Contig 005278:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF010L15Sequence658005278 (6)ref|XP_009796493.1|2e-96PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 6-like [Nicotiana sylvestris]720012251 (5)ref|XP_009614011.1|277PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 6 [Nicotiana tomentosiformis]
JMFF010O24Sequence526005278 (6)ref|XP_009619763.1|3e-50PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 6-like [Nicotiana tomentosiformis766012251 (5)ref|XP_009796493.1|2e-92PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 6-like [Nicotiana sylvestris]
JMFF024J17Sequence529005278 (6)ref|XP_009796493.1|2e-72PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 6-like [Nicotiana sylvestris]720012251 (5)ref|XP_009614011.1|276PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 6 [Nicotiana tomentosiformis]
JMFS077E09Sequence640005278 (6)ref|XP_009796493.1|2e-91PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 6-like [Nicotiana sylvestris]
JMSF043H19Sequence790005278 (6)emb|CDO97777.1|1e-113unnamed protein product [Coffea canephora]670012251 (5)gb|KDO53740.1|1e-80hypothetical protein CISIN_1g0080551mg, partial [Citrus sinensis]
JMSF045O23Sequence754005278 (6)ref|XP_009796493.1|6e-99PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 6-like [Nicotiana sylvestris]674012251 (5)ref|XP_009796493.1|4e-89PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 6-like [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF043H19+                                                                  CCCGA
                      ____________________________________________________________
consensus                                                                    CCCGA
 
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JMSF043H19+           GTTCCATGAATTACCACCCGTTTGTAAACTGTTTATGCCTTGCAACTGTGGAGGGATCCA
                      ____________________________________________________________
consensus             GTTCCATGAATTACCACCCGTTTGTAAACTGTTTATGCCTTGCAACTGTGGAGGGATCCA
 
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JMSF043H19+           TCCCGTAAAATGGTTGTTCTCGACATTTAGATTATCGAGGGGAAGATTTGCAAGAACATC
JMFF010L15+                                                    GAAGATTTGCAAGAACATC
JMSF045O23+                                     TTAGATTATCGAGGGGAAGATTTGCAAGAACATC
                      ____________________________________________________________
consensus             TCCCGTAAAATGGTTGTTCTCGACATTTAGATTATCGAGGGGAAGATTTGCAAGAACATC
 
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JMSF043H19+           AATAGTTCCAGTAAACACGTTATTCTGCAAATACATGTTTTTCATATTTGTAAGCGAGCT
JMFF010L15+           AATAGTTCCAGTAAACACGTTATTCTGCAAATACATGTTTTTCATATTTGTAAGCGAGCT
JMFS077E09+            ATAGTTCCAGTAAACACGTTATTCTGCAAATACATGTTTTTCATATTTGTAAGCGAGCT
JMSF045O23+           AATAGTTCCAGTAAACACGTTATTCTGCAAATACATGTTTTTCATATTTGTAAGCGAGCT
                      ____________________________________________________________
consensus             AATAGTTCCAGTAAACACGTTATTCTGCAAATACATGTTTTTCATATTTGTAAGCGAGCT
 
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JMSF043H19+           GAAAGTTTGAGGAATATTACCAGCCAGAGAATTAAAAGAGAAATCCAGTGTCGACAGGTT
JMFF010L15+           GAAAGTTTGAGGAATATTACCAGCCAGAGAATTAAAAGAGAAATCCAGTGTCGACAGGTT
JMFF024J17+                                                             TCGACAGGTT
JMFS077E09+           GAAAGTTTGAGGAATATTACCAGCCAGAGAATTAAAAGAGAAATCCAGTGTCGACAGGTT
JMSF045O23+           GAAAGTTTGAGGAATATTACCAGCCAGAGAATTAAAAGAGAAATCCAGTGTCGACAGGTT
                      ____________________________________________________________
consensus             GAAAGTTTGAGGAATATTACCAGCCAGAGAATTAAAAGAGAAATCCAGTGTCGACAGGTT
 
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JMSF043H19+           CGTAAGCGATACGAACATGACGGTCACTTCGCCCTGGAGTTGATTGTGACTAACATTTAA
JMFF010L15+           CGTAAGCGATACGAACATGACGGTCACTTCGCCCTGGAGTTGATTGTGACTAACATTTAA
JMFF024J17+           CGTAAGCGATACGAACATGACGGTCACTTCGCCCTGGAGTTGATTGTGACTAACATTTAA
JMFS077E09+           CGTAAGCGATACGAACATGACGGTCACTTCGCCCTGGAGTTGATTGTGACTAACATTTAA
JMFF010O24+                                                                      A
JMSF045O23+           CGTAAGCGATACGAACATGACGGTCACTTCGCCCTGGAGTTGATTGTGACTAACATTTAA
                      ____________________________________________________________
consensus             CGTAAGCGATACGAACATGACGGTCACTTCGCCCTGGAGTTGATTGTGACTAACATTTAA
 
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JMSF043H19+           ATATTCGAGGGGGGCCATTTGTGAAATGGAATATGGGAGGCCACCGGTAAAGCCATTACC
JMFF010L15+           ATATTCGAGGGGGGCCATTTGTGAAATGGAATATGGGAGGCCACCGGTAAAGCCATTACC
JMFF024J17+           ATATTCGAGGGGGGCCATTTGTGAAATGGAATATGGGAGGCCACCGGTAAAGCCATTACC
JMFS077E09+           ATATTCGAGGGGGGCCATTTGTGAAATGGAATATGGGAGGCCACCGGTAAAGCCATTACC
JMFF010O24+           ATATTCGAGGGGGGCCATTTGTGAAATGGAATATGGGAGGCCACCGGTAAAGCCATTACC
JMSF045O23+           ATATTCGAGGGGGGCCATTTGTGAAATGGAATATGGGAGGCCACCGGTAAAGCCATTACC
                      ____________________________________________________________
consensus             ATATTCGAGGGGGGCCATTTGTGAAATGGAATATGGGAGGCCACCGGTAAAGCCATTACC
 
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JMSF043H19+           AGCGAGATTTAGTTTCTGTACATTTGGAGGGAGCTGATATGGCAATGAGTTCCCGAGATT
JMFF010L15+           AGCGAGATTTAGTTTCTGTACATTTGGAGGGAGCTGATATGGCAATGAGTTCCCGAGATT
JMFF024J17+           AGCGAGATTTAGTTTCTGTACATTTGGAGGGAGCTGATATGGCAATGAGTTCCCGAGATT
JMFS077E09+           AGCGAGATTTAGTTTCTGTACATTTGGAGGGAGCTGATATGGCAATGAGTTCCCGAGATT
JMFF010O24+           AGCGAGATTTAGTTTCTGTACATTTGGAGGGAGCTGATATGGCAATGAGTTCCCGAGATT
JMSF045O23+           AGCGAGATTTAGTTTCTGTACATTTGGAGGGAGCTGATATGGCAATGAGTTCCCGAGATT
                      ____________________________________________________________
consensus             AGCGAGATTTAGTTTCTGTACATTTGGAGGGAGCTGATATGGCAATGAGTTCCCGAGATT
 
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JMSF043H19+           GTTAGTACTTATATCAAAGGTGGTTACAGATTTCAGTTGATCCAATTGGAATCCCATTGA
JMFF010L15+           GTTAGTACTTATATCAAAGGTGGTTACAGATTTCAGTTGATCCAATTGGAATCCCATTGA
JMFF024J17+           GTTAGTACTTATATCAAAGGTGGTTACAGATTTCAGTTGATCCAATTGGAATCCCATTGA
JMFS077E09+           GTTAGTACTTATATCAAAGGTGGTTACAGATTTCAGTTGATCCAATTGGAATCCCATTGA
JMFF010O24+           GTTAGTACTTATATCAAAGGTGGTTACAGATTTCAGTTGATCCAATTGGAATCCCATTGA
JMSF045O23+           GTTAGTACTTATATCAAAGGTGGTTACAGATTTCAGTTGATCCAATTGGAATCCCATTGA
                      ____________________________________________________________
consensus             GTTAGTACTTATATCAAAGGTGGTTACAGATTTCAGTTGATCCAATTGGAATCCCATTGA
 
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JMSF043H19+           CCCAGTGAGTTGTAGACCCGAAATCTGAATTTCGGTTACTCTATTGCCTGAACAACTAAC
JMFF010L15+           CCCAGTGAGTTGTAGACCCGAAATCTGAATTTCGGTTACTCTATTGCCTGAACAACTAAC
JMFF024J17+           CCCAGTGAGTTGTAGACCCGAAATCTGAATTTCGGTTACTCTATTGCCTGAACAACTAAC
JMFS077E09+           CCCAGTGAGTTGTAGACCCGAAATCTGAATTTCGGTTACTCTATTGCCTGAACAACTAAC
JMFF010O24+           CCCAGTGAGTTGTAGACCCGAAATCTGAATTTCGGTTACTCTATTGCCTGAACAACTAAC
JMSF045O23+           CCCAGTGAGTTGTAGACCCGAAATCTGAATTTCGGTTACTCTATTGCCTGAACAACTAAC
                      ____________________________________________________________
consensus             CCCAGTGAGTTGTAGACCCGAAATCTGAATTTCGGTTACTCTATTGCCTGAACAACTAAC
 
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JMSF043H19+           GCCCTTCCACGACTCTCCACAAGGGTCTCCACCATTTGCCGTCCATTTTGTAAGCTGCGG
JMFF010L15+           GCCCTTCCACGACTCTCCACAAGGGTCTCCACCATTTGCCGTCCATTTTGTAAGCTGCGG
JMFF024J17+           GCCCTTCCACGACTCTCCACAAGGGTCTCCACCATTTGCCGTCCATTTTGTAAGCTGCGG
JMFS077E09+           GCCCTTCCACGACTCTCCACAAGGGTCTCCACCATTTGCCGTCCATTTTGTAAGCTGCGG
JMFF010O24+           GCCCTTCCACGACTCTCCACAAGGGTCTCCACCATTTGCCGTCCATTTTGTAAGCTGCGG
JMSF045O23+           GCCCTTCCACGACTCTCCACAAGGGTCTCCACCATTTGCCGTCCATTTTGTAAGCTGCGG
                      ____________________________________________________________
consensus             GCCCTTCCACGACTCTCCACAAGGGTCTCCACCATTTGCCGTCCATTTTGTAAGCTGCGG
 
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JMSF043H19+           TGGTGAGTTCAGGCTGGAGAACAACCCCCTCAGAACTGACGCATCAGTCGGATCTGTATC
JMFF010L15+           TGGTGAGTTCAGGCTGGAGAACAACCCCCTCAGAACTGACGCATCAGTCGGATCTGTATC
JMFF024J17+           TGGTGAGTTCAGGCTGGAGAACAACCCCCTCAGAACTGACGCATCAGTCGGATCTGTATC
JMFS077E09+           TGGTGAGTTCAGGCTGGAGAACAACCCCCTCAGAACTGACGCATCAGTCGGATCTGTATC
JMFF010O24+           TGGTGAGTTCAGGCTGGAGA--AACCCCCTCAGAACTGACGCATCAGTCGGATCTGTATC
JMSF045O23+           TGGTGAGTTCAGGCTGGAGAACAACCCCCTCAGAACTGACGCATCAGTCGGATCTGTATC
                      ____________________________________________________________
consensus             TGGTGAGTTCAGGCTGGAGAACAACCCCCTCAGAACTGACGCATCAGTCGGATCTGTATC
 
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JMSF043H19+           AGCGACGGCGGAGGGCGGCGCGTTGAGCAAAAACCCAATGAGAAGCGCCACCGCCCACGG
JMFF010L15+           AGCGACGGCGGAGGGCGGCGCGTTGAGCAGAAACCCAATGAGAAGCGCCACCGCCCACGG
JMFF024J17+           AGCGACGGCGGAGGGCGGCGCGTTGAGCAGAAACCCAATGAGAAGCGCCACCGCCCACGG
JMFS077E09+           AGCGACGGCGGAGGGCGGCGCGTTGAGCAGAAACCCAATGAGAAGCGCCACCGCCCACGG
JMFF010O24+           AGCGACGGCGGAGGGCGGCGCGTTGAGCAGAAACCCAATGAGAAGCGCCACCGCCCACGG
JMSF045O23+           AGCGACGGCGGAGGGCGGCGCGTTGAGCAGAAACCCAATGAGAAGCGCCACCGCCCACGG
                      ____________________________________________________________
consensus             AGCGACGGCGGAGGGCGGCGCGTTGAGCAGAAACCCAATGAGAAGCGCCACCGCCCACGG
 
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JMSF043H19+           CAGCCCCATTAGCTCTCTCATCTTCAAGCTCGCTCGCTCGCTCAGTCAGTCCCAA     
JMFF010L15+           CAGCCCCATTAGCTCTCTCATCTTCAAGCTCGCTCGCTC                     
JMFF024J17+           CAGCCCCATTAGCTCTCTCATCTTCAAGCTCGCTC                         
JMFS077E09+           CAGCCCCATTAGCTCTCTCATCTTCAAGCTCGCTCGCTCGC                   
JMFF010O24+           CAGCCCCATTAGCTCTCTCATCTTCAAGCTCGCTCGCTCGCTCAGTCAGTCCCAA     
JMSF045O23+           CAGCCCCATTAGCTCTCTCATCTTCAAGCTCGCTCGCTCGCTCAGTCAGTCCCAACTAGG
                      ____________________________________________________________
consensus             CAGCCCCATTAGCTCTCTCATCTTCAAGCTCGCTCGCTCGCTCAGTCAGTCCCAACTAGG
 
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JMSF045O23+           GAACAAAAGGGCCTTGTCAGAGCTTCCAACTTTTGTTAAATACTATTTATTGTTAACCCT
                      ____________________________________________________________
consensus             GAACAAAAGGGCCTTGTCAGAGCTTCCAACTTTTGTTAAATACTATTTATTGTTAACCCT