clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF044E04 | Sequence | 643 | 005277 (3) | ref|XP_009776163.1| | 8e-62 | PREDICTED: uncharacterized protein LOC104225980 isoform X4 [Nicotiana sylvestri | 506 | 008642 (3) | ref|XP_009776163.1| | 2e-22 | PREDICTED: uncharacterized protein LOC104225980 isoform X4 [Nicotiana sylvestri |
JMSF024M01 | Sequence | 684 | 005277 (3) | ref|XP_009776162.1| | 2e-81 | PREDICTED: uncharacterized protein LOC104225980 isoform X3 [Nicotiana sylvestri | 691 | 008642 (3) | ref|XP_010324617.1| | 1e-40 | PREDICTED: uncharacterized protein LOC101247143 isoform X1 [Solanum lycopersicu |
JMSF045O11 | Sequence | 719 | 005277 (3) | ref|XP_009776162.1| | 3e-82 | PREDICTED: uncharacterized protein LOC104225980 isoform X3 [Nicotiana sylvestri | 545 | 008642 (3) | ref|XP_009776163.1| | 1e-22 | PREDICTED: uncharacterized protein LOC104225980 isoform X4 [Nicotiana sylvestri |
This contig is upended
. : . : . : . : . : . :
JMSF024M01+ CTGAAAAGGCAAATCGTGCAACCGCAGCCATTTAACATTAAAACTGCGACCCCAAGGATT
JMSF045O11+ TGAAAAGGCAAATCGTGCAACCGCAGCCATTTAACATTAAAACTGCGACCCCAAGGATT
____________________________________________________________
consensus CTGAAAAGGCAAATCGTGCAACCGCAGCCATTTAACATTAAAACTGCGACCCCAAGGATT
. : . : . : . : . : . :
JMSF024M01+ GCGCCCACTACTTCCTNGGCTCCAGACATGGTCACGTCTCCCAACAGATGATGTCATTTG
JMFF044E04+ GGCTCCAGACATGGTCACGTCTCCCAACAGATGATGTCATTTG
JMSF045O11+ GCGCCCACCACTTCCTTGGCTCCAGACATGGTCACGTCTCCCAACAGATGATGTCATTTG
____________________________________________________________
consensus GCGCCCACTACTTCCTTGGCTCCAGACATGGTCACGTCTCCCAACAGATGATGTCATTTG
. : . : . : . : . : . :
JMSF024M01+ TGCATATCCTTGGAAGAAACCACTCATGTTGACACTAAATATTAGAATAACCTTCTTTGA
JMFF044E04+ TGCATATCCTGNGAAGAAACCACTCATGTGNACACTAAATATTAGAATAACCTTCTTTGA
JMSF045O11+ TGCATATCCTTGGAAGAAACCACTCATGTTGACACTAAATATTAGAATAACCTTCTTTGA
____________________________________________________________
consensus TGCATATCCTTGGAAGAAACCACTCATGTTGACACTAAATATTAGAATAACCTTCTTTGA
. : . : . : . : . : . :
JMSF024M01+ ATTATGAAAGGCTTCCTCCAGAATATGCTCATTCATAACTTGTGTTGCCCAAATGCCTTT
JMFF044E04+ ATTATGAAAGGCTTCCTCCAGAATATGCTCATTCATAACTTGTGTTGCCCAAATGCCTTT
JMSF045O11+ ATTATGAAAGGCTTCCTCCAGAATATGCTCATTCATAACTTGTGTTGCCCAAATGCCTTT
____________________________________________________________
consensus ATTATGAAAGGCTTCCTCCAGAATATGCTCATTCATAACTTGTGTTGCCCAAATGCCTTT
. : . : . : . : . : . :
JMSF024M01+ CTTTACTGACAATTGAAGGTTTTCATGGTTCAAACTCTTGATAATGAAATATCTTGTGCC
JMFF044E04+ CTTTACTGACAATTGAAGGTTTTCATGGTTCAAACTCTTGATAATGAAATATCTTGTGCC
JMSF045O11+ CTTTACTGACAATTGAAGGTTTTCATGGTTCAAACTCTTGATAATGAAATATCTTGTGCC
____________________________________________________________
consensus CTTTACTGACAATTGAAGGTTTTCATGGTTCAAACTCTTGATAATGAAATATCTTGTGCC
. : . : . : . : . : . :
JMSF024M01+ ATGCAGCTTTCCATTCCCAACTGCAGCTGAAATGCCAATCTGATCACATGGGATTTCCTG
JMFF044E04+ ATGCAGCTTTCCATTCCCAACTGCAGCTGAAATGCCAATCTGATCACATGGGATTTCCTG
JMSF045O11+ ATGCAGCTTTCCATTCCCAACTGCAGCTGAAATGCCAATCTGATCACATGGGATTTCCTG
____________________________________________________________
consensus ATGCAGCTTTCCATTCCCAACTGCAGCTGAAATGCCAATCTGATCACATGGGATTTCCTG
. : . : . : . : . : . :
JMSF024M01+ GTAATCTGCTCCAGAATGATAGGTATTGTTCTTCTCTCTATAGTTTGGGATATCTGGATC
JMFF044E04+ GTAATCTGCTCCAGAATGATAGGTATTGTTCTTCTCTCTATAGTTTGGGATATCTGGATC
JMSF045O11+ GTAATCTGCTCCAGAATGATAGGTATTGTTCTTCTCTCTATAGTTTGGGATATCTGGATC
____________________________________________________________
consensus GTAATCTGCTCCAGAATGATAGGTATTGTTCTTCTCTCTATAGTTTGGGATATCTGGATC
. : . : . : . : . : . :
JMSF024M01+ ATCCATATTCCCTTTGTCATTTTTCCATTCAGTCCCCGATGATTCAACTACAGATACATT
JMFF044E04+ ATCCATATTCCCTTTGTCATTTTTCCATTCAGTCCCCGATGATTCAACTACAGATACATT
JMSF045O11+ ATCCATATTCCCTTTGTCATTTTTCCATTCAGTCCCCGATGATTCAACTACAGATACATT
____________________________________________________________
consensus ATCCATATTCCCTTTGTCATTTTTCCATTCAGTCCCCGATGATTCAACTACAGATACATT
. : . : . : . : . : . :
JMSF024M01+ TTCTTTTGCAGTATCTGATGACATATCTTGGACACCTTCTATAACATGGTCGCAACAGAA
JMFF044E04+ TTCTTTTGCAGTATCTGATGACATATCTTGGACACCTTCTATAACATGGTCGCAACAGAA
JMSF045O11+ TTCTTTTGCAGTATCTGATGACATATCTTGGACACCTTCTATAACATGGTCGCAACAGAA
____________________________________________________________
consensus TTCTTTTGCAGTATCTGATGACATATCTTGGACACCTTCTATAACATGGTCGCAACAGAA
. : . : . : . : . : . :
JMSF024M01+ TGATGGTGGACACAAATTAGATCTAAAAGTACTCCTGCGACGCTGCCCGTTTGCCTCCTC
JMFF044E04+ TGATGGTGGACACAAATTAGATCTAAAAGTACTCCTGCGACGCTGCCCGTTTGCCTCCTC
JMSF045O11+ TGATGGTGGACACAAATTAGATCTAAAAGTACTCCTGCAACGCTGCCCGTTTGCCTCCTC
____________________________________________________________
consensus TGATGGTGGACACAAATTAGATCTAAAAGTACTCCTGCGACGCTGCCCGTTTGCCTCCTC
. : . : . : . : . : . :
JMSF024M01+ GCCGGTAGCTCGCCGCCCCGCCGCCGCCAGTCGTCCGCTCGTCGCAGGAACGCCGTCTGA
JMFF044E04+ GCCGGTAGCTCGCCGCCCCGCCGCCGCCAGTCGTCCGCTCGTCGCAGGAACGCCGTCTGA
JMSF045O11+ GCCGGTAGCTCGCCGCCCCGCCGCCGCCAGTCGTCCGCTCGTCGCAGGAACGCCGTCTGA
____________________________________________________________
consensus GCCGGTAGCTCGCCGCCCCGCCGCCGCCAGTCGTCCGCTCGTCGCAGGAACGCCGTCTGA
. : . : . : . : . : . :
JMSF024M01+ CCGTCTCGCAAAATCGCAGACA
JMFF044E04+ CCGTCTCGCAAAATCGCAGACACAGGAAGTCAGAACTCAACGAAAGTAATTGATTTACC
JMSF045O11+ CCGTCTCGCAAAATCGCAGACACAGGAAGTCAGAACTCAACGAAAGTAATTGATTTACCC
____________________________________________________________
consensus CCGTCTCGCAAAATCGCAGACACAGGAAGTCAGAACTCAACGAAAGTAATTGATTTACCC