAAGCTGAGTTCTCTTATAATAGTACCGGTTAAGCTC
JMFF002J10+ CCTCAAAGCAAGGATTATGTTTTGAAGCTGAGTTCTCTTATAATAGTACCGGTTAAGCTC
JMFS078C04+ CCTCAAAGCAAGGATTATGTTTTGAAGCTGAGTTCTCTTATAATAGTACCGGTTAAGCTC
JMSF022H20+ CCTCAAAGCAAGGATTATGTTTTGAAGCTGAGTTCTCTTATAATAGTACCGGTTAAGCTC
JMFF037A21+ CCTCAAAGCAAGGATTATGTTTTGAAGCTGAGTTCTCTTATAATAGTACCGGTTAAGCTC
JMSF049B02+ CCTCAAAGCAAGGATTATGTTTTGAAGCTGAGTTCTCTTATAATAGTACCGGTTAAGCTC
____________________________________________________________
consensus CCTCAAAGCAAGGATTATGTTTTGAAGCTGAGTTCTCTTATAATAGTACCGGTTAAGCTC
. : . : . : . : . : . :
JMFS008A05+ AATGAGGTAGCAAGAGTATAATGTTTGAGGAGCATTGTCTCTAGTACCAACAAGTTCAGG
JMFF002J10+ AATGAGGTAGCAAGAGTATAATGTTTGAGGAGCATTGTCTCTAGTACCAACAAGTCCAGG
JMFS078C04+ AATGAGGTAGCAAGAGTATAATGTTTGAGGAGCATTGTCTCTAGTACCAACAAGTTCAGG
JMSF022H20+ AATGAGGTAGCAAGAGTATAATGTTTGAGGAGCATTGTCTCTAGTACCAACAAGTTCAGG
JMFF037A21+ AATGAGGTAGCAAGAGTATAATGTTTGAGGAGCATTGTCTCTAGTACCAACAAGTTCAGG
JMSF049B02+ AATGAGGTAGCAAGAGTATAATGTTTGAGGAGCATTGTCTCTAGTACCAACAAGTTCAGG
____________________________________________________________
consensus AATGAGGTAGCAAGAGTATAATGTTTGAGGAGCATTGTCTCTAGTACCAACAAGTTCAGG
. : . : . : . : . : . :
JMFS008A05+ TGGGAAGTACTTTGGTTGACATCCTAATT
JMFF002J10+ TGGGAAGTACTTTGGTTGACATCCTAATTCTTGATATGGAGGAGGATCTGATTGGAGCCC
JMFS078C04+ TGGGAAGTACTTTGGTTGACATCCTAATTCTTGATATGGAGGAGGATCTGATTGGAGCCC
JMSF022H20+ TGGGAAGTACTTTGGTTGACATCCTAATTCTTGATATGGAGGAGGATCTGATTGGAGCCC
JMFF037A21+ TGGGAAGTACTTTGGTTGACATCCTAATTCTTGATATGGAGGAGGATCTGATTGGAGCCC
JMSF049B02+ TGGGAAGTACTTTGGTTGACATCCTAATTCTTGATATGGAGGAGGATCTGATTGGAGCCC
____________________________________________________________
consensus TGGGAAGTACTTTGGTTGACATCCTAATTCTTGATATGGAGGAGGATCTGATTGGAGCCC
. : . : . : . : . : . :
JMFF002J10+ TGTTGATCCAGTGGTGGCCATATCAAATCTCTGCATCCAGACATCCAGTACTATATCTTT
JMFS078C04+ TGTTGATCCAGTGGTGGCCATATCAAATCTCTGCATCCAGACATCCAGTACTATATCTTT
JMSF022H20+ TGTTGATCCAGTGGTGGCCATATCAAATCTCTGCATCCAGACATCCAGTACTATATCTTT
JMFF037A21+ TGTTGATCCAGTGGTGGCCATATCAAATCTCTGCATCCAGACATCCAGTACTATATCTTT
JMSF049B02+ TGTTGATCCAGTGGTGGCCATATCAAATCTCTGCATCCAGACATCCAGTACTATATCTTT
____________________________________________________________
consensus TGTTGATCCAGTGGTGGCCATATCAAATCTCTGCATCCAGACATCCAGTACTATATCTTT
. : . : . : . : . : . :
JMFF002J10+ CACTCTTTGGTGGATAGATCAAATTAAAGTTGGATTCTTGTTTCTTGATCAGTTATATGC
JMFS078C04+ CAC---------------TCAAATTAAAGTTGGATTCTTGTTTCTTGATCAGTTATATGC
JMSF022H20+ CAC---------------TCAAATTAAAGTTGGATTCTTGTTTCTTGATCAGTTATATGC
JMFF037A21+ CAC---------------TCAAATTAAAGTTGGATTCTTGTTTCTTGATCAGTTATATGC
JMSF049B02+ CAC---------------TCAAATTAAAGTTGGATTCTTGTTTCTTGATCAGTTATATGC
____________________________________________________________
consensus CAC---------------TCAAATTAAAGTTGGATTCTTGTTTCTTGATCAGTTATATGC
. : . : . : . : . : . :
JMFF002J10+ TTTTGTAGAGGTTTAAGATTTTCATTGTAAAGCTTACAGACT
JMFS078C04+ TTTTGTAGAGGTTTAAGATTTTCATTGTAAAGCTTACAGACTAAGGAAAATC
JMSF022H20+ TTTTGTAGAGGTTTAAGATTTTCATTGTAAAGCTTACAGACTAAGGAAAATCCTGATTCC
JMFF037A21+ TTTTGTAGAGGTTTAAGATTTTCATTGTAAAGCTTACAGACTAAGGAAAATCCTGATTCC
JMSF049B02+ TTTTGTAGAGGTTTAAGATTTTCATTGTAAAGCTTACAGACTAAGGAAAATCCTGATTCC
____________________________________________________________
consensus TTTTGTAGAGGTTTAAGATTTTCATTGTAAAGCTTACAGACTAAGGAAAATCCTGATTCC
. : . : . : . : . : . :
JMSF022H20+ AAGCTTTTCTTGTACACTTATAAGCTACTCCGTACTATATTAGTC
JMFF037A21+ AAGCTTTTCTTGTACACTTATAAGCTACTCCGTACTATATTAGTC
JMSF049B02+ AAGCTTTTCTTGTACACTTATAAGCTACTCCGTACTATATTAGTCAGCTGTACAAATTTC
____________________________________________________________
consensus AAGCTTTTCTTGTACACTTATAAGCTACTCCGTACTATATTAGTCAGCTGTACAAATTTC