Contig 005256:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF028M14Sequence510005256 (17)ref|XP_009625574.1|5e-54PREDICTED: photosystem I reaction center subunit N, chloroplastic [Nicotiana to647005256 (17)ref|XP_010270375.1|1e-56PREDICTED: photosystem I reaction center subunit N, chloroplastic-like [Nelumbo
JMFF042I20Sequence630005256 (17)ref|XP_009625574.1|3e-66PREDICTED: photosystem I reaction center subunit N, chloroplastic [Nicotiana to648005256 (17)ref|XP_009625574.1|6e-55PREDICTED: photosystem I reaction center subunit N, chloroplastic [Nicotiana to
JMFF042L20Sequence645005256 (17)ref|XP_009625574.1|4e-66PREDICTED: photosystem I reaction center subunit N, chloroplastic [Nicotiana to402005256 (17)ref|XP_007048403.1|1e-49Photosystem I reaction center subunit PSI [Theobroma cacao] gb|EOX92560.1| Photo
JMFF051L09Sequence630005256 (17)ref|XP_009625574.1|2e-65PREDICTED: photosystem I reaction center subunit N, chloroplastic [Nicotiana to427005256 (17)ref|XP_007048403.1|9e-49Photosystem I reaction center subunit PSI [Theobroma cacao] gb|EOX92560.1| Photo
JMFN012H23Sequence633005256 (17)ref|XP_009625574.1|3e-66PREDICTED: photosystem I reaction center subunit N, chloroplastic [Nicotiana to
JMSF032B19Sequence717005256 (17)ref|XP_009625574.1|8e-66PREDICTED: photosystem I reaction center subunit N, chloroplastic [Nicotiana to658005256 (17)ref|XP_009625574.1|4e-66PREDICTED: photosystem I reaction center subunit N, chloroplastic [Nicotiana to
JMSF036J02Sequence653005256 (17)ref|XP_009625574.1|4e-65PREDICTED: photosystem I reaction center subunit N, chloroplastic [Nicotiana to609005256 (17)ref|XP_010270375.1|4e-55PREDICTED: photosystem I reaction center subunit N, chloroplastic-like [Nelumbo
JMSF043B03Sequence618005256 (17)ref|XP_009625574.1|3e-66PREDICTED: photosystem I reaction center subunit N, chloroplastic [Nicotiana to613005256 (17)ref|XP_009374210.1|4e-55PREDICTED: photosystem I reaction center subunit N, chloroplastic-like [Pyrus x
JMSF053A13Sequence680005256 (17)ref|XP_009625574.1|5e-66PREDICTED: photosystem I reaction center subunit N, chloroplastic [Nicotiana to685005256 (17)ref|XP_009625574.1|6e-66PREDICTED: photosystem I reaction center subunit N, chloroplastic [Nicotiana to

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF051L09- ACCCTGGAGAGTTTTTTTTTTTT
                      ____________________________________________________________
consensus ACCCTGGAGAGTTTTTTTTTTTT
 
. : . : . : . : . : . :
rJMFF051L09- TTTTGGTTTTTTTTTTTTTTGCGTAGGATGAGAGGTTGCAAAGTATTGAAGGAGAAAGCA
rJMSF036J02- TATTGAAGGAGAAAGCA
rJMFF042L20- TGCGTAGGATGAGAGGTTGCAAAGTATTGAAGGAGAAAGCA
rJMFF042I20- TGCGTAGGATGAGAGGTTGCAAAGTATTGAAGGAGAAAGCA
rJMFF028M14- TGCGTAGGATGAGAGGTTGCAAAGTATTGAAGGAGAAAGCA
rJMSF043B03- TGCGTAGGATGAGAGGTTGCAAAGTATTGAAGGAGAAAGCA
JMSF032B19+ TTGAAGGAGAAAGCA
                      ____________________________________________________________
consensus TTTTGGTTTTTTTTTTTTTTGCGTAGGATGAGAGGTTGCAAAGTATTGAAGGAGAAAGCA
 
. : . : . : . : . : . :
rJMFF051L09- GTAGAGATAATACCTGG-AAGAAGAAGAGATACAAGTTCAATCTAAAAAGAGCACTCAAT
rJMSF036J02- GTAGAGATAATACATGGCAAGAAGAAGAGATACAAGTTCAATCTAAAAAGAGCATTCAAT
rJMFF042L20- GTAGAGATAATACATGG-AAGAAGAAGAGATACAAGTTCAATCTAAAAAGAGCATTCAAT
rJMFF042I20- GTAGAGATAATACATGG-AAGAAGAAGAGATACAAGTTCAATCTAAAAAGAGCATTCAAT
rJMFF028M14- GTAGAGATAATACATGG-AAGAAGAAGAGATACAAGTTCAATCTAAAAAGAGCATTCAAT
rJMSF043B03- GTAGAGATAATACATGG-AAGAAGAAGAGATACAAGTTCAATCTAAAAAGAGCATTCAAT
JMSF032B19+ GTAGAGATAATACATGG-AAGAAGAAGAGATACAAGTTCAATCTAAAAAGAGCATTCAAT
JMSF053A13+ TGG-AAGAAGAAGAGATACAAGTTCAATCTAAAAAGAGCATTCAAT
rJMSF032B19- AGTTCAATCTAAAAAGAGCATTCAAT
JMSF036J02+ CTAAAAAGAGCATTCAAT
JMFF042L20+ GAGCATTCAAT
JMFN012H23+ TCTAAAAAGAGCATTCAAT
rJMSF053A13- ATACATGG-AAGAAGAAGAGATACAAGTTCAATCTAAAAAGAGCATTCAAT
                      ____________________________________________________________
consensus GTAGAGATAATACATGG-AAGAAGAAGAGATACAAGTTCAATCTAAAAAGAGCATTCAAT
 
. : . : . : . : . : . :
rJMFF051L09- AATTAATTAGGCATGAATGAAATGAGCGGTCTCACAGTCCCACATTTCACCATTTCCAGA
rJMSF036J02- AATTAATTAGGCATGAATGAAATGAGCGGTCTCACAGTCCCACATTTCACCATTTCCAGA
rJMFF042L20- AATTAATTAGGCATGAATGAAATGAGCGGTCTCACAGTCCCACATTTCACCATTTCCAGA
rJMFF042I20- AATTAATTAGGCATGAATGAAATGAGCGGTCTCACAGTCCCACATTTCACCATTTCCAGA
rJMFF028M14- AATTAATTAGGCATGAATGAAATGAGCGGTCTCACAGTCCCACATTTCACCATTTCCAGA
rJMSF043B03- AATTAATTAGGCATGAATGAAATGAGCGGTCTCACAGTCCCACATTTCACCATTTCCAGA
JMSF032B19+ AATTAATTAGGCATGAATGAAATGAGCGGTCTCACAGTCCCACATTTCACCATTTCCAGA
JMSF053A13+ AATTAATTAGGCATGAATGAAATGAGCGGTCTCACAGTCCCACATTTCACCATTTCCAGA
rJMSF032B19- AATTAATTAGGCATGAATGAAATGAGCGGTCTCACAGTCCCACATTTCACCATTTCCAGA
JMSF036J02+ AATTAATTAGGCATGAATGAAATGAGCGGTCTCACAGTCCCACATTTCACCATTTCCAGA
JMFF042L20+ AATTAATTAGGCATGAATGAAATGAGCGGTCTCACAGTCCCACATTTCACCATTTCCAGA
JMFN012H23+ AATTAATTAGGCATGAATGAAATGAGCGGTCTCACAGTCCCACATTTCACCATTTCCAGA
JMFF042I20+ AATTAATTAGGCATGAATGAAATGAGCGGTCTCACAGTCCCACATTTCACCATTTCCAGA
JMFF051L09+ AATTAGGCATGAATGAAATGAGCGGTCTCACAGTCCCACATTTCACCATTTCCAGA
rJMSF053A13- AATTAATTAGGCATGAATGAAATGAGCGGTCTCACAGTCCCACATTTCACCATTTCCAGA
JMSF043B03+ ACATTTCACCATTTCCAGA
                      ____________________________________________________________
consensus AATTAATTAGGCATGAATGAAATGAGCGGTCTCACAGTCCCACATTTCACCATTTCCAGA
 
. : . : . : . : . : . :
rJMFF051L09- AAACATTGGAACCACACTTGTATTTGTCCTTCCCTTCGCATTCTAATTCCAGGTCATCTG
rJMSF036J02- AAACATTGGAACCACACTTGTATTTGTCCTTCCCTTCGCATTCTAATTCCAGGTCATCTG
rJMFF042L20- AAACATTGGAACCACACTTGTATTTGTCCTTCCCTTCGCATTCTAATTCCAGGTCATCTG
rJMFF042I20- AAACATTGGAACCACACTTGTATTTGTCCTTCCCTTCGCATTCTAATTCCAGGTCATCTG
rJMFF028M14- AAACATTGGAACCACACTTGTATTTGTCCTTCCCTTCGCATTCTAATTCCAGGTCATCTG
rJMSF043B03- AAACATTGGAACCACACTTGTATTTGTCCTTCCCTTCGCATTCTAATTCCAGGTCATCTG
JMSF032B19+ AAACATTGGAACCACACTTGTATTTGTCCTTCCCTTCGCATTCTAATTCCAGGTCATCTG
JMSF053A13+ AAACATTGGAACCACACTTGTATTTGTCCTTCCCTTCGCATTCTAATTCCAGGTCATCTG
rJMSF032B19- AAACATTGGAACCACACTTGTATTTGTCCTTCCCTTCGCATTCTAATTCCAGGTCATCTG
JMSF036J02+ AAACATNGGAACCACACTTGTATTTGTCCTTCCCTTCGCATTCTAATTCCAGGTCATCTG
JMFF042L20+ AAACATTGGAACCACACTTGTATTTGTCCTTCCCTTCGCATTCTAATTCCAGGTCATCTG
JMFN012H23+ AAACATTGGAACCACACTTGTATTTGTCCTTCCCTTCGCATTCTAATTCCAGGTCATCTG
JMFF042I20+ AAACATTGGAACCACACTTGTATTTGTCCTTCCCTTCGCATTCTAATTCCAGGTCATCTG
JMFF051L09+ AAACATTGGAACCACACTNGTATTTGTCCTTCCCTTCGCATTCTAATTCCAGGTCATCTG
JMFF028M14+ CCTTCGCATTCTAATTCCAGGTCATCTG
rJMSF053A13- AAACATTGGAACCACACTTGTATTTGTCCTTCCCTTCGCATTCTAATTCCAGGTCATCTG
JMSF043B03+ AAACATTGGAACCACACTTGTATTTGTCCTTCCCTTCGCATTCTAATTCCAGGTCATCTG
                      ____________________________________________________________
consensus AAACATTGGAACCACACTTGTATTTGTCCTTCCCTTCGCATTCTAATTCCAGGTCATCTG
 
. : . : . : . : . : . :
rJMFF051L09- AGATGAATGGCACTTTCTTTTGCTTGGCAAGGTCTTGACAGCCGGTGAAGTTTTCAGGGA
rJMSF036J02- AGATGAATGGCACTTTCTTTTGCTTGGCAAGGTCTTGACAGCCGGTGAAGTTTTCAGGGA
rJMFF042L20- AGATGAATGGCACTTTCTTTTGCTTGGCAAGGTCTTGACAGCCGGTGAAGTTTTCAGGGA
rJMFF042I20- AGATGAATGGCACTTTCTTTTGCTTGGCAAGGTCTTGACAGCCGGTGAAGTTTTCAGGGA
rJMFF028M14- AGATGAATGGCACTTTCTTTTGCTTGGCAAGGTCTTGACAGCCGGTGAAGTTTTCAGGGA
rJMSF043B03- AGATGAATGGCACTTTCTTTTGCTTGGCAAGGTCTTGACAGCCGGTGAAGTTTTCAGGGA
JMSF032B19+ AGATGAATGGCACTTTCTTTTGCTTGGCAAGGTCTTGACAGCCGGTGAAGTTTTCAGGGA
JMSF053A13+ AGATGAATGGCACTTTCTTTTGCTTGGCAAGGTCTTGACAGCCGGTGAAGTTTTCAGGGA
rJMSF032B19- AGATGAATGGCACTTTCTTTTGCTTGGCAAGGTCTTGACAGCCGGTGAAGTTTTCAGGGA
JMSF036J02+ AGATGAATGGCACTTTCTTTTGCTTGGCAAGGTCTTGACAGCCGGTGAAGTTTTCAGGGA
JMFF042L20+ AGATGAATGGCACTTTCTTTTGCTTGGCAAGGTCTTGACAGCCGGTGAAGTTTTCAGGGA
JMFN012H23+ AGATGAATGGCACTTTCTTTTGCTTGGCAAGGTCTTGACAGCCGGTGAAGTTTTCAGGGA
JMFF042I20+ AGATGAATGGCACTTTCTTTTGCTTGGCAAGGTCTTGACAGCCGGTGAAGTTTTCAGGGA
JMFF051L09+ AGATGAATGGCACTTTCTTTTGCTTGGCAAGGTCTTGACAGCCGGTGAAGTTTTCAGGGA
JMFF028M14+ AGATGAATGGCACTTTCTTTTGCTTGGCAAGGTCTTGACAGCCGGTGAAGTTTTCAGGGA
rJMSF053A13- AGATGAATGGCACTTTCTTTTGCTTGGCAAGGTCTTGACAGCCGGTGAAGTTTTCAGGGA
JMSF043B03+ AGATGAATGGCACTTTCTTTTGCTTGGCAAGGTCTTGACAGCCGGTGAAGTTTTCAGGGA
                      ____________________________________________________________
consensus AGATGAATGGCACTTTCTTTTGCTTGGCAAGGTCTTGACAGCCGGTGAAGTTTTCAGGGA
 
. : . : . : . : . : . :
rJMFF051L09- ACTTGCAGCTCCCAAATTGAACTGTGTATGCTCTTGCAAAGTTTGCTCCACTTGTTGCCA
rJMSF036J02- ACTTGCAGCTCCCAAATTGAACTGTGTATGCTCTTGCAAAGTTTGCTCCACTTGTTGCCA
rJMFF042L20- ACTTGCAGCTCCCAAATTGAACTGTGTATGCTCTTGCAAAGTTTGCTCCACTTGTTGCCA
rJMFF042I20- ACTTGCAGCTCCCAAATTGAACTGTGTATGCTCTTGCAAAGTTTGCTCCACTTGTTGCCA
rJMFF028M14- ACTTGCAGCTCCCAAATTGAACTGTGTATGCTCTTGCAAAGTTTGCTCCACTTGTTGCCA
rJMSF043B03- ACTTGCAGCTCCCAAATTGAACTGTGTATGCTCTTGCAAAGTTTGCTCCACTTGTTGCCA
JMSF032B19+ ACTTGCAGCTCCCAAATTGAACTGTGTATGCTCTTGCAAAGTTTGCTCCACTTGTTGCCA
JMSF053A13+ ACTTGCAGCTCCCAAATTGAACTGTGTATGCTCTTGCAAAGTTTGCTCCACTTGTTGCCA
rJMSF032B19- ACTTGCAGCTCCCAAATTGAACTGTGTATGCTCTTGCAAAGTTTGCTCCACTTGTTGCCA
JMSF036J02+ ACTTGCAGCTCCCAAATTGAACTGTGTATGCTCTTGCAAAGTTTGCTCCACTTGTTGCCA
JMFF042L20+ ACTTGCAGCTCCCAAATTGAACTGTGTATGCTCTTGCAAAGTTTGCTCCACTTGTTGCCA
JMFN012H23+ ACTTGCAGCTCCCAAATTGAACTGTGTATGCTCTTGCAAAGTTTGCTCCACTTGTTGCCA
JMFF042I20+ ACTTGCAGCTCCCAAATTGAACTGTGTATGCTCTTGCAAAGTTTGCTCCACTTGTTGCCA
JMFF051L09+ ACTTGCAGCTCCCAAATTGAACTGTGTATGCTCTTGCAAAGTTTGCTCCACTTGTTGCCA
JMFF028M14+ ACTTGCAGCTCCCAAATTGAACTGTGTATGCTCTTGCAAAGTTTGCTCCACTTGTTGCCA
rJMSF053A13- ACTTGCAGCTCCCAAATTGAACTGTGTATGCTCTTGCAAAGTTTGCTCCACTTGTTGCCA
JMSF043B03+ ACTTGCAGCTCCCAAATTGAACTGTGTATGCTCTTGCAAAGTTTGCTCCACTTGTTGCCA
                      ____________________________________________________________
consensus ACTTGCAGCTCCCAAATTGAACTGTGTATGCTCTTGCAAAGTTTGCTCCACTTGTTGCCA
 
. : . : . : . : . : . :
rJMFF051L09- GCCTCTTCTTGTCATTCAACTCCTTGTTGGCCTTGCTTTTCTCGA
rJMSF036J02- GCCTCTTCTTGTCATTCAACTCCTTGTTGGCCTTGCTTTTCTCGAGATAGTCCTCAATGA
rJMFF042L20- GCCTCTTCTTGTCATTCAACTCCTTGTTGGCCTTGCTTTTCTCGAGA
rJMFF042I20- GCCTCTTCTTGTCATTCAACTCCTTGTTGGCCTTGCTTTTCTCGAGATAGTCCTCAATGA
rJMFF028M14- GCCTCTTCTTGTCATTCAACTCCTTGTTGGCCTTGCTTTTCTCGAGATAGTCCTCAATGA
rJMSF043B03- GCCTCTTCTTGTCATTCAACTCCTTGTTGGCCTTGCTTTTCTCGAGATAGTCCTCAATGA
JMSF032B19+ GCCTCTTCTTGTCATTCAACTCCTTGTTGGCCTTGCTTTTCTCGAGATAGTCCTCAATGA
JMSF053A13+ GCCTCTTCTTGTCATTCAACTCCTTGTTGGCCTTGCTTTTCTCGAGATAGTCCTCAATGA
rJMSF032B19- GCCTCTTCTTGTCATTCAACTCCTTGTTGGCCTTGCTTTTCTCGAGATAGTCCTCAATGA
JMSF036J02+ GCCTCTTCTTGTCATTCAACTCCTTGTTGGCCTTGCTTTTCTCGAGATAGTCCTCAATGA
JMFF042L20+ GCCTCTTCTTGTCATTCAACTCCTTGTTGGCCTTGCTTTTCTCGAGATAGTCCTCAATGA
JMFN012H23+ GCCTCTTCTTGTCATTCAACTCCTTGTTGGCCTTGCTTTTCTCGAGATAGTCCTCAATGA
JMFF042I20+ GCCTCTTCTTGTCATTCAACTCCTTGTTGGCCTTGCTTTTCTCGAGATAGTCCTCAATGA
JMFF051L09+ GCCTCTTCTTGTCATTCAACTCCTTGTTGGCCTTGCTTTTCTCGAGATAGTCCTCAATGA
JMFF028M14+ GCCTCTTCTTGTCATTCAACTCCTTGTTGGCCTTGCTTTTCTCGAGATAGTCCTCAATGA
rJMSF053A13- GCCTCTTCTTGTCATTCAACTCCTTGTTGGCCTTGCTTTTCTCGAGATAGTCCTCAATGA
JMSF043B03+ GCCTCTTCTTGTCATTCAACTCCTTGTTGGCCTTGCTTTTCTCGAGATAGTCCTCAATGA
                      ____________________________________________________________
consensus GCCTCTTCTTGTCATTCAACTCCTTGTTGGCCTTGCTTTTCTCGAGATAGTCCTCAATGA
 
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rJMSF036J02- CGCCAGCGTTTGCTGAGGAAGTGGATGCTGCGGCGGTGAAAAGGGCAGTTGCGAGGCCGA
rJMFF042I20- CGCCAGCGTTTGCTGAGGAAGTGGATGCTGCGGCGGTGAAAAGGGCAGTTGCGAGGCCGA
rJMFF028M14- CGCCAGCGTTTGCTGAGGAAGTGGATGCTGCGGCGGTGAAAAGGGCAGTTGCGAGGCCGA
rJMSF043B03- CGCCAGCGTTTGCTGAGGAAGTGGATGCTGCGGCGGTGAAAAGGGCAGTTGCGAGGCCGA
JMSF032B19+ CGCCAGCGTTTGCTGAGGAAGTGGATGCTGCGGCGGTGAAAAGGGCAGTTGCGAGGCCGA
JMSF053A13+ CGCCAGCGTTTGCTGAGGAAGTGGATGCTGCGGCGGTGAAAAGGGCAGTTGCGAGGCCGA
rJMSF032B19- CGCCAGCGTTTGCTGAGGAAGTGGATGCTGCGGCGGTGAAAAGGGCAGTTGCGAGGCCGA
JMSF036J02+ CGCCAGCGTTTGCTGAGGAAGTGGATGCTGCGGCGGTGAAAAGGGCAGTTGCGAGGCCGA
JMFF042L20+ CGCCAGCGTTTGCTGAGGAAGTGGATGCTGCGGCGGTGAAAAGGGCAGTTGCGAGGCCGA
JMFN012H23+ CGCCAGCGTTTGCTGAGGAAGTGGATGCTGCGGCGGTGAAAAGGGCAGTTGCGAGGCCGA
JMFF042I20+ CGCCAGCGTTTGCTGAGGAAGTGGATGCTGCGGCGGTGAAAAGGGCAGTTGCGAGGCCGA
JMFF051L09+ CGCCAGCGTTTGCTGAGGAAGTGGATGCTGCGGCGGTGAAAAGGGCAGTTGCGAGGCCGA
JMFF028M14+ CGCCAGCGTTTGCTGAGGAAGTGGATGCTGCGGCGGTGAAAAGGGCAGTTGCGAGGCCGA
rJMSF053A13- CGCCAGCGTTTGCTGAGGAAGTGGATGCTGCGGCGGTGAAAAGGGCAGTTGCGAGGCCGA
JMSF043B03+ CGCCAGCGTTTGCTGAGGAAGTGGATGCTGCGGCGGTGAAAAGGGCAGTTGCGAGGCCGA
                      ____________________________________________________________
consensus CGCCAGCGTTTGCTGAGGAAGTGGATGCTGCGGCGGTGAAAAGGGCAGTTGCGAGGCCGA
 
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rJMSF036J02- GAAGGGCAGCTCTTCTCCCTTGCTGGCTGCCGTTTTCGGAATCCAAAGCTGTTCTTGGTG
rJMFF042I20- GAAGGGCAGCTCTTCTCCCTTGCTGGCTGCCGTTTTCGGAATCCAAAGCTGTTCTTGGTG
rJMFF028M14- GAAGGGCAGCTCTTCTCCCTTGCTGGCTGCCGTTTTCGGAATCCAAAGCTGTTCTTGGTG
rJMSF043B03- GAAGGGCAGCTCTTCTCCCTTGCTGGCTGCCGTTTTCGGAATCCAAAGCTGTTCTTGGTG
JMSF032B19+ GAAGGGCAGCTCTTCTCCCTTGCTGGCTGCCGTTTTCGGAATCCAAAGCTGTTCTTGGTG
JMSF053A13+ GAAGGGCAGCTCTTCTCCCTTGCTGGCTGCCGTTTTCGGAATCCAAAGCTGTTCTTGGTG
rJMSF032B19- GAAGGGCAGCTCTTCTCCCTTGCTGGCTGCCGTTTTCGGAATCCAAAGCTGTTCTTGGTG
JMSF036J02+ GAAGGGCAGCTCTTCTCCCTTGCTGGCTGCCGTTTTCGGAATCCAAAGCTGTTCTTGGTG
JMFF042L20+ GAAGGGCAGCTCTTCTCCCTTGCTGGCTGCCGTTTTCGGAATCCAAAGCTGTTCTTGGTG
JMFN012H23+ GAAGGGCAGCTCTTCTCCCTTGCTGGCTGCCGTTTTCGGAATCCAAAGCTGTTCTTGGTG
JMFF042I20+ GAAGGGCAGCTCTTCTCCCTTGCTGGCTGCCGTTTTCGGAATCCAAAGCTGTTCTTGGTG
JMFF051L09+ GAAGGGCAGCTCTTCTCCCTTGCTGGCTGCCGTTTTCGGAATCCAAAGCTGTTCTTGGTG
JMFF028M14+ GAAGGGCAGCTCTTCTCCCTTGCTGGCTGCCGTTTTCGGAATCCAAAGCTGTTCTTGGTG
rJMSF053A13- GAAGGGCAGCTCTTCTCCCTTGCTGGCTGCCGTTTTCGGAATCCAAAGCTGTTCTTGGTG
JMSF043B03+ GAAGGGCAGCTCTTCTCCCTTGCTGGCTGCCGTTTTCGGAATCCAAAGCTGTTCTTGGTG
                      ____________________________________________________________
consensus GAAGGGCAGCTCTTCTCCCTTGCTGGCTGCCGTTTTCGGAATCCAAAGCTGTTCTTGGTG
 
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rJMSF036J02- GTGGTTGTTGTTGGGCCTTGATTGCCANCAGCTTTGAAGGGGGTGAGACCAT-GGATGCC
rJMFF042I20- GTGGTTGTTGTTGGGCCTTGATTGCCAGCAGCTTTGAAGGGGGTGAGACCAT-GGATGCC
rJMFF028M14- GTGGTTGTTGTTGGGCCTTGATTGCCAGCAGCTTTGAAGGGGGTGAGACCATGGGATGCC
rJMSF043B03- GTGGTTGTTGTTGGGCCTTGATTGCCAGCAGCTTTGAAGGGGGTGAGACCAT-GGATGCC
JMSF032B19+ GTGGTTGTTGTTGGGCCTTGATTGCCAGCAGCTTTGAAGGGGGTGAGACCAT-GGATGCC
JMSF053A13+ GTGGTTGTTGTTGGGCCTTGATTGCCAGCAGCTTTGAAGGGGGTGAGACCAT-GGATGCC
rJMSF032B19- GTGGTTGTTGTTGGGCCTTGATTGCCAGCAGCTTTGAAGGGGGTGAGACCAT-GGATGCC
JMSF036J02+ GTGGTTGTTGTTGGGCCTTGATTGCCAGCAGCTTTGAAGGGGGTGAGACCAT-GGATGCC
JMFF042L20+ GTGGTTGTTGTTGGGCCTTGATTGCCAGCAGCTTTGAAGGGGGTGAGACCAT-GGATGCC
JMFN012H23+ GTGGTTGTTGTTGGGCCTTGATTGCCAGCAGCTTTGAAGGGGGTGAGACCAT-GGATGCC
JMFF042I20+ GTGGTTGTTGTTGGGCCTTGATTGCCAGCAGCTTTGAAGGGGGTGAGACCAT-GGATGCC
JMFF051L09+ GTGGTTGTTGTTGGGCCTTGATTGCCAGCAGCTTTGAAGGGGGTGAGACCAT-GGATGCC
JMFF028M14+ GTGGTTGTTGTTGGGCCTTGATTGCCAGCAGCTTTGAAGGGGGTGAGACCAT-GGATGCC
rJMSF053A13- GTGGTTGTTGTTGGGCCTTGATTGCCAGCAGCTTTGAAGGGGGTGAGACCAT-GGATGCC
JMSF043B03+ GTGGTTGTTGTTGGGCCTTGATTGCCAGCAGCTTTGAAGGGGGTGAGACCAT-GGATGCC
                      ____________________________________________________________
consensus GTGGTTGTTGTTGGGCCTTGATTGCCAGCAGCTTTGAAGGGGGTGAGACCAT-GGATGCC
 
. : . : . : . : . : . :
rJMSF036J02- GACATTGAAGCAGCCTTT
rJMFF042I20- GACATTGAAGCAGCCTTTGCATTGAGCTC
rJMFF028M14- GACATTGAAGCAGCCTTTGCATTGAGCTCA
rJMSF043B03- GACATTGAANCAGCCNTTGCATTGAGCTCA
JMSF032B19+ GACATTGAAGCAGCCTTTGCATTGAGCTCAGATGAAGCAGCCCCTGATATGGCATAGCTG
JMSF053A13+ GACATTGAAGCAGCCTTTGCATTGAGCTCAGATGAAGCAGCCCCTGATATGGCATAGCTG
rJMSF032B19- GACATTGAAGCAGCCTTTGCATTGAGCTCAGATGAAGCAGCCCCTGATATGGCATAGCTG
JMSF036J02+ GACATTGAAGCAGCCTTTGCATTGAGCTCAGATGAAGCAGCCCCTGATATGGCATAGCTG
JMFF042L20+ GACATTGAAGCAGCCTTTGCATTGAGCTCAGATGAAGCAGCCCCTGATATGGCATAGCTG
JMFN012H23+ GACATTGAAGCAGCCTTTGCATTGAGCTCAGATGAAGCAGCCCCTGATATGGCATAGCTG
JMFF042I20+ GACATTGAAGCAGCCTTTGCATTGAGCTCAGATGAAGCAGCCCCTGATATGGCATAGCTG
JMFF051L09+ GACATTGAAGCAGCCTTTGCATTGAGCTCAGATGAAGCAGCCCCTGATATGGCATAGCTG
JMFF028M14+ GACATTGAAGCAGCCTTTGCATTGAGCTCAGATGAAGCAGCCCCTGATATGGCATAGCTG
rJMSF053A13- GACATTGAAGCAGCCTTTGCATTGAGCTCAGATGAAGCAGCCCCTGATATGGCATAGCTG
JMSF043B03+ GACATTGAAGCAGCCTTTGCATTGAGCTCAGATGAAGCAGCCCCTGATATGGCATAGCTG
                      ____________________________________________________________
consensus GACATTGAAGCAGCCTTTGCATTGAGCTCAGATGAAGCAGCCCCTGATATGGCATAGCTG
 
. : . : . : . : . : . :
JMSF032B19+ CATGCCAATACACTGGAGTTCATGGCAGCCATTATCACTATAGATCGAGAAAGCTAGATT
JMSF053A13+ CATGCCAATACACTGGAGTTCATGGCAGCCATTATCACTATAGATCGAGAAAGCTAGATT
rJMSF032B19- CATGCCAATACACTGGAGTTCATGGCAGCCATTATCACTATAGATCGAGAAAGCTAGATT
JMSF036J02+ CATGCCAATACACTGGAGTTCATGGCAGCCATTATCACTATAGATCGAGAAAGCTAGATT
JMFF042L20+ CATGCCAATACACTGGAGTTCATGGCAGCCATTATCACTATAGATCGAGAAAGCTAGATT
JMFN012H23+ CATGCCAATACACTGGAGTTCATGGCAGCCATTATCACTATAGATCGAGAAAGCTAGATT
JMFF042I20+ CATGCCAATACACTGGAGTTCATGGCAGCCATTATCACTATAGATCGAGAAAGCTAGATT
JMFF051L09+ CATGCCAATACACTGGAGTTCATGGCAGCCATTATCACTATAGATCGAGAAAGCTAGATT
JMFF028M14+ CATGCCAATACACTGGAGTTCATGGCAGCCATTATCACTATAGATCGAGAAAGCTAGATT
rJMSF053A13- CATGCCAATACACTGGAGTTCATGGCAGCCATTATCACTATAGATCGAGAAAGCTAGATT
JMSF043B03+ CATGCCAATACACTGGAGTTCATGGCAGCCATTATCACTATAGATCGAGAAAGCTAGATT
                      ____________________________________________________________
consensus CATGCCAATACACTGGAGTTCATGGCAGCCATTATCACTATAGATCGAGAAAGCTAGATT
 
. : . : . : . : . : . :
JMSF032B19+ GATGAGAAATTTTGGTTTTCTTTTTATTTATTGTTC
JMSF053A13+ GATGAGAAATTTTGGTTTTCTTTTTATTTATTGTTC
rJMSF032B19- GATGAGAAATTTTGGTTTTCTTTTTATTTATTG
JMSF036J02+ GATGAGAAATTTTGGTTTTCTTTTTATTTATTGTTC
JMFF042L20+ GATGAGAAATTTTGGTTTTCTTTTTATTTATTGT
JMFN012H23+ GATGAGAAATTTTGG
JMFF042I20+ GATGAGAAATTTTGGTTTTCTTTTTATTTAT
JMFF051L09+ GATGAGAAATTTTGGTTTTCTTTTTATTTATTGT
JMFF028M14+ GAT
rJMSF053A13- GATGAGAAATTTTGGTTTTCTTTTTATTTATTGTTC
JMSF043B03+ GATGAGAAATTTTGGTTTTCTTTTTATTTATTGTTATTTTAATTTTTGGGTTTATGATTC
                      ____________________________________________________________
consensus GATGAGAAATTTTGGTTTTCTTTTTATTTATTGTTCTTTTAATTTTTGGGTTTATGATTC