| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF034A24 | Sequence | 508 | 005257 (3) | ref|XP_009609678.1| | 8e-33 | PREDICTED: KH domain-containing protein At4g18375 [Nicotiana tomentosiformis] | 740 | 011113 (2) | ref|XP_009591360.1| | 4e-17 | PREDICTED: KH domain-containing protein At4g18375-like, partial [Nicotiana tome |
| JMSF020P03 | Sequence | 690 | 005257 (3) | ref|XP_009609678.1| | 8e-104 | PREDICTED: KH domain-containing protein At4g18375 [Nicotiana tomentosiformis] | 747 | 000132 (30) | ref|XP_006345787.1| | 4e-143 | PREDICTED: proteasome subunit beta type-5-like [Solanum tuberosum] |
| JMSF043D10 | Sequence | 818 | 005257 (3) | ref|XP_009760870.1| | 7e-130 | PREDICTED: KH domain-containing protein At4g18375 [Nicotiana sylvestris] | 790 | 011113 (2) | ref|XP_009591360.1| | 2e-52 | PREDICTED: KH domain-containing protein At4g18375-like, partial [Nicotiana tome |
This contig is upended
. : . : . : . : . : . :
JMSF043D10+ CCACCAGATCTATAAATGCTAGCTGATGAAAGTAACAGG
____________________________________________________________
consensus CCACCAGATCTATAAATGCTAGCTGATGAAAGTAACAGG
. : . : . : . : . : . :
JMSF043D10+ TGCTGGGATCGTGAAGGGTTATCATGAAGGCGTGATGCTACTTGATAAAGTGCCTTTTTC
____________________________________________________________
consensus TGCTGGGATCGTGAAGGGTTATCATGAAGGCGTGATGCTACTTGATAAAGTGCCTTTTTC
. : . : . : . : . : . :
JMSF020P03+ TCATGATAAGCTCATCAGAACCAAGAGCGCAAGGGGGC
JMSF043D10+ ACAACTGCACCTTCCCCTGTTATCATGATAAGCTCATCAGAACCAAGAGCGCAAGGGGGC
____________________________________________________________
consensus ACAACTGCACCTTCCCCTGTTATCATGATAAGCTCATCAGAACCAAGAGCGCAAGGGGGC
. : . : . : . : . : . :
JMSF020P03+ AAATGTTCACTGCTTAAAACTCGAATCTGAGCACCAGTTTCACTGCGTAAATTTTGGATC
JMSF043D10+ AAATGTTCACTGCTTAAAACTCGAATCTGAGCACCAGTTTCACTGCGTAAATTTTGGATC
____________________________________________________________
consensus AAATGTTCACTGCTTAAAACTCGAATCTGAGCACCAGTTTCACTGCGTAAATTTTGGATC
. : . : . : . : . : . :
JMSF020P03+ ACTTGTCCGCCTTTCCCAATAACACAACCTATCTGATCTGATGGCACAAGAAGCCGAACA
JMFF034A24+ TCTGATGGCACAAGAAGCCGAACA
JMSF043D10+ ACTTGTCCGCCTTTCCCAATAACACAACCTATCTGATCTGATGGCACAAGAAGCCGAACA
____________________________________________________________
consensus ACTTGTCCGCCTTTCCCAATAACACAACCTATCTGATCTGATGGCACAAGAAGCCGAACA
. : . : . : . : . : . :
JMSF020P03+ ACAATCTGCTGGGGTTCCCCCAGCTCATCTTCCATGCGTGCCTCTTCTGCAAATACTCTG
JMFF034A24+ ACAATCTGCTGGGGTTCCCCCAGCTCATCTTCCATGCGTGCCTCTTCTGCAAATACTCTG
JMSF043D10+ ACAATCTGCTGGGGTTCCCCCAGCTCATCTTCCATGCGTGCCTCTTCTGCAAATACTCTG
____________________________________________________________
consensus ACAATCTGCTGGGGTTCCCCCAGCTCATCTTCCATGCGTGCCTCTTCTGCAAATACTCTG
. : . : . : . : . : . :
JMSF020P03+ TCATGAACCTTAAAGAGAGCATCCTG---TGGTGAAATTAGATCACCTGTTTCTTCATAT
JMFF034A24+ TCATGAACCTTAAAGAGAGCATCCTGTGCTGGTGAAATTAGATCACCTGTTTCTTCATAT
JMSF043D10+ TCATGAACCTTAAAGAGAGCATCCTGTGCTGGTGAAATTAGATCACCTGTTTCTTCATAT
____________________________________________________________
consensus TCATGAACCTTAAAGAGAGCATCCTGTGCTGGTGAAATTAGATCACCTGTTTCTTCATAT
. : . : . : . : . : . :
JMSF020P03+ TCATTAGTTTCTTCACTCGAACTATAAAGAGTAACCACACGCTCCTCACATCCAGGTATA
JMFF034A24+ TCATTAGTTTCTTCACTCGAACTATAAAGAGTAACCACACGCTCCTCACATCCAGGTATA
JMSF043D10+ TCATTAGTTTCTTCACTCGAACTATAAAGAGTAACCACACGCTCCTCACATCCAGGTATA
____________________________________________________________
consensus TCATTAGTTTCTTCACTCGAACTATAAAGAGTAACCACACGCTCCTCACATCCAGGTATA
. : . : . : . : . : . :
JMSF020P03+ GTCTCACTTATCCTAATTTTTGAATTGGTTTCAGCTCTC-AACTGTTTAGCAATATCCCC
JMFF034A24+ GTCTCACTTATCCTAATTTTTGAATTGGTTTCAGCTCTCAAACTGTTTAGCAATATCCCC
JMSF043D10+ GTCTCACTTATCCTAATTTTTGAATTGGTTTCAGCTCTC-AACTGTTTAGCAATATCCCC
____________________________________________________________
consensus GTCTCACTTATCCTAATTTTTGAATTGGTTTCAGCTCTC-AACTGTTTAGCAATATCCCC
. : . : . : . : . : . :
JMSF020P03+ ACCCACACCAATTATGCTTCCAATTTTACCTAAGGGACACAAAAAACGGTAAACTGTATC
JMFF034A24+ ACCCACACCAATTATGCTTCCAATTTTACCTAAGGGACACAAAAAACGGTAAACTGTATC
JMSF043D10+ ACCCACACCAATTATGCTTCCAATTTTACCTAAGGGACACAAAAAACGGTAAACTGTATC
____________________________________________________________
consensus ACCCACACCAATTATGCTTCCAATTTTACCTAAGGGACACAAAAAACGGTAAACTGTATC
. : . : . : . : . : . :
JMSF020P03+ CTCTGGTCCAATGGTATTTGAGTCTCTTTCATCAGTTGGATTCCTTCTTTTGCCTCCATC
JMFF034A24+ CTCTGGTCCAATGGTATTTGAGTCTCTTTCATCAGTTGGATTCCTTCTTTTGCCTCCATC
JMSF043D10+ CTCTGGTCCAATGGTATTTGAGTCTCTTTCATCAGTTGGATTCCTTCTTTTGCCTCCATC
____________________________________________________________
consensus CTCTGGTCCAATGGTATTTGAGTCTCTTTCATCAGTTGGATTCCTTCTTTTGCCTCCATC
. : . : . : . : . : . :
JMSF020P03+ ATTTCCTGGAAATTCTGAATCAGACTGCAACCTTTTCCCGAAGTTATTCATCTGGCCAGC
JMFF034A24+ ATTTCCTGGAAATTCTGAATCAGACTGCAACCTTTT-CCGAAGTTATTCATCTGGCCAGC
JMSF043D10+ ATTTCCTGGAAATTCTGAATCAGACTGCAACCTTTTCCCGAAGTTATTCATCTGGCCAGC
____________________________________________________________
consensus ATTTCCTGGAAATTCTGAATCAGACTGCAACCTTTTCCCGAAGTTATTCATCTGGCCAGC
. : . : . : . : . : . :
JMSF020P03+ CATATCAACCGGCAC
JMFF034A24+ CATATCAACCGGCAC
JMSF043D10+ CATATCAACCGGCACGTTATTTGATTTTCGTCAGAAACTCATCAGCCAAAATCGGAAAAT
____________________________________________________________
consensus CATATCAACCGGCACGTTATTTGATTTTCGTCAGAAACTCATCAGCCAAAATCGGAAAAT
. : . : . : . : . : . :
JMSF043D10+ TAGCAGTGTATTTTGTAGGGTTTCAAACTTGGAATATATAAATGGAAATGAACCCGACTC
____________________________________________________________
consensus TAGCAGTGTATTTTGTAGGGTTTCAAACTTGGAATATATAAATGGAAATGAACCCGACTC