Contig 005286:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS033E04Sequence620005286 (9)emb|CDP19763.1|9e-41unnamed protein product [Coffea canephora]
JMFS059A01Sequence624005286 (9)ref|NP_001233765.1|1e-59auxin response factor 2 [Solanum lycopersicum] ref|XP_010318416.1| PREDICTED: au
JMFS095E09Sequence627005286 (9)ref|NP_001233765.1|6e-69auxin response factor 2 [Solanum lycopersicum] ref|XP_010318416.1| PREDICTED: au
JMFS100D12Sequence606005286 (9)ref|NP_001233765.1|2e-67auxin response factor 2 [Solanum lycopersicum] ref|XP_010318416.1| PREDICTED: au
JMFS110A03Sequence397005286 (9)emb|CDP19763.1|3e-20unnamed protein product [Coffea canephora]
JMFS155A06Sequence626005286 (9)ref|NP_001233765.1|2e-64auxin response factor 2 [Solanum lycopersicum] ref|XP_010318416.1| PREDICTED: au
JMSF022F17Sequence677005286 (9)ref|NP_001233765.1|9e-71auxin response factor 2 [Solanum lycopersicum] ref|XP_010318416.1| PREDICTED: au785011420 (3)ref|XP_009625132.1|9e-76PREDICTED: auxin response factor 2-like isoform X2 [Nicotiana tomentosiformis]
JMSF032P19Sequence677005286 (9)ref|NP_001233765.1|9e-80auxin response factor 2 [Solanum lycopersicum] ref|XP_010318416.1| PREDICTED: au767011420 (3)ref|XP_006346635.1|1e-65PREDICTED: auxin response factor 2-like [Solanum tuberosum]
JMSF046O23Sequence715005286 (9)ref|NP_001233765.1|6e-80auxin response factor 2 [Solanum lycopersicum] ref|XP_010318416.1| PREDICTED: au670011420 (3)ref|XP_006346635.1|7e-22PREDICTED: auxin response factor 2-like [Solanum tuberosum]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS155A06+ TTTA
JMSF022F17+ AGGCTGTAAGTGTTTTA
JMFS095E09+ GTGTTTTA
JMSF032P19+ AAGCACAGAAAACCCACCATGTGTGCTGGTGTCTGAGGCTGTAAGTGTTTTA
JMFS100D12+ AGGCTGTAAGTGTTTTA
JMSF046O23+ TTTAAGCACAGAAAACCCACCATGTGTGCTGGTGTCTGAGGCTGTAAGTGTTTTA
                      ____________________________________________________________
consensus TTTAAGCACAGAAAACCCACCATGTGTGCTGGTGTCTGAGGCTGTAAGTGTTTTA
 
. : . : . : . : . : . :
JMFS059A01+ CTGTGGAGGGAGCATGGATTCCCTCGTCACAGCA
JMFS155A06+ CAAAAGGAATGTACATGAAACCGTGGCTGTGGAGGGAGCATGGATTCCCTCGTCACAGCA
JMSF022F17+ CAAAAGGAATGTACATGAAACCGTGGCTGTGGAGGGAGCATGGATTCCCTCGTCACAGCA
JMFS095E09+ CAAAAGGAATGTACATGAAACCGTGGCTGTGGAGGGAGCATGGATTCCCTCGTCACAGCA
JMSF032P19+ CAAAAGGAATGTACATGAAACCGTGGCTGTGGAGGGAGCATGGATTCCCTCGTCACAGCA
JMFS100D12+ CAAAAGGAATGTACATGAAACCGTGGCTGTGGAGGGAGCATGGATTCCCTCGTCACAGCA
JMSF046O23+ CAAAAGGAATGTACATGAAACCGTGGCTGTGGAGGGAGCATGGATTCCCTCGTCACAGCA
                      ____________________________________________________________
consensus CAAAAGGAATGTACATGAAACCGTGGCTGTGGAGGGAGCATGGATTCCCTCGTCACAGCA
 
. : . : . : . : . : . :
JMFS059A01+ TTCTCATCTTGATTTGACTCAGGCATCAAAGTCACTTGGGCATATACCTCATCTGTATCT
JMFS155A06+ TTCTCATCTTGATTTGACTCAGGCATCAAAGTCACTTGGGCATATACCTCATCTGTATCT
JMSF022F17+ TTCTCATCTTGATTTGACTCAGGCATCAAAGTCACTTGGGCATATACCTCATCTGTATCT
JMFS095E09+ TTCTCATCTTGATTTGACTCAGGCATCAAAGTCACTTGGGCATATACCTCATCTGTATCT
JMSF032P19+ TTCTCATCTTGATTTGACTCAGGCATCAAAGTCACTTGGGCATATACCTCATCTGTATCT
JMFS100D12+ TTCTCATCTTGATTTGACTCAGGCATCAAAGTCACTTGGGCATATACCTCATCTGTATCT
JMSF046O23+ TTCTCATCTTGATTTGACTCAGGCATCAAAGTCACTTGGGCATATACCTCATCTGTATCT
                      ____________________________________________________________
consensus TTCTCATCTTGATTTGACTCAGGCATCAAAGTCACTTGGGCATATACCTCATCTGTATCT
 
. : . : . : . : . : . :
JMFS059A01+ GGTTCAGCCTTCAAAAGGACGTTGAAAACGCGGCATAGTATCTTCGGAGGAAGACCATAC
JMFS155A06+ GGTTCAGCCTTCAAAAGGACGTTGAAAACGCGGCATAGTATCTTCGGAGGAAGACCATAC
JMSF022F17+ GGTTCAGCCTTCAAAAGGACGTTGAAAACGCGGCATAGTATCTTCGGAGGAAGACCATAC
JMFS095E09+ GGTTCAGCCTTCAAAAGGACGTTGAAAACGCGGCATAGTATCTTCGGAGGAAGACCATAC
JMFS033E04+ C
JMSF032P19+ GGTTCAGCCTTCAAAAGGACGTTGAAAACGCGGCATAGTATCTTCGGAGGAAGACCATAC
JMFS100D12+ GGTTCAGCCTTCAAAAGGACGTTGAAAACGCGGCATAGTATCTTCGGAGGAAGACCATAC
JMSF046O23+ GGTTCAGCCTTCAAAAGGACGTTGAAAACGCGGCATAGTATCTTCGGAGGAAGACCATAC
                      ____________________________________________________________
consensus GGTTCAGCCTTCAAAAGGACGTTGAAAACGCGGCATAGTATCTTCGGAGGAAGACCATAC
 
. : . : . : . : . : . :
JMFS059A01+ ACTGGCATTTGCTGGTCAGCCACTTGATTAGTCGATGCTTCAACCTGCTCTATATGGCCT
JMFS110A03+ TGCTTCAACCTGCTCTATATGGCCT
JMFS155A06+ ACTGGCATTTGCTGGTCAGCCACTTGATTAGTCGATGCTTCAACCTGCTCTATATGGCCT
JMSF022F17+ ACTGGCATTTGCTGGTCAGCCACTTGATTAGTCGATGCTTCAACCTGCTCTATATGGCCT
JMFS095E09+ ACTGGCATTTGCTGGTCAGCCACTTGATTAGTCGATGCTTCAACCTGCTCTATATGGCCT
JMFS033E04+ ACTGGCATTTGCTGGTCAGCCACTTGATTAGTCGATGCTTCAACCTGCTCTATATGGCCT
JMSF032P19+ ACTGGCATTTGCTGGTCAGCCACTTGATTAGTCGATGCTTCAACCTGCTCTATATGGCCT
JMFS100D12+ ACTGGCATTTGCTGGTCAGCCACTTGATTAGTCGATGCTTCAACCTGCTCTATATGGCCT
JMSF046O23+ ACTGGCATTTGCTGGTCAGCCACTTGATTAGTCGATGCTTCAACCTGCTCTATATGGCCT
                      ____________________________________________________________
consensus ACTGGCATTTGCTGGTCAGCCACTTGATTAGTCGATGCTTCAACCTGCTCTATATGGCCT
 
. : . : . : . : . : . :
JMFS059A01+ TGAGGAAAATAAAACACCAGGTCCTGTTCACGTGGCACTGTCACCAGCGGCCCAGCACAA
JMFS110A03+ TGAGGAAAATAAAACACCAGGTCCTGTTCACGTGGCACTGTCACCAGCGGCCCAGCACAA
JMFS155A06+ TGAGGAAAATAAAACACCAGGTCCTGTTCACGTGGCACTGTCACCAGCGGCCCAGCACAA
JMSF022F17+ TGAGGAAAATAAAACACCAGGTCCTGTTCACGTGGCACTGTCACCAGCGGCCCAGCACAA
JMFS095E09+ TGAGGAAAATAAAACACCAGGTCCTGTTCACGTGGCACTGTCACCAGCGGCCCAGCACAA
JMFS033E04+ TGAGGAAAATAAAACACCAGGTCCTGTTCACGTGGCACTGTCACCAGCGGCCCAGCACAA
JMSF032P19+ TGAGGAAAATAAAACACCAGGTCCTGTTCACGTGGCACTGTCACCAGCGGCCCAGCACAA
JMFS100D12+ TGAGGAAAATAAAACACCAGGTCCTGTTCACGTGGCACTGTCACCAGCGGCCCAGCACAA
JMSF046O23+ TGAGGAAAATAAAACACCAGGTCCTGTTCACGTGGCACTGTCACCAGCGGCCCAGCACAA
                      ____________________________________________________________
consensus TGAGGAAAATAAAACACCAGGTCCTGTTCACGTGGCACTGTCACCAGCGGCCCAGCACAA
 
. : . : . : . : . : . :
JMFS059A01+ GCCCGCCATAACTCCATGTACAACGCTGCCTCAGCGTCACAATTACCGTTTCCGGCGCCG
JMFS110A03+ GCCCGCCATAACTCCATGTACAACGCTGCCTCAGCGTC------ACCGTTTCCGGCGCCG
JMFS155A06+ GCCCGCCATAACTCCATGTACAACGCTGCCTCAGCGTC------ACCGTTTCCGGCGCCG
JMSF022F17+ GCCCGCCATAACTCCATGTACAACGCTGCCTCAGCGTCACAATTACCGTTTCCGGCGCCG
JMFS095E09+ GCCCGCCATAACTCCATGTACAACGCTGCCTCAGCGTCACAATTACCGTTTCCGGCGCCG
JMFS033E04+ GCCCGCCATAACTCCATGTACAACGCTGCCTCAGCGTCACAATTACCGTTTCCGGCGCCG
JMSF032P19+ GCCCGCCATAACTCCATGTACAACGCTGCCTCAGCGTCACAATTACCGTTTCCGGCGCCG
JMFS100D12+ GCCCGCCATAACTCCATGTACAACGCTGCCTCAGCGTC------ACCGTTTCCGGCGCCG
JMSF046O23+ GCCCGCCATAACTCCATGTACAACGCTGCCTCAGCGTCACAATTACCGTTTCCGGCGCCG
                      ____________________________________________________________
consensus GCCCGCCATAACTCCATGTACAACGCTGCCTCAGCGTCACAATTACCGTTTCCGGCGCCG
 
. : . : . : . : . : . :
JMFS059A01+ GCGGCACTCCGAACTCCACTACAAGCGCCGGCACGCGGTCCATCACTCGTCTCCGCGTAA
JMFS110A03+ GCGGCACTCCGAACTCCACTACAAGCGCCGGCACGCGGTCCATCACTCGTCTCCGCGTAA
JMFS155A06+ GCGGCACTCCGAACTCCACTACAAGCGCCGGCACGCGGTCCATCACTCGTCTCCGCGTAA
JMSF022F17+ GCGGCACTCCGAACTCCACTACAAGCGCCGGCACGCGGTCCATCACTCGTCTCCGCGTAA
JMFS095E09+ GCGGCACTCCGAACTCCACTACAAGCGCCGGCACGCGGTCCATCACTCGTCTCCGCGTAA
JMFS033E04+ GCGGCACTCCGAACTCCACTACAAGCGCCGGCACGCGGTCCATCACTCGTCTCCGCGTAA
JMSF032P19+ GCGGCACTCCGAACTCCACTACAAGCGCCGGCACGCGGTCCATCACTCGTCTCCGCGTAA
JMFS100D12+ GCGGCACTCCGAACTCCACTACAAGCGCCGGCACGCGGTCCATCACTCGTCTCCGCGTAA
JMSF046O23+ GCGGCACTCCGAACTCCACTACAAGCGCCGGCACGCGGTCCATCACTCGTCTCCGCGTAA
                      ____________________________________________________________
consensus GCGGCACTCCGAACTCCACTACAAGCGCCGGCACGCGGTCCATCACTCGTCTCCGCGTAA
 
. : . : . : . : . : . :
JMFS059A01+ CCTCTGATCGAAACCTCCGAACTCACCATTTCCGTACGCTCACGAAAACTACAGATCTCT
JMFS110A03+ CCTCTGATCGAAACCTCCGAACTCACCATTTCCGTACGCTCACGAAAACTACAGATCTCT
JMFS155A06+ CCTCTGATCGAAACCTCCGAACTCACCATTTCCGTACGCTCACGAAAACTACAGATCTCT
JMSF022F17+ CCTCTGATCGAAACCTCCGAACTCACCATTTCCGTACGCTCACGAAAACTACAGATCTCT
JMFS095E09+ CCTCTGATCGAAACCTCCGAACTCACCATTTCCGTACGCTCACGAAAACTACAGATCTCT
JMFS033E04+ CCTCTGATCGAAACCTCCGAACTCACCATTTCCGTACGCTCACGAAAACTACAGATCTCT
JMSF032P19+ CCTCTGATCGAAACCTCCGAACTCACCATTTCCGTACGCTCACGAAAACTACAGATCTCT
JMFS100D12+ CCTCTGATCGAAACCTCCGAACTCACCATTTCCGTACGCTCACGAAAACTACAGATCTCT
JMSF046O23+ CCTCTGATCGAAACCTCCGAACTCACCATTCCCGTACGCTCACGAAAACTACAGATCTCT
                      ____________________________________________________________
consensus CCTCTGATCGAAACCTCCGAACTCACCATTTCCGTACGCTCACGAAAACTACAGATCTCT
 
. : . : . : . : . : . :
JMFS059A01+ CATCTCCCGAACGCCCTCCTCCGGCGACAGAATCACGTCAATCCACCGAGAATTATCCAG
JMFS110A03+ CATCTCCCGAACGCCCTCCTCCGGCGACAGAATCACGTCAATCCACCGAGAATTATCCAG
JMFS155A06+ CATCTCCCGAACGCCCTCCTCCGGCGACAGAATCACGTCAATCCACCGAGAATTATCCAG
JMSF022F17+ CATCTCCCGAACGCCCTCCTCCGGCGACAGAATCACGTCAATCCACCGAGAATTATCCAG
JMFS095E09+ CATCTCCCGAACGCCCTCCTCCGGCGACAGAATCACGTCAATCCACCGAGAATTATCCAG
JMFS033E04+ CATCTCCCGAACGCCCTCCTCCGGCGACAGAATCACGTCAATCCACCGAGAATTATCCAG
JMSF032P19+ CATCTCCCGAACGCCCTCCTCCGGCGACAGAATCACGTCAATCCACCGAGAATTATCCAG
JMFS100D12+ CATCTCCCGAACGCCCTCCTCCGGCGACAGAATCACGTCAATCCACCGAGAATTATCCAG
JMSF046O23+ CATCTCCCGAACGCCCTCCTCCGGCGACAGAATCACGTCAATCCACCGAGAATTATCCAG
                      ____________________________________________________________
consensus CATCTCCCGAACGCCCTCCTCCGGCGACAGAATCACGTCAATCCACCGAGAATTATCCAG
 
. : . : . : . : . : . :
JMFS059A01+ ATTCAACAACTTTCTCGCTCTTATTTCTCCCTCTACACAAGCTGCTGCTGCTGTGTCTGT
JMFS110A03+ ATTCAACAACTTTCTCGCTCTTATTTCTCTCTCTACACAAGCTGCTGCTGCTGTGTCTGT
JMFS155A06+ ATTCAACAACTTTCTCGCTCTTATTTCTCTCTCTACACAAGCTGCTGCTGCTGTGTCTGT
JMSF022F17+ ATTCAACAACTTTCTCGCTCTTATTTCTCTCTCTACACAAGCTGCTGCTGCTGTGTCTGT
JMFS095E09+ ATTCAACAACTTTCTCGCTCTTATTTCTCTCTCTACACAAGCTGCTGCTGCTGTGTCTGT
JMFS033E04+ ATTCAACAACTTTCTCGCTCTTATTTCTCTCTCTACACAAGCTGCTGCTGC
JMSF032P19+ ATTCAACAACTTTCTCGCTCTTATTTCTCTCTCTACACAAGCTGCTGCTGCTGTGTCTGT
JMFS100D12+ ATTCAACAACTTTCTCGCTCTTATTTATCTCTCTACACAAGCTGCTGCTG
JMSF046O23+ ATTCAACAACTTTCTCGCTCTTATTTCTCTCTCTACACAAGCTGCTGCTGCTGTGTCTGT
                      ____________________________________________________________
consensus ATTCAACAACTTTCTCGCTCTTATTTCTCTCTCTACACAAGCTGCTGCTGCTGTGTCTGT
 
. : . : . : . : . : . :
JMFS059A01+ AATCTGTATGTATATCTTTCACAGGAGAGGATGGGCTCGCAGGGACAGGA
JMFS110A03+ AATCTGTATGTATATCTT
JMFS155A06+ AATCTGTATGTATATCTTTCACAGGAGA
JMSF022F17+ AATCTGTATGTATATCTTTCACAGGAGAGGATGGGCTCGCAGGGACAGGACAATAGAGTC
JMFS095E09+ AATCTGTATGTATATCTTT
JMSF032P19+ AATCTGTATGTATATCTTTCACAG
JMSF046O23+ AATCTGTATGTATATCTTTCACAGGAGAGGATGGGCTCGCAGGGACAGGACAATAGAGTC
                      ____________________________________________________________
consensus AATCTGTATGTATATCTTTCACAGGAGAGGATGGGCTCGCAGGGACAGGACAATAGAGTC