Contig 005273:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF044I06Sequence631005273 (4)ref|XP_008243317.1|2e-61PREDICTED: transcription factor bHLH140 [Prunus mume]582008583 (4)ref|XP_009789107.1|2e-93PREDICTED: transcription factor bHLH140 isoform X1 [Nicotiana sylvestris]
JMSF035B09Sequence673005273 (4)ref|XP_009628444.1|3e-95PREDICTED: transcription factor bHLH140 isoform X3 [Nicotiana tomentosiformis]753008583 (4)ref|XP_009789108.1|1e-118PREDICTED: transcription factor bHLH140 isoform X2 [Nicotiana sylvestris]
JMSF036D16Sequence691005273 (4)ref|XP_009628444.1|2e-98PREDICTED: transcription factor bHLH140 isoform X3 [Nicotiana tomentosiformis]783008583 (4)ref|XP_009789108.1|1e-120PREDICTED: transcription factor bHLH140 isoform X2 [Nicotiana sylvestris]
JMSF045H06Sequence692005273 (4)ref|XP_009628444.1|2e-98PREDICTED: transcription factor bHLH140 isoform X3 [Nicotiana tomentosiformis]841008583 (4)ref|XP_009789108.1|9e-134PREDICTED: transcription factor bHLH140 isoform X2 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF036D16+                                      CTCTGACCAAAACAACCTGATGGAAGTGAATCT
JMSF035B09+                                                        GATGGAAGTGAATCT
JMSF045H06+                                       TCTGACCAAAACAACCTGATGGAAGTGAATCT
                      ____________________________________________________________
consensus                                        CTCTGACCAAAACAACCTGATGGAAGTGAATCT
 
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JMSF036D16+           GATGGACCAAGTCCACAATACATATCAATAGCAGCTTGAACTTCTTTTTCATCTTGACAA
JMSF035B09+           GATGGACCAAGTCCACAATACATATCAATAGCAGCTTGAACTTCTTTTTCATCTTGACAA
JMFF044I06+                           AATACATATCAATAGCAGCTTGAACTTCTTTTTCATCTTGACAA
JMSF045H06+           GATGGACCAAGTCCACAATACATATCAATAGCAGCTTGAACTTCTTTTTCATCTTGACAA
                      ____________________________________________________________
consensus             GATGGACCAAGTCCACAATACATATCAATAGCAGCTTGAACTTCTTTTTCATCTTGACAA
 
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JMSF036D16+           AATGTAATCCGTGCAAATCCTTCACTCAACTTAGGCAATTCTTTCTTTTGAAGCATCCTA
JMSF035B09+           AATGTAATCCGTGCAAATCCTTCACTCAACTTAGGCAATTCTTTCTTTTGAAGCATCCTA
JMFF044I06+           AATGTAATCCGTGCAAATCCTTCACTCAACTTAGGCAATTCTTTCTTTTGAAGCATCCTA
JMSF045H06+           AATGTAATCCGTGCAAATCCTTCACTCAACTTAGGCAATTCTTTCTTTTGAAGCATCCTA
                      ____________________________________________________________
consensus             AATGTAATCCGTGCAAATCCTTCACTCAACTTAGGCAATTCTTTCTTTTGAAGCATCCTA
 
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JMSF036D16+           TTAACAACGGCAGCAGCCTTCCCACCTTGCAGTTTTCCTTCATGCCCAGTGCGTTTTACA
JMSF035B09+           TTAACAACGGCAGCAGCCTTCCCACCTTGCAGTTTTCCTTCATGCCCAGTGCGTTTTACA
JMFF044I06+           TTAACAACGGCAGCAGCCTTCCCACCTTGCAGTTTTCCTTCATGCCCAGTGCGTTTTACA
JMSF045H06+           TTAACAACGGCAGCAGCCTTCCCACCTTGCAGTTTTCCTTCATGCCCAGTGCGTTTTACA
                      ____________________________________________________________
consensus             TTAACAACGGCAGCAGCCTTCCCACCTTGCAGTTTTCCTTCATGCCCAGTGCGTTTTACA
 
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JMSF036D16+           GACCGAGATATACAAATCTTTGCAGGAAGATCGAGCACCACAGCATGCTTCTCAACCTTT
JMSF035B09+           GACCGAGATATACAAATCTTTGCAGGAAGATCGAGCACCACAGCATGCTTCTCAACCTTT
JMFF044I06+           GACCGAGATATACAAATCTTTGCAGGAAGATCGAGCACCACAGCATGCTTCTCAACCTTT
JMSF045H06+           GACCGAGATATACAAATCTTTGCAGGAAGATCGAGCACCACAGCATGCTTCTCAACCTTT
                      ____________________________________________________________
consensus             GACCGAGATATACAAATCTTTGCAGGAAGATCGAGCACCACAGCATGCTTCTCAACCTTT
 
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JMSF036D16+           GAGTCACCAAGCTTCATAAAGTCTGCACGCTGTTCTATATCCAAGTTGCATCTATCTATA
JMSF035B09+           GAGTCACCAAGCTTCATAAAGTCTGCACGCTGTTCTATATCCAAGTTGCATCTATCTATA
JMFF044I06+           GAGTCACCAAGC-TCATAAAGTCTGCACGCTGTTCTATATCCAAGTTGCATCTATCTATA
JMSF045H06+           GAGTCACCAAGCTTCATAAAGTCTGCACGCTGTTCTATATCCAAGTTGCATCTATCTATA
                      ____________________________________________________________
consensus             GAGTCACCAAGCTTCATAAAGTCTGCACGCTGTTCTATATCCAAGTTGCATCTATCTATA
 
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JMSF036D16+           AATACACTTTTACCATCCTTCAATGCAGTAGCTGCACTCGTCAGGCATTGTGTCTTTGTC
JMSF035B09+           AATACACTTTTACCATCCTTCAATGCAGTAGCTGCACTCGTCAGGCATTGTGTCTTTGTC
JMFF044I06+           AATACACTTTTACCATCCTTCAATGCAGTAGCTGCACTCGTCAGGCATTGTGTCTTTGTC
JMSF045H06+           AATACACTTTTACCATCCTTCAATGCAGTAGCTGCACTCGTCAGGCATTGTGTCTTTGTC
                      ____________________________________________________________
consensus             AATACACTTTTACCATCCTTCAATGCAGTAGCTGCACTCGTCAGGCATTGTGTCTTTGTC
 
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JMSF036D16+           CCTGCCTTGCCATTCCCAATTGTATCCTGGCAGACCCGAACCCAGGGTCGAGAGGCGGCG
JMSF035B09+           CCTGCCTTGCCATTCCCAATTGTATCCTGGCAGACCCGAACCCAGGGTCGAGAGGCGGCG
JMFF044I06+           CCTGCCTTGCCATTCCCAATTGTATCCTGGCAGACCCGAACCCA-GGTCGAGAGGCGGCG
JMSF045H06+           CCTGCCTTGCCATTCCCAATTGTATCCTGGCAGACCCGAACCCAGGGTCGAGAGGCGGCG
                      ____________________________________________________________
consensus             CCTGCCTTGCCATTCCCAATTGTATCCTGGCAGACCCGAACCCAGGGTCGAGAGGCGGCG
 
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JMSF036D16+           CGCATGACCTGATCGCAGAACGTAGACTTTCCACTACCCGGCGCACCCACCAATACCACC
JMSF035B09+           CGCATGACCTGATCGCAGAACGTAGACTTTCCACTACCCGGCGCACCCACCAATACCACC
JMFF044I06+           CGCATGACCTGATCGCAGAACGTAGACTTTCCACTACCCGGCGCACCCACCAATACCACC
JMSF045H06+           CGCATGACCTGATCGCAGAACGTAGACTTTCCACTACCCGGCGCACCCACCAATACCACC
                      ____________________________________________________________
consensus             CGCATGACCTGATCGCAGAACGTAGACTTTCCACTACCCGGCGCACCCACCAATACCACC
 
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JMSF036D16+           ATTATTGCTGCACTGTGCTTCTTTTCTGCTCCTCCATTTTCCCCTCCGGATTCAGTGTCG
JMSF035B09+           ATTATTGCTGCACTGTGCTTCTTTTCTGCTCCTCCATTTTCCCCTCCGGATTCAGTGTCG
JMFF044I06+           ATTATTGCTGCACTGTGCTTCTTTTCTGCTCCTCCATTTTCCCCT               
JMSF045H06+           ATTATTGCTGCACTGTGCTTCTTTTCTGCTCCTCCATTTTCCCCTCCGGATTCAGTGTCG
                      ____________________________________________________________
consensus             ATTATTGCTGCACTGTGCTTCTTTTCTGCTCCTCCATTTTCCCCTCCGGATTCAGTGTCG
 
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JMSF036D16+           CGATCAATATCCATTTTTTCCATGGCAAATTAACTCCAGGTTCACAGTGCTATTCGACAC
JMSF035B09+           CGATCAATATCCATTTTTTCCATGGCAAATTAACTCCAGGTTCACAGTGCTATTCGACAC
JMSF045H06+           CGATCAATATCCATTTTTTCCATGGCAAATTAACTCCAGGTTCACAGTGCTATTCGACAC
                      ____________________________________________________________
consensus             CGATCAATATCCATTTTTTCCATGGCAAATTAACTCCAGGTTCACAGTGCTATTCGACAC
 
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JMSF036D16+           TTCCGCAAGGTTTGGGTACGGCCGTACGGGAACCTCGTCAGGCCAAAACACATACAC   
JMSF035B09+           TTCCGCAAGGTTTGGGTACGGCCGTACGGGAACCTCGTCAGGCCAAAACACATACAC   
JMSF045H06+           TTCCGCAAGGTTTGGGTACGGCCGTACGGGAACCTCGTCAGGCCAAAACACATACACACC
                      ____________________________________________________________
consensus             TTCCGCAAGGTTTGGGTACGGCCGTACGGGAACCTCGTCAGGCCAAAACACATACACACC